FvH4_4g22710

histone-lysine N-methyltransferase, H3 lysine-9 specific

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
25435076 .. 25441396
6321 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g22710.t2

Sequence Viewer

Length: 1371 bp
ATGGTGGTTGTAGGGTTTCATAGCCACTGGTTGAATGGAATTGATATCATTGGAAAATCTAAAGGAAAGGACAAATTTAAAGGCTATACCTTACCAATTGCAGTAGCGATTGTGTTGTCCGGTCAATATGAAGATGATGTTGATAACTCAGATGAAATTGTGTACACTGGCCAAGGTGGAAATGACTTACTTGGTAATAAACGTCAAATCCAAGATCAAGTAATGCGTGCGGGTAATTTGGCTCTTAAGAATAATATGGAGCAGTTCATTCCCGTCAGAGTCATCCGTGGTCATAAATGTGACACTAGCTATACTAAGAAAGTTTATACATATGATGGATTGTACCAGGTTCACCATTATTGGGCAGAGAAGGGTGTAGCTGGGTTTACCGTATTTAAGTACCGTTTGAAGCGACTTCCAGGTCAACCTAAATTGATCAGTAATCAGGTTTTATATACTAATGGGAAAGGGTCTAAAGCTCAGTCTGAATTACCTGGGTTGGTGTGCAAGGACATTTGCAATGGTCTAGAAAATATAGAAGTTCCAGTTACCAATATAGTTGATATACCTCCTGTAGCGCCCGAAGGCCTTACATATATCACAACTACTGAAGTTGCTAAGAGTGTATGCATTCCACCACGTGCTCGTGGGTGTGATTGTGAGGGAAACTGTACTAATTCAAGGACTTGTTCCTGCGCTCAACTCAACGGTGGTGACTTCCCTTACGTTAGCAGAGATGGTGGAAGATTGGTTGAAGCAAAGGCTGTTGTGTTTGAGTGCGGTCCACAATGTGGCTGTGGACCAAATTGTGTGAATCGCACATCTCAACGAGGATTGAAATATCGACTTGAGGTATTTCGGACACATGACAAAGGCTGGGCTGTTAGATCTTGGGACTTTATTCCTTCTGGTGCACCAGTATGTGAATACATTGCAGTTCTTAGGAGGAATGATGAAATAGACAATATCTCAGAGAAAGAAAATGAGTATGTATTTGAAATTGATTGCTGGCAGACGATGAATGGAATTGGGAGAAGAGAGAAACGAATGGGGACTGTGGCTATTCCAAATAGTGATGCCATATCAGAAAGTGATCCCGAGTATTGCTATGATGCGGGTTCACGTGGCAATGTAGCTAGATATATCAATCATAGTTGTGAGCCAAACCTCTTTGTACAGTGTGTTTTGAGGGAGCATCATGATGTTAGTCTTGCTAGAATTGTGCTATTCGCTGCAGATAACATACCTCCATTGCAGGAACTTTCATATGACTATGGATATGAACTCAACAGCGTGGTTGGTCCTGATGGAGAAATAAAGAAGTTATTTTGCCGTTGTGGTGCAGCCGGCTGTAGAAAGCGTTTGTACTAG

Protein Analysis

457

Amino Acids

50.74

Weight (kDa)

7.04

Isoelectric Point (pI)

