Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011904.1

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

19337 .. 26689

Gene Structure 7353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011904.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atgagccacgctcatgctaccgccagcgatactaacaaccaccaagggtgcggcctacggaaacacagcaatacaagctatcagcggagccccagctcaccctcagatcaccgctcgcacgccaagattacttcgctgaaccatcaaaagctgggaactgaagcatgtcagtcccacatcgaaaacaaagaagaggttagcctcttcttcacctataaaatgtccactcctctctccacattaattacattaattgaagccaaggatgtagtgtttgaatgtgggccaaaatgtggttgtggaccttcttgtgtcaaccgtacttctcagagggggctcaagtaccgatttgaggttttccgaacgcccatgaaagggtgggcagttagatcttgggattttatacctgctggggcaccagtttgtgagtatgtaggaatacttcgcaggacagaagatgtggatagtgcctcggagaattattacatttttgacattgattgcttgcaaacaatgaaggggcttgatgggagggagaggcgatcacaagctgtatgcataccaacagttaattcactggagaggcctgatgatcagagatcggataatgtgccagagtactgcattgatgctggttctaatggaaatattgccagatttataaaccacagttgtgagcctaatctgtttgttcagtgtgtcttgagttcacaccatgacatcaaactagctcgagtaatgctgtttgcagcagacaacatacctcctttgcaggagctgacatatgactacggttacgcccttgatagtgtcttgggccctgatgggaaggtaaagaagatgttttgccactgtggtgcagcaggttgcaggaaacgcttgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

295

Amino Acids

32.95

Weight (kDa)

7.53

Isoelectric Point (pI)

