FvH4_3g12630

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001110
Physical Location & Seq
Reverse (-)
7523350 .. 7525141
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g12630.t1

Sequence Viewer

Length: 1236 bp
ATGGGCGCCTTAAAGGGATCCACCGGCGAGCCTAGGGTTAGCCCCGGCCAACAAAACCGTCTGAAACGGATGTCATCAGCGGATGCGAAGAAAAACGACCGAAAGAAAGCTAAGGTTGACGATGACACAGACACTTCGGAGGTAAACAGTCTAGGGATCAGTTGGTTTGCTCCTTTGACTGTTTTGAGCAAGAGCTCTATTAGTTCTATCAAAAATTTTAGAGAAAGCCGTAGAGTTAACCATTTAATCAGTACTGATGAGTTCCATTTGACTCGCAAGAGTCGACGGGATTTAGTTCAAGAGTCTTCCAAAGTTGTTGAGAATGATTTACCTGGATTGGTCTGTAACGATCTTTGTAATGGGAAAGAAAACACATGCATCCCTGTTACAAATGAAGTTGATGTCCCTCCTGTTGCTCCCGAAGAGTTTGAATATCTCAGCACCACCAAAGTTGCAAAAAATTTAGTGATTCCGGCGAGCGCTGAGGGATGTAACTGTAAAGGAAAGTGTACTAACACAAGGACTTGTTATTGTGCTACTCTTAATGGCTCGGATTTTCCTTACGTTGGGAAACCTGGTGGCGGCAGGTTGTTTGAGGCCAAGGCTGTTGTTTTCGAGTGCGGTCCGAACTGCGGCTGCGGGCCTAAGTGTTTGAACCGCACTTCTCAGCAGGGTTTGAAGTATAGGCTAGAGGTTTATAAGACACCTGATAAAGGCTGGGCTGTTAGGTCTTGGGATTTTGTTCCCTCTGGTGGTTATGTGTGCGAGTACACTGGTGTTCTAATGAAGACCAGTGACCTAGACAATGTGTCTGTGAATGATTACTTCTTTGAAATCGATTGTGAGCATACAATGAATGGGATTGGGGTGAGGGAGAAGCGCCTTGGTGAAGTGCCGCCCATTGTAAATGATCATATTACCGGGGTAGATGAAGATGGCAAGTTATTAGAAGAAAGTGACCCCGACTATTGTATCGATGCTGGTTCCAGTGGGAATGTTGCTAGGTTCATCAACCATAGTTGCGAGCCGAATCTGTTTGTGCAGTGTGTCTTGAGTTCTCACCATGATGTTAAACAAGCTAGAATTGTGTTGTTTGCTTCGGAGGACATACCTCCCATGCAAGAACTGACATATGACTATGGCTATGAGCTTGGTAGTGTCGTTGACGCTGATGGAAAAGTAAAGGAGTTACCTTGTTGTTGTGGTACAGCAGAGTGTCGAAAGCGTTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

412

Amino Acids

45.24

Weight (kDa)

5.56

Isoelectric Point (pI)

