Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Reverse (-)

9508440 .. 9514086

Gene Structure 5647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1130300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2013 bp

ATGGGTGAACTGAACAATTCCGCGGCTCATCGCAGGGTTAGCCCCCGGCTGCAGAACGTTCCGGCGGAGAAGCGGCCATTTTACGGGAGTCCGAAACGGACGGCAGATGAGTCCGAGAACGACGTTGTCAGGACCAAGAGGACCAAGGTTGCGAAACCCCCTAAACCGCCGGCACAGAGTTCTAAGCCCGAAGCCGAACCGAGCAAGGGAAAAGTGATACTGGAGAGCGGCGAGGGCAAGGATTGTGTGGATTGGAGTTGGTATACCGGTGCTGATTTGCCTTTGACCGATGCGAACGGAGTGAGCTACACTGCTCGTGTGAGGGAGACACTCCGAGTTTTCAATTTGCATTACCTTCACTATGTTCAGGAAGAGGAGAAAAGATGCCGTGGGCCTGAGAATGGGAGTCCTGTGAAGAGTCCTTCCAAAAAACCTCCCAAGGGGCCTTCGTTGAGTCCTTCCAAGGGATATGATAAGAAGAAAGATGATGAACCTAAGAAGCAGTCCAAGAGACCTGATCTGAAGGCACTTTCTGAGATGCTGAAGAAGAACCAAATTTTATTCCCTGAAAAGAAAATTGGTCATCTTCCGGGTATTGCTGTTGGGCATCAATTTTACTCTCGGGCTGAAATGGTGGCTATAGGATTCCATTCACACTGGTTGAGTGGAATTGATTGTGTAGGAGAATCTAAAGGCAAGGAGAAATTCAGAGGCTATGAACTTCCGTTTGCCTTAACAGTTGTGGTTTCTGGCCAATATGAAGATGATATTGATAACTCAGACGAGGTTGTTTATACTGGTCAAGGTGGAAATGATTTGCTTGGTAATAAACAGCAAATTGCAGATCAAGTTATGAAACGGGGTAATTTGGCTCTTAAGAATAATATGGAGCAGGGCATTCCTGTTAGAGTCGTCCGTGGACATGACTGTGTCAATAGTTATACTAATAAAGTTTATACGTATGATGGACTATACAAGGTTAACAATTATTGGGCAGATAAGGGTGTTGCGGGATTTACGGTGTTTAAGTATCGTTTAAAGCGACTTCCAGGGCAAGATAATTTGTGCAGTAAACAGGTAAATTTTGTTCGTGCGCGAGGGTCTAAAGTTCAAGCAGAATTACCTGGGTTGGTATGCAAGGACATCAGTAATGGTCAAGAAAATATTTGCATTCCAGCTACCAATGTCATCGATAAACCTCCTGTAGCGCCTGAAGGCCTTACATATACTAGCTCTATTATAGTTGAAAGGGATGTGAACATTCCAACGAATGCTCCTGGGTGCAGCTGCAAAGGAAACTGTACTAATCCACTGACTTGCTCTTGTGCTCGACTGAATGGCGATGATTTTCCTTACGTTAGTAAAGATGGTGGAAGATTAATTGAGGCAAAGGCTGTTGTGTTTGAGTGTGGTCCAAATTGCGGCTGTGGACCGGGTTGTGTTAACCGTACATCTCAGCGGGGAATAAAGCATCGACTTGAGGTATTTCGTACAGATTACAAAGGCTGGGGTGTTAGGTCGTGGGACTTTATTCCTTCTGGTGCACCGGTATGTGAATACACCGGAGTTCTTAGGAAGACAGATGAAGTTGACGGTCTCTTGGGGAACGAATATATATTTGAAATTGATTGCTGGCATACAATGCATGGTATTGGGTCAAGAGAGAAGCGTATGTGCGATGTCACTATTCCAAATGGTGACGCGGAGTCAGGATTCAGCAATCTATCAGAAAGTGAGCCTGAGTTTTGCATAGATGCTGGTTCTCATGGCAACGTTGCTAGATACATCAATCATAGTTGCGAGCCTAACCTCTTCGTACAGTGCGTTTTGAGCTCTCATCGTGATGTTAGACTCGCTAAAATTGTGTTGTTCGCTGCAGATAACATACCTCCCTTGCAGGAACTTACATACGACTATGGTTATGAGCTTGACAGCGTTGTCGGTCTTGATGGAAAAATTAAGCAGCTAGCTTGTCACTGCGGTGCAGTTGGCTGTCGGAAGCGTTTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

