Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

173078 .. 175002

Gene Structure 1925 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g00210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTTCTGGCGATCACAAGCTGTATCCATACCAGCCGTTCATTCACTGGAGAGACCTGATGATCAGAGCTCTGATAGTGGGCCAGAGTTCTGCATTGATGCAGGTTCAACTGGAAACATAGCAAGATTTATAAATCACAGTTGTGAGCCCAATCTGTTTGTCCAGTCTGTGTTGAGCTCACACCACGACTTAAAACTAGCTCGGGTGATGTTGTTTGCTGCGGACAACATACCTCCTTTGCAGGAGCTCACGTATGACTATGGCTATGCCCTTGATAGCGTCTTGGGTCCCGATGGGAAAGTGAAAAAGATGTTCTGCCATTGTGGTGCCGCAGGTTGCAGGAAGCGCTTATTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

119

Amino Acids

13.02

Weight (kDa)

6.16

Isoelectric Point (pI)

54.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	131
Acc36I	ACCTGC	2 cut(s)	92, 323
AccB1I	GGYRCC	1 cut(s)	326
AciI	CCGC	2 cut(s)	221, 330
AfeI	AGCGCT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	108
AleI	CACNNNNGTG	1 cut(s)	141
AluBI	AGCT	5 cut(s)	20, 69, 177, 200, 247
AluI	AGCT	5 cut(s)	20, 69, 177, 200, 247
Alw21I	GWGCWC	3 cut(s)	71, 179, 249
Alw26I	GTCTC	1 cut(s)	46
Ama87I	CYCGRG	1 cut(s)	201
Aor51HI	AGCGCT	1 cut(s)	347
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	80, 287
AsuHPI	GGTGA	1 cut(s)	217
AvaI	CYCGRG	1 cut(s)	201
AvaII	GGWCC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	326
BanII	GRGCYC	4 cut(s)	71, 150, 179, 249
Bbv12I	GWGCWC	3 cut(s)	71, 179, 249
BbvI	GCAGC	1 cut(s)	205
BccI	CCATC	1 cut(s)	287
BceAI	ACGGC	1 cut(s)	20
BciVI	GTATCC	1 cut(s)	34
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	1 cut(s)	46
BfaI	CTAG	2 cut(s)	197, 355
BfoI	RGCGCY	1 cut(s)	349
BfuAI	ACCTGC	2 cut(s)	92, 323
BfuI	GTATCC	1 cut(s)	34
BisI	GCNGC	2 cut(s)	219, 330
BlsI	GCNGC	2 cut(s)	220, 331
Bme18I	GGWCC	1 cut(s)	287
BmeT110I	CYCGRG	1 cut(s)	201
BmgT120I	GGNCC	2 cut(s)	80, 287
BmiI	GGNNCC	3 cut(s)	288, 289, 328
BmsI	GCATC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	68
BsaAI	YACGTR	1 cut(s)	252
BsaI	GGTCTC	1 cut(s)	46
BsaXI	ACNNNNNCTCC	2 cut(s)	236, 266
Bse1I	ACTGG	3 cut(s)	51, 115, 163
BseNI	ACTGG	3 cut(s)	51, 115, 163
BseXI	GCAGC	1 cut(s)	205
BshFI	GGCC	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	326
BsiHKAI	GWGCWC	3 cut(s)	71, 179, 249
BsiHKCI	CYCGRG	1 cut(s)	201
BslFI	GGGAC	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	46
BsmFI	GGGAC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	82
Bso31I	GGTCTC	1 cut(s)	46
BsoBI	CYCGRG	1 cut(s)	201
Bsp1286I	GDGCHC	4 cut(s)	71, 150, 179, 249
Bsp143I	GATC	2 cut(s)	11, 61
BspACI	CCGC	2 cut(s)	221, 330
BspANI	GGCC	1 cut(s)	82
BspLI	GGNNCC	3 cut(s)	288, 289, 328
BspMI	ACCTGC	2 cut(s)	92, 323
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	46
BsrI	ACTGG	3 cut(s)	51, 115, 163
BssMI	GATC	2 cut(s)	11, 61
Bst4CI	ACNGT	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	252
BstH2I	RGCGCY	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	14, 64
BstMAI	GTCTC	1 cut(s)	46
BstMBI	GATC	2 cut(s)	11, 61
BstMWI	GCNNNNNNNGC	1 cut(s)	345
BstV1I	GCAGC	1 cut(s)	205