58.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
Acc36I	ACCTGC	2 cut(s)	415, 854
AccB1I	GGYRCC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	114
AciI	CCGC	4 cut(s)	21, 51, 85, 112
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	3 cut(s)	322, 344, 620
AfiI	CCNNNNNNNGG	4 cut(s)	293, 352, 374, 375
AgsI	TTSAA	2 cut(s)	257, 278
AjuI	GAANNNNNNNTTGG	2 cut(s)	556, 588
AleI	CACNNNNGTG	2 cut(s)	672, 855
AluBI	AGCT	6 cut(s)	78, 96, 151, 551, 731, 778
AluI	AGCT	6 cut(s)	78, 96, 151, 551, 731, 778
AlwNI	CAGNNNCTG	1 cut(s)	778
Ama87I	CYCGRG	1 cut(s)	732
AoxI	GGCC	4 cut(s)	52, 284, 584, 817
ApaI	GGGCCC	1 cut(s)	821
ApeKI	GCWGC	2 cut(s)	749, 860
AseI	ATTAAT	2 cut(s)	242, 251
AspS9I	GGNCC	4 cut(s)	284, 302, 817, 818
AsuHPI	GGTGA	3 cut(s)	90, 101, 202
AvaI	CYCGRG	1 cut(s)	732
AvaII	GGWCC	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	418, 821
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	3 cut(s)	92, 339, 821
BarI	GAAGNNNNNNTAC	2 cut(s)	426, 458
BbvI	GCAGC	2 cut(s)	761, 872
BccI	CCATC	3 cut(s)	150, 521, 818
BclI	TGATCA	1 cut(s)	592
BfaI	CTAG	2 cut(s)	728, 886
BfuAI	ACCTGC	2 cut(s)	415, 854
BglII	AGATCT	1 cut(s)	389
BisI	GCNGC	3 cut(s)	52, 750, 861
BlsI	GCNGC	3 cut(s)	53, 751, 862
BmcAI	AGTACT	1 cut(s)	620
Bme18I	GGWCC	1 cut(s)	302
BmeT110I	CYCGRG	1 cut(s)	732
BmgT120I	GGNCC	4 cut(s)	284, 302, 817, 818
BmiI	GGNNCC	3 cut(s)	89, 417, 819
BmsI	GCATC	1 cut(s)	619
BplI	GAGNNNNNCTC	1 cut(s)	27
BpmI	CTGGAG	1 cut(s)	599
BpuEI	CTTGAG	2 cut(s)	323, 724
BsaJI	CCNNGG	3 cut(s)	43, 261, 471
Bsc4I	CCNNNNNNNGG	4 cut(s)	293, 352, 374, 375
Bse1I	ACTGG	2 cut(s)	419, 582
BseDI	CCNNGG	3 cut(s)	43, 261, 471
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	4 cut(s)	293, 352, 374, 375
BseMII	CTCAG	2 cut(s)	117, 341
BseNI	ACTGG	2 cut(s)	419, 582
BseRI	GAGGAG	1 cut(s)	219
BseSI	GKGCMC	2 cut(s)	418, 821
BseXI	GCAGC	2 cut(s)	761, 872
BseYI	CCCAGC	3 cut(s)	92, 151, 410
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	4 cut(s)	54, 286, 586, 819
BshNI	GGYRCC	1 cut(s)	415
BsiHKCI	CYCGRG	1 cut(s)	732
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	4 cut(s)	293, 352, 374, 375
BsmFI	GGGAC	1 cut(s)	157
BsnI	GGCC	4 cut(s)	54, 286, 586, 819
BsoBI	CYCGRG	1 cut(s)	732
Bsp120I	GGGCCC	1 cut(s)	817
Bsp1286I	GDGCHC	4 cut(s)	92, 339, 418, 821
Bsp143I	GATC	5 cut(s)	106, 389, 542, 592, 599
BspACI	CCGC	4 cut(s)	21, 51, 85, 112
BspANI	GGCC	4 cut(s)	54, 286, 586, 819
BspCNI	CTCAG	2 cut(s)	116, 340
BspLI	GGNNCC	3 cut(s)	89, 417, 819
BspMI	ACCTGC	2 cut(s)	415, 854
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	114
BsrI	ACTGG	2 cut(s)	419, 582
BssECI	CCNNGG	3 cut(s)	43, 261, 471
BssMI	GATC	5 cut(s)	106, 389, 542, 592, 599
BssT1I	CCWWGG	2 cut(s)	43, 261
Bst4CI	ACNGT	5 cut(s)	320, 568, 671, 794, 854
Bst6I	CTCTTC	2 cut(s)	186, 209
BstC8I	GCNNGC	4 cut(s)	25, 116, 120, 506
BstDEI	CTNAG	2 cut(s)	103, 327
BstF5I	GGATG	1 cut(s)	271
BstKTI	GATC	5 cut(s)	109, 392, 545, 595, 602
BstMBI	GATC	5 cut(s)	106, 389, 542, 592, 599
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 876
BstNSI	RCATGY	1 cut(s)	168
BstSLI	GKGCMC	2 cut(s)	418, 821
BstV1I	GCAGC	2 cut(s)	761, 872
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	4 cut(s)	54, 286, 586, 819
BtsCI	GGATG	1 cut(s)	271
BtsIMutI	CAGTG	3 cut(s)	575, 701, 850
BveI	ACCTGC	2 cut(s)	415, 854
Cac8I	GCNNGC	4 cut(s)	25, 116, 120, 506
CaiI	CAGNNNCTG	1 cut(s)	778
Cfr13I	GGNCC	4 cut(s)	284, 302, 817, 818
Csp6I	GTAC	3 cut(s)	321, 343, 619
CviAII	CATG	4 cut(s)	14, 165, 370, 716
CviQI	GTAC	3 cut(s)	321, 343, 619
DdeI	CTNAG	2 cut(s)	103, 327
DpnI	GATC	5 cut(s)	108, 391, 544, 594, 601
DpnII	GATC	5 cut(s)	106, 389, 542, 592, 599
Eam1104I	CTCTTC	2 cut(s)	186, 209
EarI	CTCTTC	2 cut(s)	186, 209
Eco130I	CCWWGG	2 cut(s)	43, 261
Eco147I	AGGCCT	1 cut(s)	586
Eco24I	GRGCYC	3 cut(s)	92, 339, 821
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	732
EcoO109I	RGGNCCY	1 cut(s)	818
