pycom13g11320

histone-lysine N-methyltransferase, H3 lysine-9 specific

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
7769815 .. 7772226
2412 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11320.6

Sequence Viewer

Length: 1260 bp
ATGAAGATGATGTTGATAACGCAGAAGAGATTGTTTATACTGGTCAAGGTGGAAATGATTTGCTTGGTAATAAACAACAAATTGCAGATCGATCAAGTTATGAAACGGGGTAATTTGGCTCTTAAGAATAATATGGACCAGGGCATTCCTGTTAGAGTTGTCCGTGGACATGACTGCGTCAATAGTTATACTAGTAAAGTTTATACGTATGATGGCCTATACAAGGTTAACAATTATTGGGCAGAAAAGGGTGTTGCTGGATTTACCGTGTTTAAGTATCGTTTAAAGCGACTTCCCGGGCAAGATAGTTTGCGTAGTAAACAGGTAAATTTTGTTCGTGCGCGAGGGTCTAAAGTTCACGCTGAATTACCTGGGTTGGTGTGCAAGGACATTTGTTACGGTCAAGAAAATATTTGCATTCCAGCTACCAACGTCATCGATAAACCTCCTGTAGCGCCTGAAGGCCTTAAATATATTAACTCTATTATAGTTGAAAAAGATGTGAACATTCCACCGAACGCTCCTGGGTGCAGTTGCAAAGGAAACTGTACTAATCCACTGACTTGCTCTTGCGCTCAACTGAATGGCGGTGATTTTCCTTACGTTAGTAAAGATGGTGGAAGATTAATTGAGGCAAAGGCTGTTGTGTTTGAGTGTGGTCCAAATTGCGGCTGTGGACCTGGTTGTGTTAACCGTACATCTCAGCGGGGAATGAAGCATCGACTTGAGGTATTTCGTACGGATTACAAAGGCTGGGGTGTTAGGTCGTGGGACTTTATTCCTTCTGGTGCACCAGTATGTGAATACATTGGAGTTCTTAGGAAGACTGATGAAGTTGACAGTCTCTTGGGGAACGAATATATATTTGAAATTGATTGCTGGCATACAATGCATGGGATTGGGTCAAGAGAGAAGCGAATGTGCGATGTGACTATTCCAAATAGTGATGGAGGGTCAGGATTCAGCAAGCTATCAGAAAGTGAGCCTGAGTTTTGCATAGATGCCGCTTCTCATGGTAACGTTACTAGATATATCAATCATAGTTGTGAGCCTAACCTCTTCGTACAATGTGTTTTGAGCTCTCATCATGATGTTAGACTCGCTAGAATTGTGTTATTCGCTGCGGATAATATACCTCCATTGCAGGAACTTTCATATGACTATGGTTATGAACTTGATAGCGTGGTCGGTCTTGATGGAAAAATTAAGCAGTTAGACTGCCATTGCGGTGCAGTTGGCTGTCGGAAGCGTTTGTACTAG

Protein Analysis

420

Amino Acids

46.6

Weight (kDa)

8.43

Isoelectric Point (pI)

