histone-lysine N-methyltransferase, H3 lysine-9 specific
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 343 |
| AciI | CCGC | 6 cut(s) | 588, 669, 706, 1005, 1124, 1227 |
| AclI | AACGTT | 1 cut(s) | 1020 |
| AcsI | RAATTY | 1 cut(s) | 328 |
| AcuI | CTGAAG | 1 cut(s) | 480 |
| AfaI | GTAC | 5 cut(s) | 550, 697, 739, 1065, 1256 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 223, 668 |
| AflII | CTTAAG | 1 cut(s) | 122 |
| AgsI | TTSAA | 2 cut(s) | 494, 869 |
| AhlI | ACTAGT | 1 cut(s) | 191 |
| AjnI | CCWGG | 4 cut(s) | 138, 370, 523, 679 |
| AluBI | AGCT | 3 cut(s) | 425, 970, 1080 |
| AluI | AGCT | 3 cut(s) | 425, 970, 1080 |
| Alw21I | GWGCWC | 2 cut(s) | 793, 1082 |
| Alw26I | GTCTC | 1 cut(s) | 848 |
| Alw44I | GTGCAC | 1 cut(s) | 789 |
| Ama87I | CYCGRG | 1 cut(s) | 296 |
| AoxI | GGCC | 2 cut(s) | 214, 463 |
| ApaLI | GTGCAC | 1 cut(s) | 789 |
| ApeKI | GCWGC | 1 cut(s) | 1121 |
| ApoI | RAATTY | 1 cut(s) | 328 |
| AseI | ATTAAT | 1 cut(s) | 626 |
| AspLEI | GCGC | 3 cut(s) | 343, 457, 575 |
| AspS9I | GGNCC | 3 cut(s) | 136, 659, 677 |
| AsuC2I | CCSGG | 2 cut(s) | 297, 298 |
| AsuHPI | GGTGA | 1 cut(s) | 602 |
| AvaI | CYCGRG | 1 cut(s) | 296 |
| AvaII | GGWCC | 3 cut(s) | 136, 659, 677 |
| BaeGI | GKGCMC | 1 cut(s) | 793 |
| BanII | GRGCYC | 1 cut(s) | 1082 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 1238 |
| BbsI | GAAGAC | 1 cut(s) | 830 |
| Bbv12I | GWGCWC | 2 cut(s) | 793, 1082 |
| BbvI | GCAGC | 1 cut(s) | 1108 |
| BccI | CCATC | 4 cut(s) | 206, 608, 941, 1190 |
| BciT130I | CCWGG | 4 cut(s) | 140, 372, 525, 681 |
| BcnI | CCSGG | 2 cut(s) | 297, 298 |
| BcoDI | GTCTC | 1 cut(s) | 848 |
| BcuI | ACTAGT | 1 cut(s) | 191 |
| BfaI | CTAG | 4 cut(s) | 192, 1026, 1104, 1258 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BfoI | RGCGCY | 1 cut(s) | 458 |
| BfrI | CTTAAG | 1 cut(s) | 122 |
| BisI | GCNGC | 3 cut(s) | 670, 1005, 1122 |
| BlsI | GCNGC | 3 cut(s) | 671, 1006, 1123 |
| Bme1390I | CCNGG | 6 cut(s) | 140, 297, 298, 372, 525, 681 |
| Bme18I | GGWCC | 3 cut(s) | 136, 659, 677 |
| BmeT110I | CYCGRG | 1 cut(s) | 296 |
| BmgT120I | GGNCC | 3 cut(s) | 136, 659, 677 |
| BmrFI | CCNGG | 6 cut(s) | 140, 297, 298, 372, 525, 681 |
| BmsI | GCATC | 2 cut(s) | 727, 991 |
| BpiI | GAAGAC | 1 cut(s) | 830 |
| BpuEI | CTTGAG | 1 cut(s) | 746 |
| BpuMI | CCSGG | 2 cut(s) | 297, 298 |
| Bsa29I | ATCGAT | 2 cut(s) | 90, 438 |
| BsaAI | YACGTR | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 5 cut(s) | 139, 163, 296, 371, 524 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 223, 668 |
| Bse1I | ACTGG | 2 cut(s) | 45, 794 |
| Bse3DI | GCAATG | 2 cut(s) | 1139, 1222 |