30.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAD_SRA PF02182 222 - 381 2.1e-52 SAD/SRA domain
Pre-SET PF05033 413 - 512 3.9e-17 Pre-SET motif
SET PF00856 531 - 665 4.6e-17 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 420
AccB7I CCANNNNNTGG 1 cut(s) 791
AciI CCGC 3 cut(s) 230, 780, 1115
AclWI GGATC 1 cut(s) 1088
AcoI YGGCCR 1 cut(s) 169
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 630
AcvI CACGTG 2 cut(s) 641, 1124
AdeI CACNNNGTG 2 cut(s) 641, 791
AfaI GTAC 6 cut(s) 164, 344, 401, 673, 1176, 1367
AfiI CCNNNNNNNGG 2 cut(s) 361, 791
AflII CTTAAG 1 cut(s) 245
AgsI TTSAA 6 cut(s) 34, 409, 681, 755, 838, 998
AjnI CCWGG 3 cut(s) 345, 418, 493
AluBI AGCT 4 cut(s) 309, 380, 479, 1136
AluI AGCT 4 cut(s) 309, 380, 479, 1136
Alw21I GWGCWC 2 cut(s) 646, 916
Alw44I GTGCAC 1 cut(s) 912
AlwI GGATC 1 cut(s) 1088
Ama87I CYCGRG 1 cut(s) 1097
AoxI GGCC 2 cut(s) 169, 586
ApaLI GTGCAC 1 cut(s) 912
ApeKI GCWGC 2 cut(s) 1232, 1343
ApoI RAATTY 1 cut(s) 74
AspLEI GCGC 2 cut(s) 580, 698
AspS9I GGNCC 3 cut(s) 782, 800, 1301
AsuHPI GGTGA 2 cut(s) 344, 725
AvaI CYCGRG 1 cut(s) 1097
AvaII GGWCC 3 cut(s) 782, 800, 1301
BaeGI GKGCMC 1 cut(s) 916
BalI TGGCCA 1 cut(s) 171
BauI CACGAG 1 cut(s) 645
BbrPI CACGTG 2 cut(s) 641, 1124
Bbv12I GWGCWC 2 cut(s) 646, 916
BbvI GCAGC 2 cut(s) 1219, 1355
BccI CCATC 3 cut(s) 329, 731, 1301
BceAI ACGGC 1 cut(s) 1317
BciT130I CCWGG 3 cut(s) 347, 420, 495
BclI TGATCA 1 cut(s) 435
BfaI CTAG 5 cut(s) 306, 527, 1137, 1215, 1369
BfmI CTRYAG 3 cut(s) 573, 1233, 1351
BfoI RGCGCY 1 cut(s) 581
BfrI CTTAAG 1 cut(s) 245
BglII AGATCT 1 cut(s) 887
BisI GCNGC 2 cut(s) 1233, 1344
BlsI GCNGC 2 cut(s) 1234, 1345
Bme1390I CCNGG 3 cut(s) 347, 420, 495
Bme18I GGWCC 3 cut(s) 782, 800, 1301
BmeT110I CYCGRG 1 cut(s) 1097
BmgT120I GGNCC 3 cut(s) 782, 800, 1301
BmrFI CCNGG 3 cut(s) 347, 420, 495
BmsI GCATC 3 cut(s) 1066, 1102, 1204
BpuEI CTTGAG 1 cut(s) 869
BsaAI YACGTR 2 cut(s) 641, 1124
BsaJI CCNNGG 3 cut(s) 172, 286, 494
BsaWI WCCGGW 1 cut(s) 119
Bsc4I CCNNNNNNNGG 2 cut(s) 361, 791
Bse118I RCCGGY 1 cut(s) 1346
Bse1I ACTGG 4 cut(s) 32, 172, 545, 917
Bse3DI GCAATG 4 cut(s) 526, 930, 1135, 1250
BseBI CCWGG 3 cut(s) 347, 420, 495
BseDI CCNNGG 3 cut(s) 172, 286, 494
BseGI GGATG 1 cut(s) 282
BseLI CCNNNNNNNGG 2 cut(s) 361, 791
BseMI GCAATG 4 cut(s) 526, 930, 1135, 1250
BseMII CTCAG 3 cut(s) 162, 494, 984
BseNI ACTGG 4 cut(s) 32, 172, 545, 917
BseSI GKGCMC 1 cut(s) 916
BseXI GCAGC 2 cut(s) 1219, 1355
BseYI CCCAGC 2 cut(s) 380, 876
BsgI GTGCAG 1 cut(s) 1362
BshFI GGCC 2 cut(s) 171, 588
BsiHKAI GWGCWC 2 cut(s) 646, 916
