Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001989

Physical Location & Seq

Genomic Coordinates Reverse (-)

25727605 .. 25728381

Gene Structure 777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG245100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGGAAGAGCGGGCTGGTGGTGGAGGAGATAGCGACCAAAGAGGGTGGTGAGAGTGTGAGCGGCCGCTGGGTTTCAGGGAGGACAATGGTGAAGAAGGGAGGGATATCAGGAAGTCGTTCCTGCATACTGGGAGCTGGTACCGGATGGGTTCCAGGCAATCCATTTTTAGCTTCTAATACTAGTCTTGTGGTTCAGTATTCTCTTTTTGGTTCTTTATCAAATGTGGGTGCCATGGTGGGGGCTATAGCCAGTGGTCAGATTTCTGAGTATATTGGGCGCAAAGGGTCTTTAATGATCGCCACCATTCCTAATGTCATCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005351 GO:0005355 GO:0005402 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009705 GO:0010029 GO:0010030 GO:0012505 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015149 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015749 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0031090 GO:0033500 GO:0034219 GO:0034220 GO:0042592 GO:0042593 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046323 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0051094 GO:0051119 GO:0051179 GO:0051234 GO:0051239 GO:0051240 GO:0055085 GO:0065007 GO:0065008 GO:0071702 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098805 GO:1900140 GO:1902600 GO:1904659 GO:2000026

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

108

Amino Acids

11.0

Weight (kDa)

9.89

Isoelectric Point (pI)