35.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 343
AciI CCGC 6 cut(s) 588, 669, 706, 1005, 1124, 1227
AclI AACGTT 1 cut(s) 1020
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 480
AfaI GTAC 5 cut(s) 550, 697, 739, 1065, 1256
AfiI CCNNNNNNNGG 2 cut(s) 223, 668
AflII CTTAAG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 494, 869
AhlI ACTAGT 1 cut(s) 191
AjnI CCWGG 4 cut(s) 138, 370, 523, 679
AluBI AGCT 3 cut(s) 425, 970, 1080
AluI AGCT 3 cut(s) 425, 970, 1080
Alw21I GWGCWC 2 cut(s) 793, 1082
Alw26I GTCTC 1 cut(s) 848
Alw44I GTGCAC 1 cut(s) 789
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 2 cut(s) 214, 463
ApaLI GTGCAC 1 cut(s) 789
ApeKI GCWGC 1 cut(s) 1121
ApoI RAATTY 1 cut(s) 328
AseI ATTAAT 1 cut(s) 626
AspLEI GCGC 3 cut(s) 343, 457, 575
AspS9I GGNCC 3 cut(s) 136, 659, 677
AsuC2I CCSGG 2 cut(s) 297, 298
AsuHPI GGTGA 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 3 cut(s) 136, 659, 677
BaeGI GKGCMC 1 cut(s) 793
BanII GRGCYC 1 cut(s) 1082
BarI GAAGNNNNNNTAC 1 cut(s) 1238
BbsI GAAGAC 1 cut(s) 830
Bbv12I GWGCWC 2 cut(s) 793, 1082
BbvI GCAGC 1 cut(s) 1108
BccI CCATC 4 cut(s) 206, 608, 941, 1190
BciT130I CCWGG 4 cut(s) 140, 372, 525, 681
BcnI CCSGG 2 cut(s) 297, 298
BcoDI GTCTC 1 cut(s) 848
BcuI ACTAGT 1 cut(s) 191
BfaI CTAG 4 cut(s) 192, 1026, 1104, 1258
BfmI CTRYAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 458
BfrI CTTAAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 670, 1005, 1122
BlsI GCNGC 3 cut(s) 671, 1006, 1123
Bme1390I CCNGG 6 cut(s) 140, 297, 298, 372, 525, 681
Bme18I GGWCC 3 cut(s) 136, 659, 677
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 3 cut(s) 136, 659, 677
BmrFI CCNGG 6 cut(s) 140, 297, 298, 372, 525, 681
BmsI GCATC 2 cut(s) 727, 991
BpiI GAAGAC 1 cut(s) 830
BpuEI CTTGAG 1 cut(s) 746
BpuMI CCSGG 2 cut(s) 297, 298
Bsa29I ATCGAT 2 cut(s) 90, 438
BsaAI YACGTR 1 cut(s) 207
BsaJI CCNNGG 5 cut(s) 139, 163, 296, 371, 524
Bsc4I CCNNNNNNNGG 2 cut(s) 223, 668
Bse1I ACTGG 2 cut(s) 45, 794
Bse3DI GCAATG 2 cut(s) 1139, 1222
BseBI CCWGG 4 cut(s) 140, 372, 525, 681
BseCI ATCGAT 2 cut(s) 90, 438
BseDI CCNNGG 5 cut(s) 139, 163, 296, 371, 524
BseLI CCNNNNNNNGG 2 cut(s) 223, 668
BseMI GCAATG 2 cut(s) 1139, 1222
BseMII CTCAG 2 cut(s) 716, 978
BseNI ACTGG 2 cut(s) 45, 794
BseSI GKGCMC 1 cut(s) 793
BseXI GCAGC 1 cut(s) 1108
BseYI CCCAGC 1 cut(s) 753
BsgI GTGCAG 2 cut(s) 550, 1251
Bsh1236I CGCG 1 cut(s) 343
BshFI GGCC 2 cut(s) 216, 465
BshVI ATCGAT 2 cut(s) 90, 438
BsiHKAI GWGCWC 2 cut(s) 793, 1082
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 1 cut(s) 297
