Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Reverse (-)

71679999 .. 71680337

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0595400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAAAAGGCTGAAGCAGAAAAAATTTTACAGGTCAAGAGAGCTGAAGCAGAAGCAGAGTCCAAGTACTTAGCAGGGCTTGGAATAGCTCGCCAGCGCCAGGCCATTGTTGACGGGCTGAGAAATAGTGTTGTTCTATTCTCTGAAAATGTTCCTGGAGCATCAGCCAAGGATGTCATGGACATGGTTCTACTGACTCAATACTTTGACACCATGAAGGAGATCGGAGCATTATCAAAGTCATCATCCGTTTTCATCCCCCACGGGCCAGGTGCTGTGAGAGACGTTGCTTCGCAGATTCGAGAGGGTCTCCTTCAACCCGATTCTGCTCAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

112

Amino Acids

12.09

Weight (kDa)

5.38

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	24
AcuI	CTGAAG	2 cut(s)	33, 66
AfaI	GTAC	1 cut(s)	68
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	3 cut(s)	99, 154, 268
AluBI	AGCT	2 cut(s)	44, 89
AluI	AGCT	2 cut(s)	44, 89
Alw26I	GTCTC	2 cut(s)	276, 314
AlwNI	CAGNNNCTG	1 cut(s)	275
AoxI	GGCC	2 cut(s)	102, 266
ApoI	RAATTY	1 cut(s)	24
Asp700I	GAANNNNTTC	1 cut(s)	150
AspLEI	GCGC	1 cut(s)	99
AspS9I	GGNCC	1 cut(s)	266
BciT130I	CCWGG	3 cut(s)	101, 156, 270
BcoDI	GTCTC	2 cut(s)	276, 314
BfoI	RGCGCY	1 cut(s)	100
BmcAI	AGTACT	1 cut(s)	68
Bme1390I	CCNGG	3 cut(s)	101, 156, 270
BmgT120I	GGNCC	1 cut(s)	266
BmrFI	CCNGG	3 cut(s)	101, 156, 270
BmsI	GCATC	1 cut(s)	170
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpmI	CTGGAG	1 cut(s)	177
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	168, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
BseBI	CCWGG	3 cut(s)	101, 156, 270
BseDI	CCNNGG	2 cut(s)	168, 262
BseGI	GGATG	3 cut(s)	178, 245, 255
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMII	CTCAG	1 cut(s)	110
BshFI	GGCC	2 cut(s)	104, 268
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	276, 314
BsmBI	CGTCTC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	104, 268
Bso31I	GGTCTC	1 cut(s)	314
Bsp143I	GATC	1 cut(s)	222
BspANI	GGCC	2 cut(s)	104, 268
BspCNI	CTCAG	1 cut(s)	111
BspTNI	GGTCTC	1 cut(s)	314
BssECI	CCNNGG	2 cut(s)	168, 262
BssMI	GATC	1 cut(s)	222
BssT1I	CCWWGG	1 cut(s)	168
Bst2UI	CCWGG	3 cut(s)	101, 156, 270
BstC8I	GCNNGC	2 cut(s)	91, 95
BstDEI	CTNAG	2 cut(s)	70, 119
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	178, 245, 255
BstH2I	RGCGCY	1 cut(s)	100
BstHHI	GCGC	1 cut(s)	99
BstKTI	GATC	1 cut(s)	225
BstMAI	GTCTC	2 cut(s)	276, 314
BstMBI	GATC	1 cut(s)	222
BstNI	CCWGG	3 cut(s)	101, 156, 270
BstSCI	CCNGG	3 cut(s)	99, 154, 268
BsuRI	GGCC	2 cut(s)	104, 268
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	178, 245, 255
Cac8I	GCNNGC	2 cut(s)	91, 95
CaiI	CAGNNNCTG	1 cut(s)	275
CfoI	GCGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	266
Csp6I	GTAC	1 cut(s)	67
CviAII	CATG	3 cut(s)	178, 184, 214