| BseBI | CCWGG | 4 cut(s) | 140, 372, 525, 681 |
| BseCI | ATCGAT | 2 cut(s) | 90, 438 |
| BseDI | CCNNGG | 5 cut(s) | 139, 163, 296, 371, 524 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 223, 668 |
| BseMI | GCAATG | 2 cut(s) | 1139, 1222 |
| BseMII | CTCAG | 2 cut(s) | 716, 978 |
| BseNI | ACTGG | 2 cut(s) | 45, 794 |
| BseSI | GKGCMC | 1 cut(s) | 793 |
| BseXI | GCAGC | 1 cut(s) | 1108 |
| BseYI | CCCAGC | 1 cut(s) | 753 |
| BsgI | GTGCAG | 2 cut(s) | 550, 1251 |
| Bsh1236I | CGCG | 1 cut(s) | 343 |
| BshFI | GGCC | 2 cut(s) | 216, 465 |
| BshVI | ATCGAT | 2 cut(s) | 90, 438 |
| BsiHKAI | GWGCWC | 2 cut(s) | 793, 1082 |
| BsiHKCI | CYCGRG | 1 cut(s) | 296 |
| BsiSI | CCGG | 1 cut(s) | 297 |
| BsiWI | CGTACG | 1 cut(s) | 737 |
| BslFI | GGGAC | 1 cut(s) | 785 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 223, 668 |
| BsmAI | GTCTC | 1 cut(s) | 848 |
| BsmFI | GGGAC | 1 cut(s) | 785 |
| BsmI | GAATGC | 2 cut(s) | 144, 417 |
| BsnI | GGCC | 2 cut(s) | 216, 465 |
| BsoBI | CYCGRG | 1 cut(s) | 296 |
| Bsp1286I | GDGCHC | 2 cut(s) | 793, 1082 |
| Bsp143I | GATC | 2 cut(s) | 87, 91 |
| BspACI | CCGC | 6 cut(s) | 588, 669, 706, 1005, 1124, 1227 |
| BspANI | GGCC | 2 cut(s) | 216, 465 |
| BspCNI | CTCAG | 2 cut(s) | 715, 979 |
| BspDI | ATCGAT | 2 cut(s) | 90, 438 |
| BspFNI | CGCG | 1 cut(s) | 343 |
| BspHI | TCATGA | 1 cut(s) | 1087 |
| BspTI | CTTAAG | 1 cut(s) | 122 |
| BsrDI | GCAATG | 2 cut(s) | 1139, 1222 |
| BsrI | ACTGG | 2 cut(s) | 45, 794 |
| BssECI | CCNNGG | 5 cut(s) | 139, 163, 296, 371, 524 |
| BssMI | GATC | 2 cut(s) | 87, 91 |
| Bst2UI | CCWGG | 4 cut(s) | 140, 372, 525, 681 |
| Bst4CI | ACNGT | 5 cut(s) | 268, 401, 548, 695, 842 |
| Bst6I | CTCTTC | 2 cut(s) | 20, 1064 |
| BstAFI | CTTAAG | 1 cut(s) | 122 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 889 |
| BstBAI | YACGTR | 1 cut(s) | 207 |
| BstC8I | GCNNGC | 2 cut(s) | 881, 968 |
| BstDEI | CTNAG | 3 cut(s) | 702, 818, 987 |
| BstDSI | CCRYGG | 1 cut(s) | 163 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 221 |
| BstFNI | CGCG | 1 cut(s) | 343 |
| BstH2I | RGCGCY | 1 cut(s) | 458 |
| BstHHI | GCGC | 3 cut(s) | 343, 457, 575 |
| BstKTI | GATC | 2 cut(s) | 90, 94 |
| BstMAI | GTCTC | 1 cut(s) | 848 |
| BstMBI | GATC | 2 cut(s) | 87, 91 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 889 |
| BstNI | CCWGG | 4 cut(s) | 140, 372, 525, 681 |
| BstSCI | CCNGG | 6 cut(s) | 138, 295, 296, 370, 523, 679 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstSLI | GKGCMC | 1 cut(s) | 793 |
| BstSNI | TACGTA | 1 cut(s) | 207 |
| BstUI | CGCG | 1 cut(s) | 343 |
| BstV1I | GCAGC | 1 cut(s) | 1108 |
| BstV2I | GAAGAC | 1 cut(s) | 830 |