671

Amino Acids

74.08

Weight (kDa)

8.48

Isoelectric Point (pI)

39.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	193 - 352	1.3e-50	SAD/SRA domain
Pre-SET	PF05033	383 - 483	2.2e-16	Pre-SET motif
SET	PF00856	502 - 640	1.4e-18	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1937
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	1 cut(s)	263
AccII	CGCG	3 cut(s)	23, 1096, 1703
AclI	AACGTT	2 cut(s)	57, 1773
AcoI	YGGCCR	2 cut(s)	74, 751
AcsI	RAATTY	3 cut(s)	555, 704, 1081
AcuI	CTGAAG	3 cut(s)	542, 563, 1233
AfaI	GTAC	5 cut(s)	1303, 1450, 1492, 1818, 2009
AfiI	CCNNNNNNNGG	6 cut(s)	83, 206, 401, 440, 464, 1421
AflII	CTTAAG	1 cut(s)	875
AgeI	ACCGGT	2 cut(s)	266, 1546
AgsI	TTSAA	4 cut(s)	343, 1112, 1247, 1622
AhdI	GACNNNNNGTC	1 cut(s)	1705
AjnI	CCWGG	3 cut(s)	1048, 1123, 1276
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
AleI	CACNNNNGTG	1 cut(s)	1980
AluBI	AGCT	8 cut(s)	306, 1178, 1233, 1287, 1833, 1927, 1966, 1970
AluI	AGCT	8 cut(s)	306, 1178, 1233, 1287, 1833, 1927, 1966, 1970
Alw21I	GWGCWC	3 cut(s)	1330, 1546, 1835
Alw26I	GTCTC	3 cut(s)	320, 505, 1601
Alw44I	GTGCAC	1 cut(s)	1542
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	5 cut(s)	74, 392, 443, 751, 1216
ApaLI	GTGCAC	1 cut(s)	1542
ApeKI	GCWGC	5 cut(s)	49, 1284, 1287, 1874, 1963
ApoI	RAATTY	3 cut(s)	555, 704, 1081
AseI	ATTAAT	1 cut(s)	1379
AsiGI	ACCGGT	2 cut(s)	266, 1546
AspLEI	GCGC	2 cut(s)	1096, 1210
AspS9I	GGNCC	6 cut(s)	132, 141, 392, 443, 1412, 1430
AsuC2I	CCSGG	3 cut(s)	46, 591, 1434
AsuHPI	GGTGA	2 cut(s)	17, 1709
AsuNHI	GCTAGC	1 cut(s)	1966
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	4 cut(s)	132, 141, 1412, 1430
BaeGI	GKGCMC	1 cut(s)	1546
BalI	TGGCCA	1 cut(s)	753
BanII	GRGCYC	1 cut(s)	1835
BarI	GAAGNNNNNNTAC	1 cut(s)	1991
BauI	CACGAG	1 cut(s)	315
BbsI	GAAGAC	1 cut(s)	1583
Bbv12I	GWGCWC	3 cut(s)	1330, 1546, 1835
BbvI	GCAGC	5 cut(s)	36, 1274, 1296, 1861, 1975
BccI	CCATC	3 cut(s)	959, 1361, 1943
BceAI	ACGGC	2 cut(s)	117, 372
BciT130I	CCWGG	3 cut(s)	1050, 1125, 1278
BcnI	CCSGG	3 cut(s)	46, 591, 1434
BcoDI	GTCTC	3 cut(s)	320, 505, 1601
BfaI	CTAG	4 cut(s)	1230, 1779, 1967, 2011
BfmI	CTRYAG	4 cut(s)	50, 639, 1203, 1875
BfoI	RGCGCY	1 cut(s)	1211
BfrI	CTTAAG	1 cut(s)	875
BisI	GCNGC	9 cut(s)	24, 50, 74, 229, 1285, 1288, 1423, 1875, 1964