BsuI	GTATCC	1 cut(s)	34
BsuRI	GGCC	1 cut(s)	82
BtsIMutI	CAGTG	1 cut(s)	44
BveI	ACCTGC	2 cut(s)	92, 323
CfoI	GCGC	1 cut(s)	348
Cfr13I	GGNCC	2 cut(s)	80, 287
CseI	GACGC	1 cut(s)	268
CviJI	RGCY	9 cut(s)	20, 35, 69, 82, 148, 177, 200, 247, 264
CviKI_1	RGCY	9 cut(s)	20, 35, 69, 82, 148, 177, 200, 247, 264
DpnI	GATC	2 cut(s)	13, 63
DpnII	GATC	2 cut(s)	11, 61
Ecl136II	GAGCTC	3 cut(s)	69, 177, 247
Eco24I	GRGCYC	4 cut(s)	71, 150, 179, 249
Eco31I	GGTCTC	1 cut(s)	46
Eco47I	GGWCC	1 cut(s)	287
Eco47III	AGCGCT	1 cut(s)	347
Eco53kI	GAGCTC	3 cut(s)	69, 177, 247
Eco88I	CYCGRG	1 cut(s)	201
EcoICRI	GAGCTC	3 cut(s)	69, 177, 247
EcoO109I	RGGNCCY	1 cut(s)	287
EcoT38I	GRGCYC	4 cut(s)	71, 150, 179, 249
FaiI	YATR	7 cut(s)	29, 119, 131, 230, 255, 261, 267
FaqI	GGGAC	1 cut(s)	273
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	2 cut(s)	219, 330
FriOI	GRGCYC	4 cut(s)	71, 150, 179, 249
Fsp4HI	GCNGC	2 cut(s)	219, 330
FspBI	CTAG	2 cut(s)	197, 355
GlaI	GCGC	1 cut(s)	347
GluI	GCNGC	2 cut(s)	219, 330
GsuI	CTGGAG	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	349
HaeIII	GGCC	1 cut(s)	82
HgaI	GACGC	1 cut(s)	268
HhaI	GCGC	1 cut(s)	348
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	2 cut(s)	66, 73
Hpy188III	TCNNGA	1 cut(s)	290
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	4 cut(s)	93, 101, 241, 339
HpyF10VI	GCNNNNNNNGC	1 cut(s)	345
HpySE526I	ACGT	1 cut(s)	251
HspAI	GCGC	1 cut(s)	346
KflI	GGGWCCC	1 cut(s)	287
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	2 cut(s)	11, 61
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	1 cut(s)	205
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	2 cut(s)	197, 355
MaeII	ACGT	1 cut(s)	251
MalI	GATC	2 cut(s)	13, 63
MboI	GATC	2 cut(s)	11, 61
MhlI	GDGCHC	4 cut(s)	71, 150, 179, 249
MnlI	CCTC	1 cut(s)	243
MseI	TTAA	1 cut(s)	191
MslI	CAYNNNNRTG	2 cut(s)	141, 324
MwoI	GCNNNNNNNGC	1 cut(s)	345
NdeII	GATC	2 cut(s)	11, 61
NlaIV	GGNNCC	3 cut(s)	288, 289, 328
OliI	CACNNNNGTG	1 cut(s)	141
PkrI	GCNGC	2 cut(s)	220, 331
Ppu21I	YACGTR	1 cut(s)	252
PpuMI	RGGWCCY	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	131
Psp124BI	GAGCTC	3 cut(s)	71, 179, 249
Psp5II	RGGWCCY	1 cut(s)	287
PspN4I	GGNNCC	3 cut(s)	288, 289, 328
PspPI	GGNCC	2 cut(s)	80, 287
PspPPI	RGGWCCY	1 cut(s)	287
RseI	CAYNNNNRTG	2 cut(s)	141, 324
SacI	GAGCTC	3 cut(s)	71, 179, 249
SaqAI	TTAA	1 cut(s)	191
SatI	GCNGC	2 cut(s)	219, 330
Sau3AI	GATC	2 cut(s)	11, 61
Sau96I	GGNCC	2 cut(s)	80, 287
SduI	GDGCHC	4 cut(s)	71, 150, 179, 249
SfaNI	GCATC	1 cut(s)	88
SinI	GGWCC	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	141, 324
SsiI	CCGC	2 cut(s)	221, 330
SspMI	CTAG	2 cut(s)	197, 355
SstI	GAGCTC	3 cut(s)	71, 179, 249
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	332
Tru1I	TTAA	1 cut(s)	191
Tru9I	TTAA	1 cut(s)	191
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	1 cut(s)	218
TspDTI	ATGAA	1 cut(s)	29
TspRI	CASTG	1 cut(s)	51
VpaK11BI	GGWCC	1 cut(s)	287
XspI	CTAG	2 cut(s)	197, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.