28.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-SET PF05033 120 - 220 1.8e-16 Pre-SET motif
SET PF00856 239 - 381 8.5e-20 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 699
Acc36I ACCTGC 1 cut(s) 576
AccB1I GGYRCC 1 cut(s) 5
AccI GTMKAC 1 cut(s) 283
AciI CCGC 7 cut(s) 80, 582, 621, 633, 639, 658, 896
AclWI GGATC 3 cut(s) 12, 25, 164
AcoI YGGCCR 1 cut(s) 46
AcsI RAATTY 2 cut(s) 214, 460
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 5 cut(s) 253, 511, 770, 1207, 1232
AfeI AGCGCT 1 cut(s) 481
AfiI CCNNNNNNNGG 5 cut(s) 566, 581, 632, 713, 752
AgsI TTSAA 5 cut(s) 299, 431, 655, 679, 833
AhdI GACNNNNNGTC 1 cut(s) 808
AjnI CCWGG 2 cut(s) 331, 574
AluBI AGCT 4 cut(s) 110, 195, 1079, 1150
AluI AGCT 4 cut(s) 110, 195, 1079, 1150
Alw21I GWGCWC 1 cut(s) 197
AlwI GGATC 3 cut(s) 12, 25, 164
Aor51HI AGCGCT 1 cut(s) 481
AoxI GGCC 3 cut(s) 46, 597, 641
ApeKI GCWGC 1 cut(s) 636
ApoI RAATTY 2 cut(s) 214, 460
AspA2I CCTAGG 1 cut(s) 32
AspLEI GCGC 3 cut(s) 8, 482, 882
AspS9I GGNCC 2 cut(s) 623, 641
AsuC2I CCSGG 2 cut(s) 45, 922
AsuHPI GGTGA 3 cut(s) 880, 899, 1052
AvaII GGWCC 1 cut(s) 623
AvrII CCTAGG 1 cut(s) 32
BaeI ACNNNNGTAYC 2 cut(s) 955, 988
BamHI GGATCC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 197
BbsI GAAGAC 2 cut(s) 297, 794
Bbv12I GWGCWC 1 cut(s) 197
BbvCI CCTCAGC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 623
BccI CCATC 2 cut(s) 929, 1166
BceAI ACGGC 1 cut(s) 213
BciT130I CCWGG 2 cut(s) 333, 576
BclI TGATCA 1 cut(s) 910
BcnI CCSGG 2 cut(s) 45, 922
BfaI CTAG 7 cut(s) 33, 152, 689, 800, 1002, 1080, 1234
BfoI RGCGCY 3 cut(s) 9, 483, 883
BfuAI ACCTGC 1 cut(s) 576
BisI GCNGC 4 cut(s) 583, 634, 637, 896
BlnI CCTAGG 1 cut(s) 32
BlsI GCNGC 4 cut(s) 584, 635, 638, 897
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 4 cut(s) 45, 333, 576, 922
Bme18I GGWCC 1 cut(s) 623
BmeRI GACNNNNNGTC 1 cut(s) 808
BmgT120I GGNCC 2 cut(s) 623, 641
BmiI GGNNCC 3 cut(s) 7, 19, 985
BmrFI CCNGG 4 cut(s) 45, 333, 576, 922
BmsI GCATC 3 cut(s) 73, 387, 967
BpiI GAAGAC 2 cut(s) 297, 794
Bpu10I CCTNAGC 2 cut(s) 111, 483
BpuEI CTTGAG 1 cut(s) 1072
BpuMI CCSGG 2 cut(s) 45, 922
Bsa29I ATCGAT 2 cut(s) 837, 975
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 5 cut(s) 32, 43, 600, 883, 921
Bsc4I CCNNNNNNNGG 5 cut(s) 566, 581, 632, 713, 752
Bse118I RCCGGY 1 cut(s) 23
Bse1I ACTGG 3 cut(s) 778, 792, 987
BseBI CCWGG 2 cut(s) 333, 576
BseCI ATCGAT 2 cut(s) 837, 975
BseDI CCNNGG 5 cut(s) 32, 43, 600, 883, 921
BseGI GGATG 4 cut(s) 75, 88, 378, 494
BseLI CCNNNNNNNGG 5 cut(s) 566, 581, 632, 713, 752
BseMII CTCAG 3 cut(s) 451, 474, 680
BseNI ACTGG 3 cut(s) 778, 792, 987
BseXI GCAGC 1 cut(s) 623
BseYI CCCAGC 1 cut(s) 717
BsgI GTGCAG 1 cut(s) 1061
Bsh1285I CGRYCG 1 cut(s) 100