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 2 cut(s) 120, 1347
BslFI GGGAC 2 cut(s) 908, 1066
BslI CCNNNNNNNGG 2 cut(s) 361, 791
BsmFI GGGAC 2 cut(s) 908, 1066
BsmI GAATGC 1 cut(s) 630
BsnI GGCC 2 cut(s) 171, 588
BsoBI CYCGRG 1 cut(s) 1097
Bsp1286I GDGCHC 2 cut(s) 646, 916
Bsp1407I TGTACA 2 cut(s) 162, 1174
Bsp143I GATC 4 cut(s) 214, 435, 887, 1093
BspACI CCGC 3 cut(s) 230, 780, 1115
BspANI GGCC 2 cut(s) 171, 588
BspCNI CTCAG 3 cut(s) 161, 493, 983
BspHI TCATGA 1 cut(s) 1198
BspMAI CTGCAG 1 cut(s) 1237
BspPI GGATC 1 cut(s) 1088
BspTI CTTAAG 1 cut(s) 245
BsrDI GCAATG 4 cut(s) 526, 930, 1135, 1250
BsrFI RCCGGY 1 cut(s) 1346
BsrGI TGTACA 2 cut(s) 162, 1174
BsrI ACTGG 4 cut(s) 32, 172, 545, 917
BssAI RCCGGY 1 cut(s) 1346
BssECI CCNNGG 3 cut(s) 172, 286, 494
BssMI GATC 4 cut(s) 214, 435, 887, 1093
BssSI CACGAG 1 cut(s) 645
BssT1I CCWWGG 1 cut(s) 172
Bst2BI CACGAG 1 cut(s) 645
Bst2UI CCWGG 3 cut(s) 347, 420, 495
Bst4CI ACNGT 6 cut(s) 391, 404, 671, 710, 1057, 1179
Bst6I CTCTTC 1 cut(s) 1030
BstAFI CTTAAG 1 cut(s) 245
BstAUI TGTACA 2 cut(s) 162, 1174
BstBAI YACGTR 2 cut(s) 641, 1124
BstC8I GCNNGC 3 cut(s) 228, 1010, 1348
BstDEI CTNAG 6 cut(s) 148, 315, 480, 618, 941, 970
BstDSI CCRYGG 1 cut(s) 286
BstF5I GGATG 1 cut(s) 282
BstH2I RGCGCY 1 cut(s) 581
BstHHI GCGC 2 cut(s) 580, 698
BstKTI GATC 4 cut(s) 217, 438, 890, 1096
BstMBI GATC 4 cut(s) 214, 435, 887, 1093
BstNI CCWGG 3 cut(s) 347, 420, 495
BstSCI CCNGG 3 cut(s) 345, 418, 493
BstSFI CTRYAG 3 cut(s) 573, 1233, 1351
BstSLI GKGCMC 1 cut(s) 916
BstV1I GCAGC 2 cut(s) 1219, 1355
BstX2I RGATCY 1 cut(s) 887
BstYI RGATCY 1 cut(s) 887
BsuRI GGCC 2 cut(s) 171, 588
BtgI CCRYGG 1 cut(s) 286
BtsCI GGATG 1 cut(s) 282
BtsIMutI CAGTG 3 cut(s) 25, 165, 1184
Cac8I GCNNGC 3 cut(s) 228, 1010, 1348
CciI TCATGA 1 cut(s) 1198
CfoI GCGC 2 cut(s) 580, 698
Cfr10I RCCGGY 1 cut(s) 1346
Cfr13I GGNCC 3 cut(s) 782, 800, 1301
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 6 cut(s) 163, 343, 400, 672, 1175, 1366
CviAII CATG 2 cut(s) 866, 1199
CviQI GTAC 6 cut(s) 163, 343, 400, 672, 1175, 1366
DdeI CTNAG 6 cut(s) 148, 315, 480, 618, 941, 970
DpnI GATC 4 cut(s) 216, 437, 889, 1095
DpnII GATC 4 cut(s) 214, 435, 887, 1093
DraI TTTAAA 1 cut(s) 79
DraIII CACNNNGTG 2 cut(s) 641, 791
DrdI GACNNNNNNGTC 1 cut(s) 420
DseDI GACNNNNNNGTC 1 cut(s) 420
EaeI YGGCCR 1 cut(s) 169
Eam1104I CTCTTC 1 cut(s) 1030
EarI CTCTTC 1 cut(s) 1030
Eco130I CCWWGG 1 cut(s) 172
Eco147I AGGCCT 1 cut(s) 588
Eco32I GATATC 1 cut(s) 46
Eco47I GGWCC 3 cut(s) 782, 800, 1301
Eco57I CTGAAG 1 cut(s) 630
Eco72I CACGTG 2 cut(s) 641, 1124