BlsI	GCNGC	9 cut(s)	25, 51, 75, 230, 1286, 1289, 1424, 1876, 1965
Bme1390I	CCNGG	6 cut(s)	46, 591, 1050, 1125, 1278, 1434
Bme18I	GGWCC	4 cut(s)	132, 141, 1412, 1430
BmeRI	GACNNNNNGTC	1 cut(s)	1705
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	6 cut(s)	132, 141, 392, 443, 1412, 1430
BmiI	GGNNCC	1 cut(s)	444
BmrFI	CCNGG	6 cut(s)	46, 591, 1050, 1125, 1278, 1434
BmsI	GCATC	6 cut(s)	280, 374, 528, 616, 1480, 1744
BmtI	GCTAGC	1 cut(s)	1970
BpiI	GAAGAC	1 cut(s)	1583
BpmI	CTGGAG	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	1499
BpuMI	CCSGG	3 cut(s)	46, 591, 1434
Bsa29I	ATCGAT	1 cut(s)	1191
BsaAI	YACGTR	1 cut(s)	960
BsaI	GGTCTC	2 cut(s)	505, 1601
BsaWI	WCCGGW	3 cut(s)	266, 1546, 1562
BsaXI	ACNNNNNCTCC	2 cut(s)	1258, 1288
Bsc4I	CCNNNNNNNGG	6 cut(s)	83, 206, 401, 440, 464, 1421
Bse118I	RCCGGY	3 cut(s)	169, 266, 1546
Bse1I	ACTGG	3 cut(s)	225, 662, 802
BseBI	CCWGG	3 cut(s)	1050, 1125, 1278
BseCI	ATCGAT	1 cut(s)	1191
BseGI	GGATG	1 cut(s)	1258
BseLI	CCNNNNNNNGG	6 cut(s)	83, 206, 401, 440, 464, 1421
BseMII	CTCAG	5 cut(s)	387, 525, 792, 1469, 1731
BseNI	ACTGG	3 cut(s)	225, 662, 802
BseRI	GAGGAG	1 cut(s)	389
BseSI	GKGCMC	1 cut(s)	1546
BseXI	GCAGC	5 cut(s)	36, 1274, 1296, 1861, 1975
BseYI	CCCAGC	1 cut(s)	1506
BsgI	GTGCAG	3 cut(s)	1087, 1303, 2004
Bsh1236I	CGCG	3 cut(s)	23, 1096, 1703
BshFI	GGCC	5 cut(s)	76, 394, 445, 753, 1218
BshTI	ACCGGT	2 cut(s)	266, 1546
BshVI	ATCGAT	1 cut(s)	1191
BsiHKAI	GWGCWC	3 cut(s)	1330, 1546, 1835
BsiHKCI	CYCGRG	1 cut(s)	621
BsiSI	CCGG	8 cut(s)	46, 62, 170, 267, 590, 1433, 1547, 1563
BslFI	GGGAC	1 cut(s)	1538
BslI	CCNNNNNNNGG	6 cut(s)	83, 206, 401, 440, 464, 1421
BsmAI	GTCTC	3 cut(s)	320, 505, 1601
BsmFI	GGGAC	1 cut(s)	1538
BsmI	GAATGC	3 cut(s)	897, 1170, 1276
BsnI	GGCC	5 cut(s)	76, 394, 445, 753, 1218
Bso31I	GGTCTC	2 cut(s)	505, 1601
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	1330, 1546, 1835
Bsp143I	GATC	2 cut(s)	517, 844
BspANI	GGCC	5 cut(s)	76, 394, 445, 753, 1218
BspCNI	CTCAG	5 cut(s)	388, 526, 791, 1468, 1732
BspDI	ATCGAT	1 cut(s)	1191
BspFNI	CGCG	3 cut(s)	23, 1096, 1703
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	2 cut(s)	54, 1879
BspOI	GCTAGC	1 cut(s)	1970
BspTI	CTTAAG	1 cut(s)	875
BspTNI	GGTCTC	2 cut(s)	505, 1601
BsrBI	CCGCTC	1 cut(s)	228
BsrFI	RCCGGY	3 cut(s)	169, 266, 1546