BshFI GGCC 3 cut(s) 48, 599, 643
BshNI GGYRCC 1 cut(s) 5
BshVI ATCGAT 2 cut(s) 837, 975
BsiEI CGRYCG 1 cut(s) 100
BsiHKAI GWGCWC 1 cut(s) 197
BsiSI CCGG 4 cut(s) 24, 45, 473, 921
BslFI GGGAC 1 cut(s) 389
BslI CCNNNNNNNGG 5 cut(s) 566, 581, 632, 713, 752
BsmFI GGGAC 1 cut(s) 389
BsnI GGCC 3 cut(s) 48, 599, 643
Bsp1286I GDGCHC 1 cut(s) 197
Bsp143I GATC 4 cut(s) 17, 156, 349, 910
BspACI CCGC 7 cut(s) 80, 582, 621, 633, 639, 658, 896
BspANI GGCC 3 cut(s) 48, 599, 643
BspCNI CTCAG 3 cut(s) 450, 475, 679
BspDI ATCGAT 2 cut(s) 837, 975
BspLI GGNNCC 3 cut(s) 7, 19, 985
BspMI ACCTGC 1 cut(s) 576
BspPI GGATC 3 cut(s) 12, 25, 164
BspT107I GGYRCC 1 cut(s) 5
BsrFI RCCGGY 1 cut(s) 23
BsrI ACTGG 3 cut(s) 778, 792, 987
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 5 cut(s) 32, 43, 600, 883, 921
BssMI GATC 4 cut(s) 17, 156, 349, 910
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 3 cut(s) 32, 600, 883
Bst2UI CCWGG 2 cut(s) 333, 576
Bst4CI ACNGT 4 cut(s) 59, 149, 181, 497
Bst6I CTCTTC 1 cut(s) 417
BstACI GRCGYC 1 cut(s) 6
BstC8I GCNNGC 4 cut(s) 29, 478, 641, 1025
BstDEI CTNAG 5 cut(s) 111, 437, 483, 645, 666
BstENI CCTNNNNNAGG 1 cut(s) 711
BstF5I GGATG 4 cut(s) 75, 88, 378, 494
BstH2I RGCGCY 3 cut(s) 9, 483, 883
BstHHI GCGC 3 cut(s) 8, 482, 882
BstKTI GATC 4 cut(s) 20, 159, 352, 913
BstMBI GATC 4 cut(s) 17, 156, 349, 910
BstMCI CGRYCG 1 cut(s) 100
BstNI CCWGG 2 cut(s) 333, 576
BstNSI RCATGY 1 cut(s) 378
BstSCI CCNGG 4 cut(s) 43, 331, 574, 920
BstV1I GCAGC 1 cut(s) 623
BstV2I GAAGAC 2 cut(s) 297, 794
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
Bsu15I ATCGAT 2 cut(s) 837, 975
BsuRI GGCC 3 cut(s) 48, 599, 643
BsuTUI ATCGAT 2 cut(s) 837, 975
BtsCI GGATG 4 cut(s) 75, 88, 378, 494
BtsI GCAGTG 1 cut(s) 1049
BtsIMutI CAGTG 4 cut(s) 771, 799, 994, 1049
BveI ACCTGC 1 cut(s) 576
Cac8I GCNNGC 4 cut(s) 29, 478, 641, 1025
CfoI GCGC 3 cut(s) 8, 482, 882
Cfr10I RCCGGY 1 cut(s) 23
Cfr13I GGNCC 2 cut(s) 623, 641
ClaI ATCGAT 2 cut(s) 837, 975
CpoI CGGWCCG 1 cut(s) 623
CseI GACGC 1 cut(s) 1175
CsiI ACCWGGT 1 cut(s) 574
Csp6I GTAC 5 cut(s) 252, 510, 769, 1206, 1231
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CspI CGGWCCG 1 cut(s) 623
CviAII CATG 3 cut(s) 375, 1064, 1117
CviQI GTAC 5 cut(s) 252, 510, 769, 1206, 1231
DdeI CTNAG 5 cut(s) 111, 437, 483, 645, 666
DinI GGCGCC 1 cut(s) 7
DpnI GATC 4 cut(s) 19, 158, 351, 912
DpnII GATC 4 cut(s) 17, 156, 349, 910
DriI GACNNNNNGTC 1 cut(s) 808
EaeI YGGCCR 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 417
Eam1105I GACNNNNNGTC 1 cut(s) 808
EarI CTCTTC 1 cut(s) 417
Ecl136II GAGCTC 1 cut(s) 195
Eco130I CCWWGG 3 cut(s) 32, 600, 883
Eco24I GRGCYC 1 cut(s) 197
Eco47I GGWCC 1 cut(s) 623
Eco47III AGCGCT 1 cut(s) 481
Eco53kI GAGCTC 1 cut(s) 195