| Bsu15I | ATCGAT | 2 cut(s) | 90, 438 |
| BsuRI | GGCC | 2 cut(s) | 216, 465 |
| BsuTUI | ATCGAT | 2 cut(s) | 90, 438 |
| BtgI | CCRYGG | 1 cut(s) | 163 |
| BtgZI | GCGATG | 1 cut(s) | 939 |
| BtsIMutI | CAGTG | 1 cut(s) | 557 |
| Cac8I | GCNNGC | 2 cut(s) | 881, 968 |
| CciI | TCATGA | 1 cut(s) | 1087 |
| CfoI | GCGC | 3 cut(s) | 343, 457, 575 |
| Cfr13I | GGNCC | 3 cut(s) | 136, 659, 677 |
| Cfr9I | CCCGGG | 1 cut(s) | 296 |
| ClaI | ATCGAT | 2 cut(s) | 90, 438 |
| CseI | GACGC | 1 cut(s) | 166 |
| CsiI | ACCWGGT | 1 cut(s) | 679 |
| Csp6I | GTAC | 5 cut(s) | 549, 696, 738, 1064, 1255 |
| CviAII | CATG | 4 cut(s) | 170, 893, 1013, 1088 |
| CviQI | GTAC | 5 cut(s) | 549, 696, 738, 1064, 1255 |
| DdeI | CTNAG | 3 cut(s) | 702, 818, 987 |
| DpnI | GATC | 2 cut(s) | 89, 93 |
| DpnII | GATC | 2 cut(s) | 87, 91 |
| DraI | TTTAAA | 1 cut(s) | 285 |
| Eam1104I | CTCTTC | 2 cut(s) | 20, 1064 |
| EarI | CTCTTC | 2 cut(s) | 20, 1064 |
| Ecl136II | GAGCTC | 1 cut(s) | 1080 |
| Eco105I | TACGTA | 1 cut(s) | 207 |
| Eco147I | AGGCCT | 1 cut(s) | 465 |
| Eco24I | GRGCYC | 1 cut(s) | 1082 |
| Eco47I | GGWCC | 3 cut(s) | 136, 659, 677 |
| Eco53kI | GAGCTC | 1 cut(s) | 1080 |
| Eco57I | CTGAAG | 1 cut(s) | 480 |
| Eco88I | CYCGRG | 1 cut(s) | 296 |
| EcoICRI | GAGCTC | 1 cut(s) | 1080 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 221 |
| EcoRII | CCWGG | 4 cut(s) | 138, 370, 523, 679 |
| EcoT22I | ATGCAT | 1 cut(s) | 894 |
| EcoT38I | GRGCYC | 1 cut(s) | 1082 |
| FaeI | CATG | 4 cut(s) | 173, 896, 1016, 1091 |
| FaqI | GGGAC | 1 cut(s) | 785 |
| FatI | CATG | 4 cut(s) | 169, 892, 1012, 1087 |
| FauI | CCCGC | 1 cut(s) | 699 |
| FauNDI | CATATG | 1 cut(s) | 1156 |
| Fnu4HI | GCNGC | 3 cut(s) | 670, 1005, 1122 |
| FriOI | GRGCYC | 1 cut(s) | 1082 |
| Fsp4HI | GCNGC | 3 cut(s) | 670, 1005, 1122 |
| FspBI | CTAG | 4 cut(s) | 192, 1026, 1104, 1258 |
| GlaI | GCGC | 3 cut(s) | 342, 456, 574 |
| GluI | GCNGC | 3 cut(s) | 670, 1005, 1122 |
| GsaI | CCCAGC | 1 cut(s) | 757 |
| HaeII | RGCGCY | 1 cut(s) | 458 |
| HaeIII | GGCC | 2 cut(s) | 216, 465 |
| HapII | CCGG | 1 cut(s) | 297 |
| HgaI | GACGC | 1 cut(s) | 166 |
| HhaI | GCGC | 3 cut(s) | 343, 457, 575 |
| Hin1II | CATG | 4 cut(s) | 173, 896, 1016, 1091 |
| Hin6I | GCGC | 3 cut(s) | 341, 455, 573 |
| HinP1I | GCGC | 3 cut(s) | 341, 455, 573 |
| HincII | GTYRAC | 3 cut(s) | 229, 691, 838 |
| HindII | GTYRAC | 3 cut(s) | 229, 691, 838 |
| HinfI | GANTC | 2 cut(s) | 960, 1098 |
| HpaI | GTTAAC | 2 cut(s) | 229, 691 |
| HpaII | CCGG | 1 cut(s) | 297 |
| HphI | GGTGA | 1 cut(s) | 602 |
| Hpy166II | GTNNAC | 9 cut(s) | 167, 229, 320, 358, 505, 677, 691, 791, 838 |
| Hpy188I | TCNGA | 2 cut(s) | 976, 1245 |