Eco88I CYCGRG 1 cut(s) 1097
EcoRII CCWGG 3 cut(s) 345, 418, 493
EcoRV GATATC 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 172
EcoT22I ATGCAT 1 cut(s) 632
ErhI CCWWGG 1 cut(s) 172
FaeI CATG 2 cut(s) 869, 1202
FaqI GGGAC 2 cut(s) 908, 1066
FatI CATG 2 cut(s) 865, 1198
FauI CCCGC 2 cut(s) 223, 1108
FauNDI CATATG 2 cut(s) 331, 1267
FbaI TGATCA 1 cut(s) 435
Fnu4HI GCNGC 2 cut(s) 1233, 1344
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 2 cut(s) 1233, 1344
FspBI CTAG 5 cut(s) 306, 527, 1137, 1215, 1369
GlaI GCGC 2 cut(s) 579, 697
GluI GCNGC 2 cut(s) 1233, 1344
GsaI CCCAGC 2 cut(s) 384, 880
HaeII RGCGCY 1 cut(s) 581
HaeIII GGCC 2 cut(s) 171, 588
HapII CCGG 2 cut(s) 120, 1347
HhaI GCGC 2 cut(s) 580, 698
Hin1II CATG 2 cut(s) 869, 1202
Hin6I GCGC 2 cut(s) 578, 696
HinP1I GCGC 2 cut(s) 578, 696
HincII GTYRAC 1 cut(s) 425
HindII GTYRAC 1 cut(s) 425
HinfI GANTC 2 cut(s) 279, 814
HpaII CCGG 2 cut(s) 120, 1347
HphI GGTGA 2 cut(s) 344, 725
Hpy166II GTNNAC 9 cut(s) 163, 165, 352, 387, 425, 785, 800, 914, 1121
Hpy188I TCNGA 6 cut(s) 151, 278, 487, 861, 973, 1087
Hpy188III TCNNGA 4 cut(s) 527, 1097, 1199, 1304
Hpy8I GTNNAC 9 cut(s) 163, 165, 352, 387, 425, 785, 800, 914, 1121
HpyAV CCTTC 3 cut(s) 364, 578, 915
HpyCH4III ACNGT 6 cut(s) 391, 404, 671, 710, 1057, 1179
HpyCH4IV ACGT 4 cut(s) 202, 640, 726, 1123
HpyCH4V TGCA 9 cut(s) 101, 507, 519, 630, 914, 935, 1235, 1255, 1343
HpyF3I CTNAG 6 cut(s) 148, 315, 480, 618, 941, 970
HpySE526I ACGT 4 cut(s) 202, 640, 726, 1123
Hsp92II CATG 2 cut(s) 869, 1202
HspAI GCGC 2 cut(s) 578, 696
KroI GCCGGC 1 cut(s) 1346
KroNI GCCGGC 1 cut(s) 1348
Ksp22I TGATCA 1 cut(s) 435
Kzo9I GATC 4 cut(s) 214, 435, 887, 1093
LmnI GCTCC 2 cut(s) 259, 1192
Lsp1109I GCAGC 2 cut(s) 1219, 1355
LweI GCATC 3 cut(s) 1066, 1102, 1204
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 5 cut(s) 306, 527, 1137, 1215, 1369
MaeII ACGT 4 cut(s) 202, 640, 726, 1123
MaeIII GTNAC 3 cut(s) 299, 547, 713
MalI GATC 4 cut(s) 216, 437, 889, 1095
MboI GATC 4 cut(s) 214, 435, 887, 1093
MboII GAAGA 3 cut(s) 143, 756, 1047
MfeI CAATTG 1 cut(s) 96
MflI RGATCY 1 cut(s) 887
MhlI GDGCHC 2 cut(s) 646, 916
MlsI TGGCCA 1 cut(s) 171
MluNI TGGCCA 1 cut(s) 171
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 8 cut(s) 579, 655, 824, 844, 939, 1178, 1182, 1257
Mox20I TGGCCA 1 cut(s) 171
Mph1103I ATGCAT 1 cut(s) 632
MroNI GCCGGC 1 cut(s) 1346
MscI TGGCCA 1 cut(s) 171
MseI TTAA 3 cut(s) 78, 246, 396
MslI CAYNNNNRTG 4 cut(s) 297, 919, 1155, 1200
Msp20I TGGCCA 1 cut(s) 171
MspCI CTTAAG 1 cut(s) 245
MspI CCGG 2 cut(s) 120, 1347