EcoT14I	CCWWGG	2 cut(s)	43, 261
EcoT22I	ATGCAT	1 cut(s)	560
EcoT38I	GRGCYC	3 cut(s)	92, 339, 821
ErhI	CCWWGG	2 cut(s)	43, 261
FaeI	CATG	4 cut(s)	17, 168, 373, 719
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	4 cut(s)	13, 164, 369, 715
FauNDI	CATATG	1 cut(s)	784
FbaI	TGATCA	1 cut(s)	592
Fnu4HI	GCNGC	3 cut(s)	52, 750, 861
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	3 cut(s)	92, 339, 821
Fsp4HI	GCNGC	3 cut(s)	52, 750, 861
FspBI	CTAG	2 cut(s)	728, 886
GluI	GCNGC	3 cut(s)	52, 750, 861
GsaI	CCCAGC	3 cut(s)	96, 155, 414
GsuI	CTGGAG	1 cut(s)	599
HaeIII	GGCC	4 cut(s)	54, 286, 586, 819
Hin1II	CATG	4 cut(s)	17, 168, 373, 719
HincII	GTYRAC	1 cut(s)	316
HindII	GTYRAC	1 cut(s)	316
HphI	GGTGA	3 cut(s)	90, 101, 202
Hpy166II	GTNNAC	4 cut(s)	225, 302, 316, 710
Hpy188I	TCNGA	6 cut(s)	106, 330, 362, 475, 597, 604
Hpy188III	TCNNGA	1 cut(s)	703
Hpy8I	GTNNAC	4 cut(s)	225, 302, 316, 710
HpyAV	CCTTC	3 cut(s)	315, 511, 823
HpyCH4III	ACNGT	5 cut(s)	320, 568, 671, 794, 854
HpyCH4V	TGCA	7 cut(s)	508, 558, 624, 749, 772, 860, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 876
HpyF3I	CTNAG	2 cut(s)	103, 327
Hsp92II	CATG	4 cut(s)	17, 168, 373, 719
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	106, 389, 542, 592, 599
LmnI	GCTCC	2 cut(s)	87, 775
Lsp1109I	GCAGC	2 cut(s)	761, 872
LweI	GCATC	1 cut(s)	619
MaeI	CTAG	2 cut(s)	728, 886
MaeIII	GTNAC	1 cut(s)	794
MalI	GATC	5 cut(s)	108, 391, 544, 594, 601
MbiI	CCGCTC	1 cut(s)	114
MboI	GATC	5 cut(s)	106, 389, 542, 592, 599
MboII	GAAGA	5 cut(s)	196, 199, 203, 467, 850
MflI	RGATCY	1 cut(s)	389
MhlI	GDGCHC	4 cut(s)	92, 339, 418, 821
MluCI	AATT	4 cut(s)	243, 252, 478, 571
Mph1103I	ATGCAT	1 cut(s)	560
MseI	TTAA	3 cut(s)	242, 251, 570
MslI	CAYNNNNRTG	3 cut(s)	12, 672, 855
MspA1I	CMGCKG	1 cut(s)	85
MwoI	GCNNNNNNNGC	2 cut(s)	75, 876
NdeI	CATATG	1 cut(s)	784
NdeII	GATC	5 cut(s)	106, 389, 542, 592, 599
NlaIII	CATG	4 cut(s)	17, 168, 373, 719
NlaIV	GGNNCC	3 cut(s)	89, 417, 819
NsiI	ATGCAT	1 cut(s)	560
NspI	RCATGY	1 cut(s)	168
OliI	CACNNNNGTG	2 cut(s)	672, 855
PaeR7I	CTCGAG	1 cut(s)	732
PceI	AGGCCT	1 cut(s)	586
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	3 cut(s)	53, 751, 862
PshBI	ATTAAT	2 cut(s)	242, 251
PsiI	TTATAA	1 cut(s)	662
PspFI	CCCAGC	3 cut(s)	92, 151, 410
PspN4I	GGNNCC	3 cut(s)	89, 417, 819
PspOMI	GGGCCC	1 cut(s)	817
PspPI	GGNCC	4 cut(s)	284, 302, 817, 818
PspXI	VCTCGAGB	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	778
PsuI	RGATCY	1 cut(s)	389
RsaI	GTAC	3 cut(s)	322, 344, 620
RsaNI	GTAC	3 cut(s)	321, 343, 619
RseI	CAYNNNNRTG	3 cut(s)	12, 672, 855
SaqAI	TTAA	3 cut(s)	242, 251, 570
SatI	GCNGC	3 cut(s)	52, 750, 861
Sau3AI	GATC	5 cut(s)	106, 389, 542, 592, 599
Sau96I	GGNCC	4 cut(s)	284, 302, 817, 818
ScaI	AGTACT	1 cut(s)	620
SduI	GDGCHC	4 cut(s)	92, 339, 418, 821
SfaNI	GCATC	1 cut(s)	619
Sfr274I	CTCGAG	1 cut(s)	732
SinI	GGWCC	1 cut(s)	302
SlaI	CTCGAG	1 cut(s)	732
SmiMI	CAYNNNNRTG	3 cut(s)	12, 672, 855
SmlI	CTYRAG	3 cut(s)	338, 703, 732
SmoI	CTYRAG	3 cut(s)	338, 703, 732
Sse9I	AATT	4 cut(s)	243, 252, 478, 571
SseBI	AGGCCT	1 cut(s)	586
SsiI	CCGC	4 cut(s)	21, 51, 85, 112
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	2 cut(s)	728, 886
StuI	AGGCCT	1 cut(s)	586
StyI	CCWWGG	2 cut(s)	43, 261
TaaI	ACNGT	5 cut(s)	320, 568, 671, 794, 854
TaqI	TCGA	2 cut(s)	180, 733
TasI	AATT	4 cut(s)	243, 252, 478, 571
TatI	WGTACW	1 cut(s)	618
TauI	GCSGC	1 cut(s)	54
Tru1I	TTAA	3 cut(s)	242, 251, 570
Tru9I	TTAA	3 cut(s)	242, 251, 570
TscAI	CASTG	3 cut(s)	582, 701, 857
TseI	GCWGC	2 cut(s)	749, 860
TspDTI	ATGAA	2 cut(s)	386, 530
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	3 cut(s)	582, 701, 857
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	302
VspI	ATTAAT	2 cut(s)	242, 251
XceI	RCATGY	1 cut(s)	168
XhoI	CTCGAG	1 cut(s)	732
XspI	CTAG	2 cut(s)	728, 886
ZrmI	AGTACT	1 cut(s)	620
Zsp2I	ATGCAT	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.