| Hpy188III | TCNNGA | 5 cut(s) | 404, 906, 957, 1088, 1193 |
| Hpy8I | GTNNAC | 9 cut(s) | 167, 229, 320, 358, 505, 677, 691, 791, 838 |
| HpyAV | CCTTC | 2 cut(s) | 455, 792 |
| HpyCH4III | ACNGT | 5 cut(s) | 268, 401, 548, 695, 842 |
| HpyCH4IV | ACGT | 4 cut(s) | 206, 432, 603, 1020 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 889 |
| HpyF3I | CTNAG | 3 cut(s) | 702, 818, 987 |
| HpySE526I | ACGT | 4 cut(s) | 206, 432, 603, 1020 |
| Hsp92II | CATG | 4 cut(s) | 173, 896, 1016, 1091 |
| HspAI | GCGC | 3 cut(s) | 341, 455, 573 |
| KspAI | GTTAAC | 2 cut(s) | 229, 691 |
| Kzo9I | GATC | 2 cut(s) | 87, 91 |
| LmnI | GCTCC | 1 cut(s) | 526 |
| Lsp1109I | GCAGC | 1 cut(s) | 1108 |
| LweI | GCATC | 2 cut(s) | 727, 991 |
| MabI | ACCWGGT | 1 cut(s) | 679 |
| MaeI | CTAG | 4 cut(s) | 192, 1026, 1104, 1258 |
| MaeII | ACGT | 4 cut(s) | 206, 432, 603, 1020 |
| MaeIII | GTNAC | 4 cut(s) | 395, 928, 1016, 1021 |
| MalI | GATC | 2 cut(s) | 89, 93 |
| MboI | GATC | 2 cut(s) | 87, 91 |
| MboII | GAAGA | 5 cut(s) | 16, 37, 633, 835, 1051 |
| MhlI | GDGCHC | 2 cut(s) | 793, 1082 |
| MlyI | GAGTC | 1 cut(s) | 1092 |
| MmeI | TCCRAC | 1 cut(s) | 1223 |
| MnlI | CCTC | 7 cut(s) | 338, 456, 625, 721, 944, 1067, 1146 |
| Mph1103I | ATGCAT | 1 cut(s) | 894 |
| MseI | TTAA | 9 cut(s) | 123, 228, 273, 284, 468, 477, 626, 690, 1206 |
| MslI | CAYNNNNRTG | 4 cut(s) | 796, 1044, 1089, 1227 |
| MspA1I | CMGCKG | 1 cut(s) | 706 |
| MspCI | CTTAAG | 1 cut(s) | 122 |
| MspI | CCGG | 1 cut(s) | 297 |
| MspR9I | CCNGG | 6 cut(s) | 140, 297, 298, 372, 525, 681 |
| Mva1269I | GAATGC | 2 cut(s) | 144, 417 |
| MvaI | CCWGG | 4 cut(s) | 140, 372, 525, 681 |
| MvnI | CGCG | 1 cut(s) | 343 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 889 |
| NciI | CCSGG | 2 cut(s) | 297, 298 |
| NdeI | CATATG | 1 cut(s) | 1156 |
| NdeII | GATC | 2 cut(s) | 87, 91 |
| NlaIII | CATG | 4 cut(s) | 173, 896, 1016, 1091 |
| NmuCI | GTSAC | 1 cut(s) | 928 |
| NsiI | ATGCAT | 1 cut(s) | 894 |
| PagI | TCATGA | 1 cut(s) | 1087 |
| PceI | AGGCCT | 1 cut(s) | 465 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 286 |
| PctI | GAATGC | 2 cut(s) | 144, 417 |
| PfeI | GAWTC | 1 cut(s) | 960 |
| Pfl23II | CGTACG | 1 cut(s) | 737 |
| PflFI | GACNNNGTC | 1 cut(s) | 176 |
| PkrI | GCNGC | 3 cut(s) | 671, 1006, 1123 |
| PleI | GAGTC | 1 cut(s) | 1092 |
| PpsI | GAGTC | 1 cut(s) | 1092 |
| Ppu21I | YACGTR | 1 cut(s) | 207 |
| PshBI | ATTAAT | 1 cut(s) | 626 |
| Psp124BI | GAGCTC | 1 cut(s) | 1082 |
| Psp1406I | AACGTT | 1 cut(s) | 1020 |
| Psp6I | CCWGG | 4 cut(s) | 138, 370, 523, 679 |
| PspFI | CCCAGC | 1 cut(s) | 753 |
| PspGI | CCWGG | 4 cut(s) | 138, 370, 523, 679 |