BsiWI CGTACG 1 cut(s) 737
BslFI GGGAC 1 cut(s) 785
BslI CCNNNNNNNGG 2 cut(s) 223, 668
BsmAI GTCTC 1 cut(s) 848
BsmFI GGGAC 1 cut(s) 785
BsmI GAATGC 2 cut(s) 144, 417
BsnI GGCC 2 cut(s) 216, 465
BsoBI CYCGRG 1 cut(s) 296
Bsp1286I GDGCHC 2 cut(s) 793, 1082
Bsp143I GATC 2 cut(s) 87, 91
BspACI CCGC 6 cut(s) 588, 669, 706, 1005, 1124, 1227
BspANI GGCC 2 cut(s) 216, 465
BspCNI CTCAG 2 cut(s) 715, 979
BspDI ATCGAT 2 cut(s) 90, 438
BspFNI CGCG 1 cut(s) 343
BspHI TCATGA 1 cut(s) 1087
BspTI CTTAAG 1 cut(s) 122
BsrDI GCAATG 2 cut(s) 1139, 1222
BsrI ACTGG 2 cut(s) 45, 794
BssECI CCNNGG 5 cut(s) 139, 163, 296, 371, 524
BssMI GATC 2 cut(s) 87, 91
Bst2UI CCWGG 4 cut(s) 140, 372, 525, 681
Bst4CI ACNGT 5 cut(s) 268, 401, 548, 695, 842
Bst6I CTCTTC 2 cut(s) 20, 1064
BstAFI CTTAAG 1 cut(s) 122
BstAPI GCANNNNNTGC 1 cut(s) 889
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 881, 968
BstDEI CTNAG 3 cut(s) 702, 818, 987
BstDSI CCRYGG 1 cut(s) 163
BstENI CCTNNNNNAGG 1 cut(s) 221
BstFNI CGCG 1 cut(s) 343
BstH2I RGCGCY 1 cut(s) 458
BstHHI GCGC 3 cut(s) 343, 457, 575
BstKTI GATC 2 cut(s) 90, 94
BstMAI GTCTC 1 cut(s) 848
BstMBI GATC 2 cut(s) 87, 91
BstMWI GCNNNNNNNGC 1 cut(s) 889
BstNI CCWGG 4 cut(s) 140, 372, 525, 681
BstSCI CCNGG 6 cut(s) 138, 295, 296, 370, 523, 679
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 793
BstSNI TACGTA 1 cut(s) 207
BstUI CGCG 1 cut(s) 343
BstV1I GCAGC 1 cut(s) 1108
BstV2I GAAGAC 1 cut(s) 830
Bsu15I ATCGAT 2 cut(s) 90, 438
BsuRI GGCC 2 cut(s) 216, 465
BsuTUI ATCGAT 2 cut(s) 90, 438
BtgI CCRYGG 1 cut(s) 163
BtgZI GCGATG 1 cut(s) 939
BtsIMutI CAGTG 1 cut(s) 557
Cac8I GCNNGC 2 cut(s) 881, 968
CciI TCATGA 1 cut(s) 1087
CfoI GCGC 3 cut(s) 343, 457, 575
Cfr13I GGNCC 3 cut(s) 136, 659, 677
Cfr9I CCCGGG 1 cut(s) 296
ClaI ATCGAT 2 cut(s) 90, 438
CseI GACGC 1 cut(s) 166
CsiI ACCWGGT 1 cut(s) 679
Csp6I GTAC 5 cut(s) 549, 696, 738, 1064, 1255
CviAII CATG 4 cut(s) 170, 893, 1013, 1088
CviQI GTAC 5 cut(s) 549, 696, 738, 1064, 1255
DdeI CTNAG 3 cut(s) 702, 818, 987
DpnI GATC 2 cut(s) 89, 93
DpnII GATC 2 cut(s) 87, 91
DraI TTTAAA 1 cut(s) 285
Eam1104I CTCTTC 2 cut(s) 20, 1064
EarI CTCTTC 2 cut(s) 20, 1064
Ecl136II GAGCTC 1 cut(s) 1080
Eco105I TACGTA 1 cut(s) 207
Eco147I AGGCCT 1 cut(s) 465
Eco24I GRGCYC 1 cut(s) 1082
Eco47I GGWCC 3 cut(s) 136, 659, 677
Eco53kI GAGCTC 1 cut(s) 1080
Eco57I CTGAAG 1 cut(s) 480
Eco88I CYCGRG 1 cut(s) 296
EcoICRI GAGCTC 1 cut(s) 1080
EcoNI CCTNNNNNAGG 1 cut(s) 221
EcoRII CCWGG 4 cut(s) 138, 370, 523, 679
EcoT22I ATGCAT 1 cut(s) 894
EcoT38I GRGCYC 1 cut(s) 1082