EcoICRI GAGCTC 1 cut(s) 195
EcoNI CCTNNNNNAGG 1 cut(s) 711
EcoRII CCWGG 2 cut(s) 331, 574
EcoT14I CCWWGG 3 cut(s) 32, 600, 883
EcoT22I ATGCAT 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 197
EgeI GGCGCC 1 cut(s) 7
EheI GGCGCC 1 cut(s) 7
ErhI CCWWGG 3 cut(s) 32, 600, 883
FaeI CATG 3 cut(s) 378, 1067, 1120
FaqI GGGAC 1 cut(s) 389
FatI CATG 3 cut(s) 374, 1063, 1116
FauI CCCGC 1 cut(s) 632
FauNDI CATATG 1 cut(s) 1132
FbaI TGATCA 1 cut(s) 910
FblI GTMKAC 1 cut(s) 283
Fnu4HI GCNGC 4 cut(s) 583, 634, 637, 896
FokI GGATG 4 cut(s) 82, 95, 365, 501
FriOI GRGCYC 1 cut(s) 197
Fsp4HI GCNGC 4 cut(s) 583, 634, 637, 896
FspBI CTAG 7 cut(s) 33, 152, 689, 800, 1002, 1080, 1234
GlaI GCGC 3 cut(s) 7, 481, 881
GluI GCNGC 4 cut(s) 583, 634, 637, 896
GsaI CCCAGC 1 cut(s) 721
HaeII RGCGCY 3 cut(s) 9, 483, 883
HaeIII GGCC 3 cut(s) 48, 599, 643
HapII CCGG 4 cut(s) 24, 45, 473, 921
HgaI GACGC 1 cut(s) 1175
HhaI GCGC 3 cut(s) 8, 482, 882
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 3 cut(s) 378, 1067, 1120
Hin6I GCGC 3 cut(s) 6, 480, 880
HinP1I GCGC 3 cut(s) 6, 480, 880
HincII GTYRAC 4 cut(s) 118, 238, 284, 1165
HindII GTYRAC 4 cut(s) 118, 238, 284, 1165
HinfI GANTC 5 cut(s) 271, 280, 302, 469, 1030
HpaI GTTAAC 1 cut(s) 238
HpaII CCGG 4 cut(s) 24, 45, 473, 921
HphI GGTGA 3 cut(s) 880, 899, 1052
Hpy166II GTNNAC 7 cut(s) 118, 145, 238, 284, 510, 771, 1165
Hpy188I TCNGA 5 cut(s) 63, 139, 553, 627, 1102
Hpy188III TCNNGA 3 cut(s) 299, 419, 1051
Hpy8I GTNNAC 7 cut(s) 118, 145, 238, 284, 510, 771, 1165
Hpy99I CGWCG 1 cut(s) 288
HpyCH4III ACNGT 4 cut(s) 59, 149, 181, 497
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 4 cut(s) 378, 455, 1042, 1120
HpyF3I CTNAG 5 cut(s) 111, 437, 483, 645, 666
HpySE526I ACGT 1 cut(s) 564
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 3 cut(s) 378, 1067, 1120
HspAI GCGC 3 cut(s) 6, 480, 880
KasI GGCGCC 1 cut(s) 5
Ksp22I TGATCA 1 cut(s) 910
KspAI GTTAAC 1 cut(s) 238
Kzo9I GATC 4 cut(s) 17, 156, 349, 910
LmnI GCTCC 2 cut(s) 175, 421
Lsp1109I GCAGC 1 cut(s) 623
LweI GCATC 3 cut(s) 73, 387, 967
MabI ACCWGGT 1 cut(s) 574
MaeI CTAG 7 cut(s) 33, 152, 689, 800, 1002, 1080, 1234
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 6 cut(s) 344, 385, 491, 794, 956, 1188
MalI GATC 4 cut(s) 19, 158, 351, 912
MboI GATC 4 cut(s) 17, 156, 349, 910
MboII GAAGA 6 cut(s) 100, 297, 434, 799, 944, 962
MflI RGATCY 1 cut(s) 17
MhlI GDGCHC 1 cut(s) 197
MluCI AATT 3 cut(s) 214, 460, 1083
Mly113I GGCGCC 1 cut(s) 6
MlyI GAGTC 3 cut(s) 265, 289, 311
MnlI CCTC 9 cut(s) 133, 417, 478, 589, 685, 757, 864, 1096, 1122
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 5 cut(s) 11, 237, 245, 543, 1071
MslI CAYNNNNRTG 1 cut(s) 1065