BsrI	ACTGG	3 cut(s)	225, 662, 802
BssAI	RCCGGY	3 cut(s)	169, 266, 1546
BssMI	GATC	2 cut(s)	517, 844
BssNAI	GTATAC	1 cut(s)	264
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	3 cut(s)	144, 438, 462
Bst1107I	GTATAC	1 cut(s)	264
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	3 cut(s)	1050, 1125, 1278
Bst4CI	ACNGT	7 cut(s)	739, 929, 1021, 1301, 1448, 1595, 1821
Bst6I	CTCTTC	3 cut(s)	366, 410, 1817
BstAFI	CTTAAG	1 cut(s)	875
BstAPI	GCANNNNNTGC	1 cut(s)	1642
BstBAI	YACGTR	1 cut(s)	960
BstC8I	GCNNGC	4 cut(s)	171, 1634, 1802, 1968
BstDEI	CTNAG	8 cut(s)	183, 396, 495, 534, 778, 1455, 1571, 1740
BstDSI	CCRYGG	3 cut(s)	21, 388, 916
BstF5I	GGATG	1 cut(s)	1258
BstFNI	CGCG	3 cut(s)	23, 1096, 1703
BstH2I	RGCGCY	1 cut(s)	1211
BstHHI	GCGC	2 cut(s)	1096, 1210
BstKTI	GATC	2 cut(s)	520, 847
BstMAI	GTCTC	3 cut(s)	320, 505, 1601
BstMBI	GATC	2 cut(s)	517, 844
BstMWI	GCNNNNNNNGC	4 cut(s)	39, 234, 1642, 1830
BstNI	CCWGG	3 cut(s)	1050, 1125, 1278
BstSCI	CCNGG	6 cut(s)	44, 589, 1048, 1123, 1276, 1432
BstSFI	CTRYAG	4 cut(s)	50, 639, 1203, 1875
BstSLI	GKGCMC	1 cut(s)	1546
BstSNI	TACGTA	1 cut(s)	960
BstUI	CGCG	3 cut(s)	23, 1096, 1703
BstV1I	GCAGC	5 cut(s)	36, 1274, 1296, 1861, 1975
BstV2I	GAAGAC	1 cut(s)	1583
BstZ17I	GTATAC	1 cut(s)	264
Bsu15I	ATCGAT	1 cut(s)	1191
BsuRI	GGCC	5 cut(s)	76, 394, 445, 753, 1218
BsuTUI	ATCGAT	1 cut(s)	1191
BtgI	CCRYGG	3 cut(s)	21, 388, 916
BtgZI	GCGATG	3 cut(s)	14, 1356, 1692
BtsCI	GGATG	1 cut(s)	1258
BtsI	GCAGTG	2 cut(s)	309, 1975
BtsIMutI	CAGTG	5 cut(s)	309, 655, 1310, 1826, 1975
Cac8I	GCNNGC	4 cut(s)	171, 1634, 1802, 1968
CfoI	GCGC	2 cut(s)	1096, 1210
Cfr10I	RCCGGY	3 cut(s)	169, 266, 1546
Cfr13I	GGNCC	6 cut(s)	132, 141, 392, 443, 1412, 1430
Cfr42I	CCGCGG	1 cut(s)	24
ClaI	ATCGAT	1 cut(s)	1191
CseI	GACGC	1 cut(s)	1709
Csp6I	GTAC	5 cut(s)	1302, 1449, 1491, 1817, 2008
CspAI	ACCGGT	2 cut(s)	266, 1546
CviAII	CATG	3 cut(s)	923, 1646, 1766
CviQI	GTAC	5 cut(s)	1302, 1449, 1491, 1817, 2008
DdeI	CTNAG	8 cut(s)	183, 396, 495, 534, 778, 1455, 1571, 1740
DpnI	GATC	2 cut(s)	519, 846
DpnII	GATC	2 cut(s)	517, 844
DraI	TTTAAA	1 cut(s)	1038
DrdI	GACNNNNNNGTC	1 cut(s)	1937
DriI	GACNNNNNGTC	1 cut(s)	1705
DseDI	GACNNNNNNGTC	1 cut(s)	1937
EaeI	YGGCCR	2 cut(s)	74, 751
Eam1104I	CTCTTC	3 cut(s)	366, 410, 1817
Eam1105I	GACNNNNNGTC	1 cut(s)	1705