27.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	62 - 108	1.4e-06	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001989)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19450 AT1G75220
fragaria_vesca	FvH4_2g39720 FvH4_2g39720
malus_domestica	MD08G1030900.v1.1 MD15G1026400.v1.1
prunus_persica	Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1 Prupe.1G378500_v2.0.a1
pyrus_communis	pycom08g02430 pycom15g02240
rosa_chinensis	RchiOBHm_Chr2g0113321 RchiOBHm_Chr6g0286231 RchiOBHm_Chr6g0301141
rosa_laevigata	RLG00000011274 RLG00000023030 RLG00000029784
rosa_multiflora	Rmu_sc0000163.1_g000001 Rmu_sc0003433.1_g000002
rosa_roxburghii	Rroxscaffold_172G00445490 Rroxscaffold_1G00005260 Rroxscaffold_2G00122730 Rroxscaffold_6G00422220 Rroxscaffold_7G00167120
rosa_rugosa	Rorug02G0291400 Rorug06G0302000
rosa_samantha	Rh1CG067500 Rh1DG072300 Rh2BG617500 Rh2CG245100 Rh3DG215300 Rh4AG195000 Rh4BG151200 Rh5DG350800 Rh6AG287900 Rh6AG415200 Rh6BG422100 Rh6CG295000 Rh6CG429700 Rh6DG287000 Rh6DG415000 Rh7DG331600
rosa_wichuraiana	Rw3G027690 Rw4G014840 Rw5G039560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	2 cut(s)	140, 230
AccBSI	CCGCTC	2 cut(s)	12, 63
AciI	CCGC	3 cut(s)	12, 63, 67
AcoI	YGGCCR	1 cut(s)	64
AfaI	GTAC	1 cut(s)	142
AfiI	CCNNNNNNNGG	1 cut(s)	240
AhlI	ACTAGT	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	137, 173
AluI	AGCT	2 cut(s)	137, 173
AoxI	GGCC	1 cut(s)	64
Asp700I	GAANNNNTTC	1 cut(s)	118
Asp718I	GGTACC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	282
AsuHPI	GGTGA	2 cut(s)	62, 103
BanI	GGYRCC	2 cut(s)	140, 230
BccI	CCATC	1 cut(s)	141
BciT130I	CCWGG	1 cut(s)	156
BcuI	ACTAGT	1 cut(s)	182
BfaI	CTAG	2 cut(s)	183, 325
BfmI	CTRYAG	1 cut(s)	246
BisI	GCNGC	2 cut(s)	64, 67
BlsI	GCNGC	2 cut(s)	65, 68
Bme1390I	CCNGG	1 cut(s)	156
BmiI	GGNNCC	3 cut(s)	142, 153, 232
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	140
BmuI	ACTGGG	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	234
BsaWI	WCCGGW	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	240
Bse1I	ACTGG	2 cut(s)	135, 252
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	234
BseGI	GGATG	1 cut(s)	152
BseLI	CCNNNNNNNGG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	2 cut(s)	135, 252
BseRI	GAGGAG	1 cut(s)	41
BseX3I	CGGCCG	1 cut(s)	64
BseYI	CCCAGC	1 cut(s)	69
Bsh1285I	CGRYCG	1 cut(s)	67
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	2 cut(s)	140, 230
BsiEI	CGRYCG	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	144
BslI	CCNNNNNNNGG	1 cut(s)	240
BsnI	GGCC	1 cut(s)	66
Bsp143I	GATC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	234
BspACI	CCGC	3 cut(s)	12, 63, 67
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	1 cut(s)	259
BspLI	GGNNCC	3 cut(s)	142, 153, 232
BspQI	GCTCTTC	1 cut(s)	2
BspT107I	GGYRCC	2 cut(s)	140, 230
BsrBI	CCGCTC	2 cut(s)	12, 63
BsrI	ACTGG	2 cut(s)	135, 252
BssECI	CCNNGG	1 cut(s)	234
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	267
BstDSI	CCRYGG	1 cut(s)	234
BstF5I	GGATG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	282
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMCI	CGRYCG	1 cut(s)	67
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	246
BstZI	CGGCCG	1 cut(s)	64
BsuRI	GGCC	1 cut(s)	66
BtgI	CCRYGG	1 cut(s)	234
BtsCI	GGATG	1 cut(s)	152
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	14
CciNI	GCGGCCGC	1 cut(s)	64
CfoI	GCGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	141
CspCI	CAANNNNNGTGG	2 cut(s)	28, 63
CviAII	CATG	1 cut(s)	235
CviJI	RGCY	7 cut(s)	16, 66, 137, 173, 245, 251, 324
CviKI_1	RGCY	7 cut(s)	16, 66, 137, 173, 245, 251, 324
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	267
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	1 cut(s)	64
EagI	CGGCCG	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	2
EarI	CTCTTC	1 cut(s)	2
EclXI	CGGCCG	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	234
Eco32I	GATATC	1 cut(s)	108
Eco52I	CGGCCG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	154
EcoRV	GATATC	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	238
FaiI	YATR	4 cut(s)	128, 236, 248, 273
FatI	CATG	1 cut(s)	234
FauI	CCCGC	1 cut(s)	5
Fnu4HI	GCNGC	2 cut(s)	64, 67
FokI	GGATG	1 cut(s)	159
Fsp4HI	GCNGC	2 cut(s)	64, 67
FspBI	CTAG	2 cut(s)	183, 325
GlaI	GCGC	1 cut(s)	281
GluI	GCNGC	2 cut(s)	64, 67
GsaI	CCCAGC	1 cut(s)	73
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	144
HhaI	GCGC	1 cut(s)	282
Hin1II	CATG	1 cut(s)	238
Hin6I	GCGC	1 cut(s)	280
HinP1I	GCGC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	62, 103
Hpy188I	TCNGA	2 cut(s)	261, 268
Hpy188III	TCNNGA	1 cut(s)	111
HpyAV	CCTTC	1 cut(s)	91
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	238
HspAI	GCGC	1 cut(s)	280
KpnI	GGTACC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	297
LguI	GCTCTTC	1 cut(s)	2
LmnI	GCTCC	1 cut(s)	134
MaeI	CTAG	2 cut(s)	183, 325
MalI	GATC	1 cut(s)	299
MbiI	CCGCTC	2 cut(s)	12, 63
MboI	GATC	1 cut(s)	297
MboII	GAAGA	2 cut(s)	19, 106
MnlI	CCTC	4 cut(s)	19, 37, 75, 95
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	293
MspA1I	CMGCKG	1 cut(s)	69
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	3 cut(s)	142, 153, 232
NotI	GCGGCCGC	1 cut(s)	64
PciSI	GCTCTTC	1 cut(s)	2
PdmI	GAANNNNTTC	1 cut(s)	118
PkrI	GCNGC	2 cut(s)	65, 68
Psp6I	CCWGG	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	142, 153, 232
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	2
SaqAI	TTAA	1 cut(s)	293
SatI	GCNGC	2 cut(s)	64, 67
Sau3AI	GATC	1 cut(s)	297
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	2 cut(s)	139, 175
SfcI	CTRYAG	1 cut(s)	246
SpeI	ACTAGT	1 cut(s)	182
SsiI	CCGC	3 cut(s)	12, 63, 67
SspMI	CTAG	2 cut(s)	183, 325
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	234
TauI	GCSGC	2 cut(s)	66, 69
Tru1I	TTAA	1 cut(s)	293
Tru9I	TTAA	1 cut(s)	293
TscAI	CASTG	1 cut(s)	259
TspRI	CASTG	1 cut(s)	259
XmnI	GAANNNNTTC	1 cut(s)	118
XspI	CTAG	2 cut(s)	183, 325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.