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 4 cut(s) 24, 45, 473, 921
MspR9I CCNGG 4 cut(s) 45, 333, 576, 922
MvaI CCWGG 2 cut(s) 333, 576
NarI GGCGCC 1 cut(s) 6
NciI CCSGG 2 cut(s) 45, 922
NdeI CATATG 1 cut(s) 1132
NdeII GATC 4 cut(s) 17, 156, 349, 910
NlaIII CATG 3 cut(s) 378, 1067, 1120
NlaIV GGNNCC 3 cut(s) 7, 19, 985
NmuCI GTSAC 2 cut(s) 794, 956
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 280
PfeI GAWTC 2 cut(s) 469, 1030
PkrI GCNGC 4 cut(s) 584, 635, 638, 897
PleI GAGTC 3 cut(s) 265, 288, 310
PluTI GGCGCC 1 cut(s) 9
PpsI GAGTC 3 cut(s) 265, 288, 310
PsiI TTATAA 1 cut(s) 699
Psp124BI GAGCTC 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 331, 574
PspFI CCCAGC 1 cut(s) 717
PspGI CCWGG 2 cut(s) 331, 574
PspN4I GGNNCC 3 cut(s) 7, 19, 985
PspPI GGNCC 2 cut(s) 623, 641
PsuI RGATCY 1 cut(s) 17
RsaI GTAC 5 cut(s) 253, 511, 770, 1207, 1232
RsaNI GTAC 5 cut(s) 252, 510, 769, 1206, 1231
RseI CAYNNNNRTG 1 cut(s) 1065
Rsr2I CGGWCCG 1 cut(s) 623
RsrII CGGWCCG 1 cut(s) 623
SacI GAGCTC 1 cut(s) 197
SalI GTCGAC 1 cut(s) 282
SaqAI TTAA 5 cut(s) 11, 237, 245, 543, 1071
SatI GCNGC 4 cut(s) 583, 634, 637, 896
Sau3AI GATC 4 cut(s) 17, 156, 349, 910
Sau96I GGNCC 2 cut(s) 623, 641
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 3 cut(s) 265, 289, 311
ScrFI CCNGG 4 cut(s) 45, 333, 576, 922
SduI GDGCHC 1 cut(s) 197
SexAI ACCWGGT 1 cut(s) 574
SfaNI GCATC 3 cut(s) 73, 387, 967
SfoI GGCGCC 1 cut(s) 7
SgrAI CRCCGGYG 1 cut(s) 23
SinI GGWCC 1 cut(s) 623
SmiMI CAYNNNNRTG 1 cut(s) 1065
SmlI CTYRAG 1 cut(s) 1051
SmoI CTYRAG 1 cut(s) 1051
Sse9I AATT 3 cut(s) 214, 460, 1083
SsiI CCGC 7 cut(s) 80, 582, 621, 633, 639, 658, 896
SspDI GGCGCC 1 cut(s) 5
SspMI CTAG 7 cut(s) 33, 152, 689, 800, 1002, 1080, 1234
SstI GAGCTC 1 cut(s) 197
StyD4I CCNGG 4 cut(s) 43, 331, 574, 920
StyI CCWWGG 3 cut(s) 32, 600, 883
TaaI ACNGT 4 cut(s) 59, 149, 181, 497
TaiI ACGT 1 cut(s) 567
TaqI TCGA 5 cut(s) 283, 615, 837, 975, 1219
TaqII GACCGA 1 cut(s) 114
TasI AATT 3 cut(s) 214, 460, 1083
TatI WGTACW 4 cut(s) 251, 509, 768, 1230
TauI GCSGC 3 cut(s) 585, 636, 898
TfiI GAWTC 2 cut(s) 469, 1030
Tru1I TTAA 5 cut(s) 11, 237, 245, 543, 1071
Tru9I TTAA 5 cut(s) 11, 237, 245, 543, 1071
TscAI CASTG 4 cut(s) 778, 799, 994, 1049
TseFI GTSAC 2 cut(s) 794, 956
TseI GCWGC 1 cut(s) 636
Tsp45I GTSAC 2 cut(s) 794, 956
TspDTI ATGAA 5 cut(s) 408, 800, 869, 945, 997
TspGWI ACGGA 1 cut(s) 82
TspRI CASTG 4 cut(s) 778, 799, 994, 1049
VpaK11BI GGWCC 1 cut(s) 623
XagI CCTNNNNNAGG 1 cut(s) 711
XapI RAATTY 2 cut(s) 214, 460
XceI RCATGY 1 cut(s) 378
XmaJI CCTAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 283
XspI CTAG 7 cut(s) 33, 152, 689, 800, 1002, 1080, 1234
ZrmI AGTACT 1 cut(s) 253
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.