EarI	CTCTTC	3 cut(s)	366, 410, 1817
EciI	GGCGGA	1 cut(s)	80
Ecl136II	GAGCTC	1 cut(s)	1833
Eco105I	TACGTA	1 cut(s)	960
Eco130I	CCWWGG	3 cut(s)	144, 438, 462
Eco147I	AGGCCT	1 cut(s)	1218
Eco24I	GRGCYC	1 cut(s)	1835
Eco31I	GGTCTC	2 cut(s)	505, 1601
Eco47I	GGWCC	4 cut(s)	132, 141, 1412, 1430
Eco53kI	GAGCTC	1 cut(s)	1833
Eco57I	CTGAAG	3 cut(s)	542, 563, 1233
Eco88I	CYCGRG	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	1833
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRII	CCWGG	3 cut(s)	1048, 1123, 1276
EcoT14I	CCWWGG	3 cut(s)	144, 438, 462
EcoT22I	ATGCAT	1 cut(s)	1647
EcoT38I	GRGCYC	1 cut(s)	1835
ErhI	CCWWGG	3 cut(s)	144, 438, 462
FaeI	CATG	3 cut(s)	926, 1649, 1769
FaqI	GGGAC	1 cut(s)	1538
FatI	CATG	3 cut(s)	922, 1645, 1765
FauI	CCCGC	2 cut(s)	1003, 1452
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	9 cut(s)	24, 50, 74, 229, 1285, 1288, 1423, 1875, 1964
FokI	GGATG	1 cut(s)	1265
FriOI	GRGCYC	1 cut(s)	1835
Fsp4HI	GCNGC	9 cut(s)	24, 50, 74, 229, 1285, 1288, 1423, 1875, 1964
FspBI	CTAG	4 cut(s)	1230, 1779, 1967, 2011
GlaI	GCGC	2 cut(s)	1095, 1209
GluI	GCNGC	9 cut(s)	24, 50, 74, 229, 1285, 1288, 1423, 1875, 1964
GsaI	CCCAGC	1 cut(s)	1510
GsuI	CTGGAG	1 cut(s)	242
HaeII	RGCGCY	1 cut(s)	1211
HaeIII	GGCC	5 cut(s)	76, 394, 445, 753, 1218
HapII	CCGG	8 cut(s)	46, 62, 170, 267, 590, 1433, 1547, 1563
HgaI	GACGC	1 cut(s)	1709
HhaI	GCGC	2 cut(s)	1096, 1210
Hin1II	CATG	3 cut(s)	926, 1649, 1769
Hin6I	GCGC	2 cut(s)	1094, 1208
HinP1I	GCGC	2 cut(s)	1094, 1208
HincII	GTYRAC	3 cut(s)	982, 1444, 1591
HindII	GTYRAC	3 cut(s)	982, 1444, 1591
HpaI	GTTAAC	2 cut(s)	982, 1444
HpaII	CCGG	8 cut(s)	46, 62, 170, 267, 590, 1433, 1547, 1563
HphI	GGTGA	2 cut(s)	17, 1709
Hpy188I	TCNGA	9 cut(s)	93, 115, 335, 522, 535, 710, 781, 1729, 1998
Hpy188III	TCNNGA	7 cut(s)	130, 368, 1157, 1659, 1710, 1841, 1946
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	7 cut(s)	365, 432, 456, 468, 517, 1208, 1545
HpyCH4III	ACNGT	7 cut(s)	739, 929, 1021, 1301, 1448, 1595, 1821
HpyCH4IV	ACGT	5 cut(s)	57, 123, 959, 1356, 1773
HpyF10VI	GCNNNNNNNGC	4 cut(s)	39, 234, 1642, 1830
HpyF3I	CTNAG	8 cut(s)	183, 396, 495, 534, 778, 1455, 1571, 1740
HpySE526I	ACGT	5 cut(s)	57, 123, 959, 1356, 1773
Hsp92II	CATG	3 cut(s)	926, 1649, 1769
HspAI	GCGC	2 cut(s)	1094, 1208
KroI	GCCGGC	1 cut(s)	169