CviJI	RGCY	8 cut(s)	11, 44, 79, 89, 104, 118, 167, 268
CviKI_1	RGCY	8 cut(s)	11, 44, 79, 89, 104, 118, 167, 268
CviQI	GTAC	1 cut(s)	67
DdeI	CTNAG	2 cut(s)	70, 119
DpnI	GATC	1 cut(s)	224
DpnII	GATC	1 cut(s)	222
Eco130I	CCWWGG	1 cut(s)	168
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	2 cut(s)	33, 66
EcoRII	CCWGG	3 cut(s)	99, 154, 268
EcoT14I	CCWWGG	1 cut(s)	168
ErhI	CCWWGG	1 cut(s)	168
Esp3I	CGTCTC	1 cut(s)	276
FaeI	CATG	3 cut(s)	181, 187, 217
FaiI	YATR	3 cut(s)	179, 185, 215
FatI	CATG	3 cut(s)	177, 183, 213
FokI	GGATG	3 cut(s)	185, 232, 242
GlaI	GCGC	1 cut(s)	98
GsuI	CTGGAG	1 cut(s)	177
HaeII	RGCGCY	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	104, 268
HhaI	GCGC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	181, 187, 217
Hin6I	GCGC	1 cut(s)	97
HinP1I	GCGC	1 cut(s)	97
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	4 cut(s)	59, 196, 298, 323
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188I	TCNGA	2 cut(s)	145, 227
Hpy188III	TCNNGA	2 cut(s)	37, 302
Hpy8I	GTNNAC	1 cut(s)	112
HpyAV	CCTTC	2 cut(s)	211, 323
HpyCH4IV	ACGT	1 cut(s)	285
HpyF3I	CTNAG	2 cut(s)	70, 119
HpySE526I	ACGT	1 cut(s)	285
Hsp92II	CATG	3 cut(s)	181, 187, 217
HspAI	GCGC	1 cut(s)	97
Kzo9I	GATC	1 cut(s)	222
LmnI	GCTCC	2 cut(s)	158, 227
LpnPI	CCDG	9 cut(s)	17, 60, 86, 107, 113, 141, 168, 255, 282
LweI	GCATC	1 cut(s)	170
MaeII	ACGT	1 cut(s)	285
MalI	GATC	1 cut(s)	224
MboI	GATC	1 cut(s)	222
MluCI	AATT	2 cut(s)	24, 334
MlyI	GAGTC	2 cut(s)	68, 190
MnlI	CCTC	1 cut(s)	298
MroXI	GAANNNNTTC	1 cut(s)	150
MslI	CAYNNNNRTG	1 cut(s)	182
MspR9I	CCNGG	3 cut(s)	101, 156, 270
MvaI	CCWGG	3 cut(s)	101, 156, 270
NdeII	GATC	1 cut(s)	222
NlaIII	CATG	3 cut(s)	181, 187, 217
PdmI	GAANNNNTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	298, 323
PfoI	TCCNGGA	1 cut(s)	154
PleI	GAGTC	2 cut(s)	67, 190
PpsI	GAGTC	2 cut(s)	67, 190
Psp6I	CCWGG	3 cut(s)	99, 154, 268
PspGI	CCWGG	3 cut(s)	99, 154, 268
PspPI	GGNCC	1 cut(s)	266
PstNI	CAGNNNCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	68
RsaNI	GTAC	1 cut(s)	67
RseI	CAYNNNNRTG	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	222
Sau96I	GGNCC	1 cut(s)	266
ScaI	AGTACT	1 cut(s)	68
SchI	GAGTC	2 cut(s)	68, 190
ScrFI	CCNGG	3 cut(s)	101, 156, 270
SetI	ASST	5 cut(s)	36, 46, 91, 274, 288
SfaNI	GCATC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	24, 334
StyD4I	CCNGG	3 cut(s)	99, 154, 268
StyI	CCWWGG	1 cut(s)	168
TaiI	ACGT	1 cut(s)	288
TaqI	TCGA	1 cut(s)	301
TasI	AATT	2 cut(s)	24, 334
TatI	WGTACW	1 cut(s)	66
TfiI	GAWTC	2 cut(s)	298, 323
TspDTI	ATGAA	2 cut(s)	230, 244
TspGWI	ACGGA	1 cut(s)	238
XapI	RAATTY	1 cut(s)	24
XcmI	CCANNNNNNNNNTGG	1 cut(s)	175
XmnI	GAANNNNTTC	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.