FaeI CATG 4 cut(s) 173, 896, 1016, 1091
FaqI GGGAC 1 cut(s) 785
FatI CATG 4 cut(s) 169, 892, 1012, 1087
FauI CCCGC 1 cut(s) 699
FauNDI CATATG 1 cut(s) 1156
Fnu4HI GCNGC 3 cut(s) 670, 1005, 1122
FriOI GRGCYC 1 cut(s) 1082
Fsp4HI GCNGC 3 cut(s) 670, 1005, 1122
FspBI CTAG 4 cut(s) 192, 1026, 1104, 1258
GlaI GCGC 3 cut(s) 342, 456, 574
GluI GCNGC 3 cut(s) 670, 1005, 1122
GsaI CCCAGC 1 cut(s) 757
HaeII RGCGCY 1 cut(s) 458
HaeIII GGCC 2 cut(s) 216, 465
HapII CCGG 1 cut(s) 297
HgaI GACGC 1 cut(s) 166
HhaI GCGC 3 cut(s) 343, 457, 575
Hin1II CATG 4 cut(s) 173, 896, 1016, 1091
Hin6I GCGC 3 cut(s) 341, 455, 573
HinP1I GCGC 3 cut(s) 341, 455, 573
HincII GTYRAC 3 cut(s) 229, 691, 838
HindII GTYRAC 3 cut(s) 229, 691, 838
HinfI GANTC 2 cut(s) 960, 1098
HpaI GTTAAC 2 cut(s) 229, 691
HpaII CCGG 1 cut(s) 297
HphI GGTGA 1 cut(s) 602
Hpy166II GTNNAC 9 cut(s) 167, 229, 320, 358, 505, 677, 691, 791, 838
Hpy188I TCNGA 2 cut(s) 976, 1245
Hpy188III TCNNGA 5 cut(s) 404, 906, 957, 1088, 1193
Hpy8I GTNNAC 9 cut(s) 167, 229, 320, 358, 505, 677, 691, 791, 838
HpyAV CCTTC 2 cut(s) 455, 792
HpyCH4III ACNGT 5 cut(s) 268, 401, 548, 695, 842
HpyCH4IV ACGT 4 cut(s) 206, 432, 603, 1020
HpyF10VI GCNNNNNNNGC 1 cut(s) 889
HpyF3I CTNAG 3 cut(s) 702, 818, 987
HpySE526I ACGT 4 cut(s) 206, 432, 603, 1020
Hsp92II CATG 4 cut(s) 173, 896, 1016, 1091
HspAI GCGC 3 cut(s) 341, 455, 573
KspAI GTTAAC 2 cut(s) 229, 691
Kzo9I GATC 2 cut(s) 87, 91
LmnI GCTCC 1 cut(s) 526
Lsp1109I GCAGC 1 cut(s) 1108
LweI GCATC 2 cut(s) 727, 991
MabI ACCWGGT 1 cut(s) 679
MaeI CTAG 4 cut(s) 192, 1026, 1104, 1258
MaeII ACGT 4 cut(s) 206, 432, 603, 1020
MaeIII GTNAC 4 cut(s) 395, 928, 1016, 1021
MalI GATC 2 cut(s) 89, 93
MboI GATC 2 cut(s) 87, 91
MboII GAAGA 5 cut(s) 16, 37, 633, 835, 1051
MhlI GDGCHC 2 cut(s) 793, 1082
MlyI GAGTC 1 cut(s) 1092
MmeI TCCRAC 1 cut(s) 1223
MnlI CCTC 7 cut(s) 338, 456, 625, 721, 944, 1067, 1146
Mph1103I ATGCAT 1 cut(s) 894
MseI TTAA 9 cut(s) 123, 228, 273, 284, 468, 477, 626, 690, 1206
MslI CAYNNNNRTG 4 cut(s) 796, 1044, 1089, 1227
MspA1I CMGCKG 1 cut(s) 706
MspCI CTTAAG 1 cut(s) 122
MspI CCGG 1 cut(s) 297
MspR9I CCNGG 6 cut(s) 140, 297, 298, 372, 525, 681
Mva1269I GAATGC 2 cut(s) 144, 417
MvaI CCWGG 4 cut(s) 140, 372, 525, 681
MvnI CGCG 1 cut(s) 343
MwoI GCNNNNNNNGC 1 cut(s) 889
NciI CCSGG 2 cut(s) 297, 298
NdeI CATATG 1 cut(s) 1156
NdeII GATC 2 cut(s) 87, 91
NlaIII CATG 4 cut(s) 173, 896, 1016, 1091
NmuCI GTSAC 1 cut(s) 928
NsiI ATGCAT 1 cut(s) 894
PagI TCATGA 1 cut(s) 1087
PceI AGGCCT 1 cut(s) 465
PcsI WCGNNNNNNNCGW 1 cut(s) 286