| PspLI | CGTACG | 1 cut(s) | 737 |
| PspPI | GGNCC | 3 cut(s) | 136, 659, 677 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 318, 350 |
| PsyI | GACNNNGTC | 1 cut(s) | 176 |
| RsaI | GTAC | 5 cut(s) | 550, 697, 739, 1065, 1256 |
| RsaNI | GTAC | 5 cut(s) | 549, 696, 738, 1064, 1255 |
| RseI | CAYNNNNRTG | 4 cut(s) | 796, 1044, 1089, 1227 |
| SacI | GAGCTC | 1 cut(s) | 1082 |
| SaqAI | TTAA | 9 cut(s) | 123, 228, 273, 284, 468, 477, 626, 690, 1206 |
| SatI | GCNGC | 3 cut(s) | 670, 1005, 1122 |
| Sau3AI | GATC | 2 cut(s) | 87, 91 |
| Sau96I | GGNCC | 3 cut(s) | 136, 659, 677 |
| SchI | GAGTC | 1 cut(s) | 1092 |
| ScrFI | CCNGG | 6 cut(s) | 140, 297, 298, 372, 525, 681 |
| SduI | GDGCHC | 2 cut(s) | 793, 1082 |
| SexAI | ACCWGGT | 1 cut(s) | 679 |
| SfaNI | GCATC | 2 cut(s) | 727, 991 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SinI | GGWCC | 3 cut(s) | 136, 659, 677 |
| SmaI | CCCGGG | 1 cut(s) | 298 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 796, 1044, 1089, 1227 |
| SmlI | CTYRAG | 2 cut(s) | 122, 725 |
| SmoI | CTYRAG | 2 cut(s) | 122, 725 |
| SnaBI | TACGTA | 1 cut(s) | 207 |
| SpeI | ACTAGT | 1 cut(s) | 191 |
| SseBI | AGGCCT | 1 cut(s) | 465 |
| SsiI | CCGC | 6 cut(s) | 588, 669, 706, 1005, 1124, 1227 |
| SspI | AATATT | 1 cut(s) | 412 |
| SspMI | CTAG | 4 cut(s) | 192, 1026, 1104, 1258 |
| SstI | GAGCTC | 1 cut(s) | 1082 |
| StuI | AGGCCT | 1 cut(s) | 465 |
| StyD4I | CCNGG | 6 cut(s) | 138, 295, 296, 370, 523, 679 |
| TaaI | ACNGT | 5 cut(s) | 268, 401, 548, 695, 842 |
| TaiI | ACGT | 4 cut(s) | 209, 435, 606, 1023 |
| TaqI | TCGA | 3 cut(s) | 90, 438, 721 |
| TaqII | GACCGA | 1 cut(s) | 1178 |
| TatI | WGTACW | 2 cut(s) | 548, 1254 |
| TauI | GCSGC | 2 cut(s) | 672, 1007 |
| TfiI | GAWTC | 1 cut(s) | 960 |
| Tru1I | TTAA | 9 cut(s) | 123, 228, 273, 284, 468, 477, 626, 690, 1206 |
| Tru9I | TTAA | 9 cut(s) | 123, 228, 273, 284, 468, 477, 626, 690, 1206 |
| TscAI | CASTG | 1 cut(s) | 564 |
| TseFI | GTSAC | 1 cut(s) | 928 |
| TseI | GCWGC | 1 cut(s) | 1121 |
| Tsp45I | GTSAC | 1 cut(s) | 928 |
| TspDTI | ATGAA | 6 cut(s) | 17, 116, 728, 846, 1143, 1185 |
| TspGWI | ACGGA | 2 cut(s) | 152, 755 |
| TspMI | CCCGGG | 1 cut(s) | 296 |
| TspRI | CASTG | 1 cut(s) | 564 |
| Tth111I | GACNNNGTC | 1 cut(s) | 176 |
| Vha464I | CTTAAG | 1 cut(s) | 122 |
| VneI | GTGCAC | 1 cut(s) | 789 |
| VpaK11BI | GGWCC | 3 cut(s) | 136, 659, 677 |
| VspI | ATTAAT | 1 cut(s) | 626 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 221 |
| XapI | RAATTY | 1 cut(s) | 328 |
| XmaI | CCCGGG | 1 cut(s) | 296 |
| XspI | CTAG | 4 cut(s) | 192, 1026, 1104, 1258 |
| Zsp2I | ATGCAT | 1 cut(s) | 894 |