MspR9I CCNGG 3 cut(s) 347, 420, 495
MunI CAATTG 1 cut(s) 96
Mva1269I GAATGC 1 cut(s) 630
MvaI CCWGG 3 cut(s) 347, 420, 495
NaeI GCCGGC 1 cut(s) 1348
NdeI CATATG 2 cut(s) 331, 1267
NdeII GATC 4 cut(s) 214, 435, 887, 1093
NgoMIV GCCGGC 1 cut(s) 1346
NlaIII CATG 2 cut(s) 869, 1202
NmuCI GTSAC 2 cut(s) 299, 713
NsiI ATGCAT 1 cut(s) 632
PagI TCATGA 1 cut(s) 1198
PceI AGGCCT 1 cut(s) 588
PctI GAATGC 1 cut(s) 630
PdiI GCCGGC 1 cut(s) 1348
PfeI GAWTC 1 cut(s) 814
PflMI CCANNNNNTGG 1 cut(s) 791
PkrI GCNGC 2 cut(s) 1234, 1345
PleI GAGTC 1 cut(s) 287
PmaCI CACGTG 2 cut(s) 641, 1124
PmlI CACGTG 2 cut(s) 641, 1124
PpsI GAGTC 1 cut(s) 287
Ppu21I YACGTR 2 cut(s) 641, 1124
Psp6I CCWGG 3 cut(s) 345, 418, 493
PspCI CACGTG 2 cut(s) 641, 1124
PspFI CCCAGC 2 cut(s) 380, 876
PspGI CCWGG 3 cut(s) 345, 418, 493
PspPI GGNCC 3 cut(s) 782, 800, 1301
PstI CTGCAG 1 cut(s) 1237
PsuI RGATCY 1 cut(s) 887
RsaI GTAC 6 cut(s) 164, 344, 401, 673, 1176, 1367
RsaNI GTAC 6 cut(s) 163, 343, 400, 672, 1175, 1366
RseI CAYNNNNRTG 4 cut(s) 297, 919, 1155, 1200
SaqAI TTAA 3 cut(s) 78, 246, 396
SatI GCNGC 2 cut(s) 1233, 1344
Sau3AI GATC 4 cut(s) 214, 435, 887, 1093
Sau96I GGNCC 3 cut(s) 782, 800, 1301
SchI GAGTC 1 cut(s) 288
ScrFI CCNGG 3 cut(s) 347, 420, 495
SduI GDGCHC 2 cut(s) 646, 916
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 3 cut(s) 1066, 1102, 1204
SfcI CTRYAG 3 cut(s) 573, 1233, 1351
SinI GGWCC 3 cut(s) 782, 800, 1301
SmiMI CAYNNNNRTG 4 cut(s) 297, 919, 1155, 1200
SmlI CTYRAG 2 cut(s) 245, 848
SmoI CTYRAG 2 cut(s) 245, 848
SseBI AGGCCT 1 cut(s) 588
SsiI CCGC 3 cut(s) 230, 780, 1115
SspMI CTAG 5 cut(s) 306, 527, 1137, 1215, 1369
StuI AGGCCT 1 cut(s) 588
StyD4I CCNGG 3 cut(s) 345, 418, 493
StyI CCWWGG 1 cut(s) 172
TaaI ACNGT 6 cut(s) 391, 404, 671, 710, 1057, 1179
TaiI ACGT 4 cut(s) 205, 643, 729, 1126
TaqI TCGA 1 cut(s) 844
TatI WGTACW 4 cut(s) 162, 671, 1174, 1365
TfiI GAWTC 1 cut(s) 814
Tru1I TTAA 3 cut(s) 78, 246, 396
Tru9I TTAA 3 cut(s) 78, 246, 396
TscAI CASTG 3 cut(s) 32, 172, 1184
TseFI GTSAC 2 cut(s) 299, 713
TseI GCWGC 2 cut(s) 1232, 1343
Tsp45I GTSAC 2 cut(s) 299, 713
TspDTI ATGAA 8 cut(s) 8, 144, 168, 256, 969, 1034, 1254, 1296
TspGWI ACGGA 1 cut(s) 275
TspRI CASTG 3 cut(s) 32, 172, 1184
Van91I CCANNNNNTGG 1 cut(s) 791
Vha464I CTTAAG 1 cut(s) 245
VneI GTGCAC 1 cut(s) 912
VpaK11BI GGWCC 3 cut(s) 782, 800, 1301
XapI RAATTY 1 cut(s) 74
XbaI TCTAGA 1 cut(s) 526
XcmI CCANNNNNNNNNTGG 1 cut(s) 32
XspI CTAG 5 cut(s) 306, 527, 1137, 1215, 1369
Zsp2I ATGCAT 1 cut(s) 632
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.