KroNI	GCCGGC	1 cut(s)	171
KspAI	GTTAAC	2 cut(s)	982, 1444
KspI	CCGCGG	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	517, 844
LmnI	GCTCC	2 cut(s)	889, 1279
Lsp1109I	GCAGC	5 cut(s)	36, 1274, 1296, 1861, 1975
LweI	GCATC	6 cut(s)	280, 374, 528, 616, 1480, 1744
MaeI	CTAG	4 cut(s)	1230, 1779, 1967, 2011
MaeII	ACGT	5 cut(s)	57, 123, 959, 1356, 1773
MaeIII	GTNAC	3 cut(s)	1681, 1697, 1973
MalI	GATC	2 cut(s)	519, 846
MbiI	CCGCTC	1 cut(s)	228
MboI	GATC	2 cut(s)	517, 844
MhlI	GDGCHC	3 cut(s)	1330, 1546, 1835
MlsI	TGGCCA	1 cut(s)	753
MluNI	TGGCCA	1 cut(s)	753
MlyI	GAGTC	8 cut(s)	97, 119, 415, 427, 463, 918, 1715, 1845
MmeI	TCCRAC	2 cut(s)	1289, 1976
Mox20I	TGGCCA	1 cut(s)	753
Mph1103I	ATGCAT	1 cut(s)	1647
MroNI	GCCGGC	1 cut(s)	169
MscI	TGGCCA	1 cut(s)	753
MseI	TTAA	8 cut(s)	734, 876, 981, 1026, 1037, 1379, 1443, 1959
MslI	CAYNNNNRTG	4 cut(s)	927, 1549, 1842, 1980
Msp20I	TGGCCA	1 cut(s)	753
MspA1I	CMGCKG	3 cut(s)	23, 1287, 1459
MspCI	CTTAAG	1 cut(s)	875
MspI	CCGG	8 cut(s)	46, 62, 170, 267, 590, 1433, 1547, 1563
MspR9I	CCNGG	6 cut(s)	46, 591, 1050, 1125, 1278, 1434
Mva1269I	GAATGC	3 cut(s)	897, 1170, 1276
MvaI	CCWGG	3 cut(s)	1050, 1125, 1278
MvnI	CGCG	3 cut(s)	23, 1096, 1703
MwoI	GCNNNNNNNGC	4 cut(s)	39, 234, 1642, 1830
NaeI	GCCGGC	1 cut(s)	171
NciI	CCSGG	3 cut(s)	46, 591, 1434
NdeII	GATC	2 cut(s)	517, 844
NgoMIV	GCCGGC	1 cut(s)	169
NheI	GCTAGC	1 cut(s)	1966
NlaIII	CATG	3 cut(s)	926, 1649, 1769
NlaIV	GGNNCC	1 cut(s)	444
NmuCI	GTSAC	3 cut(s)	1681, 1697, 1973
NsiI	ATGCAT	1 cut(s)	1647
OliI	CACNNNNGTG	1 cut(s)	1980
PceI	AGGCCT	1 cut(s)	1218
PcsI	WCGNNNNNNNCGW	2 cut(s)	1039, 1821
PctI	GAATGC	3 cut(s)	897, 1170, 1276
PdiI	GCCGGC	1 cut(s)	171
PfeI	GAWTC	3 cut(s)	645, 686, 1713
PflFI	GACNNNGTC	2 cut(s)	125, 929
PinAI	ACCGGT	2 cut(s)	266, 1546
PkrI	GCNGC	9 cut(s)	25, 51, 75, 230, 1286, 1289, 1424, 1876, 1965
PleI	GAGTC	8 cut(s)	96, 118, 414, 426, 462, 917, 1714, 1845
PpsI	GAGTC	8 cut(s)	96, 118, 414, 426, 462, 917, 1714, 1845
Ppu21I	YACGTR	1 cut(s)	960
PshBI	ATTAAT	1 cut(s)	1379
Psp124BI	GAGCTC	1 cut(s)	1835
Psp1406I	AACGTT	2 cut(s)	57, 1773
Psp6I	CCWGG	3 cut(s)	1048, 1123, 1276
PspFI	CCCAGC	1 cut(s)	1506
PspGI	CCWGG	3 cut(s)	1048, 1123, 1276
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	6 cut(s)	132, 141, 392, 443, 1412, 1430
PsrI	GAACNNNNNNTAC	2 cut(s)	1071, 1103