PctI GAATGC 2 cut(s) 144, 417
PfeI GAWTC 1 cut(s) 960
Pfl23II CGTACG 1 cut(s) 737
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 3 cut(s) 671, 1006, 1123
PleI GAGTC 1 cut(s) 1092
PpsI GAGTC 1 cut(s) 1092
Ppu21I YACGTR 1 cut(s) 207
PshBI ATTAAT 1 cut(s) 626
Psp124BI GAGCTC 1 cut(s) 1082
Psp1406I AACGTT 1 cut(s) 1020
Psp6I CCWGG 4 cut(s) 138, 370, 523, 679
PspFI CCCAGC 1 cut(s) 753
PspGI CCWGG 4 cut(s) 138, 370, 523, 679
PspLI CGTACG 1 cut(s) 737
PspPI GGNCC 3 cut(s) 136, 659, 677
PsrI GAACNNNNNNTAC 2 cut(s) 318, 350
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 5 cut(s) 550, 697, 739, 1065, 1256
RsaNI GTAC 5 cut(s) 549, 696, 738, 1064, 1255
RseI CAYNNNNRTG 4 cut(s) 796, 1044, 1089, 1227
SacI GAGCTC 1 cut(s) 1082
SaqAI TTAA 9 cut(s) 123, 228, 273, 284, 468, 477, 626, 690, 1206
SatI GCNGC 3 cut(s) 670, 1005, 1122
Sau3AI GATC 2 cut(s) 87, 91
Sau96I GGNCC 3 cut(s) 136, 659, 677
SchI GAGTC 1 cut(s) 1092
ScrFI CCNGG 6 cut(s) 140, 297, 298, 372, 525, 681
SduI GDGCHC 2 cut(s) 793, 1082
SexAI ACCWGGT 1 cut(s) 679
SfaNI GCATC 2 cut(s) 727, 991
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 3 cut(s) 136, 659, 677
SmaI CCCGGG 1 cut(s) 298
SmiMI CAYNNNNRTG 4 cut(s) 796, 1044, 1089, 1227
SmlI CTYRAG 2 cut(s) 122, 725
SmoI CTYRAG 2 cut(s) 122, 725
SnaBI TACGTA 1 cut(s) 207
SpeI ACTAGT 1 cut(s) 191
SseBI AGGCCT 1 cut(s) 465
SsiI CCGC 6 cut(s) 588, 669, 706, 1005, 1124, 1227
SspI AATATT 1 cut(s) 412
SspMI CTAG 4 cut(s) 192, 1026, 1104, 1258
SstI GAGCTC 1 cut(s) 1082
StuI AGGCCT 1 cut(s) 465
StyD4I CCNGG 6 cut(s) 138, 295, 296, 370, 523, 679
TaaI ACNGT 5 cut(s) 268, 401, 548, 695, 842
TaiI ACGT 4 cut(s) 209, 435, 606, 1023
TaqI TCGA 3 cut(s) 90, 438, 721
TaqII GACCGA 1 cut(s) 1178
TatI WGTACW 2 cut(s) 548, 1254
TauI GCSGC 2 cut(s) 672, 1007
TfiI GAWTC 1 cut(s) 960
Tru1I TTAA 9 cut(s) 123, 228, 273, 284, 468, 477, 626, 690, 1206
Tru9I TTAA 9 cut(s) 123, 228, 273, 284, 468, 477, 626, 690, 1206
TscAI CASTG 1 cut(s) 564
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 1 cut(s) 1121
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 6 cut(s) 17, 116, 728, 846, 1143, 1185
TspGWI ACGGA 2 cut(s) 152, 755
TspMI CCCGGG 1 cut(s) 296
TspRI CASTG 1 cut(s) 564
Tth111I GACNNNGTC 1 cut(s) 176
Vha464I CTTAAG 1 cut(s) 122
VneI GTGCAC 1 cut(s) 789
VpaK11BI GGWCC 3 cut(s) 136, 659, 677
VspI ATTAAT 1 cut(s) 626
XagI CCTNNNNNAGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 328
XmaI CCCGGG 1 cut(s) 296
XspI CTAG 4 cut(s) 192, 1026, 1104, 1258
Zsp2I ATGCAT 1 cut(s) 894
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.