PstI	CTGCAG	2 cut(s)	54, 1879
PsyI	GACNNNGTC	2 cut(s)	125, 929
PvuII	CAGCTG	1 cut(s)	1287
RsaI	GTAC	5 cut(s)	1303, 1450, 1492, 1818, 2009
RsaNI	GTAC	5 cut(s)	1302, 1449, 1491, 1817, 2008
RseI	CAYNNNNRTG	4 cut(s)	927, 1549, 1842, 1980
SacI	GAGCTC	1 cut(s)	1835
SacII	CCGCGG	1 cut(s)	24
SaqAI	TTAA	8 cut(s)	734, 876, 981, 1026, 1037, 1379, 1443, 1959
SatI	GCNGC	9 cut(s)	24, 50, 74, 229, 1285, 1288, 1423, 1875, 1964
Sau3AI	GATC	2 cut(s)	517, 844
Sau96I	GGNCC	6 cut(s)	132, 141, 392, 443, 1412, 1430
SchI	GAGTC	8 cut(s)	97, 119, 415, 427, 463, 918, 1715, 1845
ScrFI	CCNGG	6 cut(s)	46, 591, 1050, 1125, 1278, 1434
SduI	GDGCHC	3 cut(s)	1330, 1546, 1835
SfaNI	GCATC	6 cut(s)	280, 374, 528, 616, 1480, 1744
SfcI	CTRYAG	4 cut(s)	50, 639, 1203, 1875
Sfr303I	CCGCGG	1 cut(s)	24
SgrBI	CCGCGG	1 cut(s)	24
SinI	GGWCC	4 cut(s)	132, 141, 1412, 1430
SmiMI	CAYNNNNRTG	4 cut(s)	927, 1549, 1842, 1980
SmlI	CTYRAG	2 cut(s)	875, 1478
SmoI	CTYRAG	2 cut(s)	875, 1478
SnaBI	TACGTA	1 cut(s)	960
SseBI	AGGCCT	1 cut(s)	1218
SspI	AATATT	1 cut(s)	1165
SspMI	CTAG	4 cut(s)	1230, 1779, 1967, 2011
SstI	GAGCTC	1 cut(s)	1835
StuI	AGGCCT	1 cut(s)	1218
StyD4I	CCNGG	6 cut(s)	44, 589, 1048, 1123, 1276, 1432
StyI	CCWWGG	3 cut(s)	144, 438, 462
TaaI	ACNGT	7 cut(s)	739, 929, 1021, 1301, 1448, 1595, 1821
TaiI	ACGT	5 cut(s)	60, 126, 962, 1359, 1776
TaqI	TCGA	3 cut(s)	1191, 1330, 1474
TaqII	GACCGA	2 cut(s)	302, 1931
TatI	WGTACW	2 cut(s)	1301, 2007
TauI	GCSGC	4 cut(s)	26, 76, 231, 1425
TfiI	GAWTC	3 cut(s)	645, 686, 1713
Tru1I	TTAA	8 cut(s)	734, 876, 981, 1026, 1037, 1379, 1443, 1959
Tru9I	TTAA	8 cut(s)	734, 876, 981, 1026, 1037, 1379, 1443, 1959
TscAI	CASTG	5 cut(s)	316, 662, 1317, 1826, 1982
TseFI	GTSAC	3 cut(s)	1681, 1697, 1973
TseI	GCWGC	5 cut(s)	49, 1284, 1287, 1874, 1963
Tsp45I	GTSAC	3 cut(s)	1681, 1697, 1973
TspDTI	ATGAA	5 cut(s)	504, 732, 774, 869, 1599
TspGWI	ACGGA	4 cut(s)	112, 312, 714, 905
TspRI	CASTG	5 cut(s)	316, 662, 1317, 1826, 1982
Tth111I	GACNNNGTC	2 cut(s)	125, 929
Vha464I	CTTAAG	1 cut(s)	875
VneI	GTGCAC	1 cut(s)	1542
VpaK11BI	GGWCC	4 cut(s)	132, 141, 1412, 1430
VspI	ATTAAT	1 cut(s)	1379
XapI	RAATTY	3 cut(s)	555, 704, 1081
XmiI	GTMKAC	1 cut(s)	263
XspI	CTAG	4 cut(s)	1230, 1779, 1967, 2011
Zsp2I	ATGCAT	1 cut(s)	1647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.