Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0026969.1

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2092

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0026969.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

atgtttcttacttatggattttcttctgttctcttgcagaataatatggagcagttcgttccagtcagagtcatccgtgagaagggtgtagctgggtttaccgtatttaagtaccgtctgaagcgtcttccagggcagcctaaattgatcagtaatcaggttttatatactaatgggaaagggtctaaagctcagtctgaattacctgggttggtgtgcaaggacatttgcaatggtctagaaaatataaaagttccagttaccaatatagttgatattcctcctgtagcacctgaaggccttacatatatcacaactactgaagttgcaaaaggtgtgaagattccaccacgtgctcatgggtgcaattgccagggaaactgtaccaattcaaagacttgttcctgtgctcaactcaatggtggtgacttcccttacgttagcaaagatggtggaagattggttgaagcaaaggctgttgtgtttgagtgtggtccacaatgtggctgtggaccaagttgtgtgaatcgtgcatctcaacggggattgaagtatcgacttgaggtgtttcggacacatgacaaaggctgggccgttaggtcttgggactttattccttctggtgcaccagtatgtgaatacattgcagttcttaggaggaatgatgaaatagacaatatctcagagaaggagaatgagtatgtatttgaaattgattgctggcagacaatgaatggaattgggggaagagag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

251

Amino Acids

27.66

Weight (kDa)

8.52

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	503
AcuI	CTGAAG	3 cut(s)	140, 315, 342
AcvI	CACGTG	1 cut(s)	353
AdeI	CACNNNGTG	2 cut(s)	353, 503
AfaI	GTAC	2 cut(s)	113, 385
AfiI	CCNNNNNNNGG	2 cut(s)	82, 503
AgsI	TTSAA	4 cut(s)	393, 467, 550, 710
AjnI	CCWGG	3 cut(s)	130, 205, 372
AluBI	AGCT	2 cut(s)	92, 191
AluI	AGCT	2 cut(s)	92, 191
Alw21I	GWGCWC	3 cut(s)	358, 412, 628
Alw44I	GTGCAC	1 cut(s)	624
AoxI	GGCC	2 cut(s)	298, 591
ApaLI	GTGCAC	1 cut(s)	624
ApeKI	GCWGC	1 cut(s)	136
AspS9I	GGNCC	3 cut(s)	494, 512, 591
AsuHPI	GGTGA	1 cut(s)	437
AvaII	GGWCC	2 cut(s)	494, 512
BaeGI	GKGCMC	1 cut(s)	628
BbrPI	CACGTG	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	119
Bbv12I	GWGCWC	3 cut(s)	358, 412, 628
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	443
BceAI	ACGGC	1 cut(s)	578
BciT130I	CCWGG	3 cut(s)	132, 207, 374
BclI	TGATCA	1 cut(s)	147
BfaI	CTAG	1 cut(s)	239
BfmI	CTRYAG	1 cut(s)	285
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	3 cut(s)	132, 207, 374
Bme18I	GGWCC	2 cut(s)	494, 512
BmgT120I	GGNCC	3 cut(s)	494, 512, 591
BmrFI	CCNGG	3 cut(s)	132, 207, 374
BmsI	GCATC	1 cut(s)	542
BpiI	GAAGAC	1 cut(s)	119
BpuEI	CTTGAG	1 cut(s)	581
BsaAI	YACGTR	1 cut(s)	353
BsaJI	CCNNGG	3 cut(s)	131, 206, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	683, 713
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 503
Bse1I	ACTGG	3 cut(s)	62, 257, 629
Bse3DI	GCAATG	2 cut(s)	238, 642
BseBI	CCWGG	3 cut(s)	132, 207, 374
BseDI	CCNNGG	3 cut(s)	131, 206, 373
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	2 cut(s)	82, 503
BseMI	GCAATG	2 cut(s)	238, 642
BseMII	CTCAG	2 cut(s)	206, 696
BseNI	ACTGG	3 cut(s)	62, 257, 629
BseSI	GKGCMC	1 cut(s)	628
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	2 cut(s)	92, 588
BshFI	GGCC	2 cut(s)	300, 593
BsiHKAI	GWGCWC	3 cut(s)	358, 412, 628
BslFI	GGGAC	1 cut(s)	620
BslI	CCNNNNNNNGG	2 cut(s)	82, 503
BsmFI	GGGAC	1 cut(s)	620
BsnI	GGCC	2 cut(s)	300, 593
Bsp1286I	GDGCHC	3 cut(s)	358, 412, 628
Bsp143I	GATC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	300, 593
BspCNI	CTCAG	2 cut(s)	205, 695
BsrDI	GCAATG	2 cut(s)	238, 642
BsrI	ACTGG	3 cut(s)	62, 257, 629
BssECI	CCNNGG	3 cut(s)	131, 206, 373
BssMI	GATC	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	132, 207, 374
Bst4CI	ACNGT	3 cut(s)	103, 116, 383
Bst6I	CTCTTC	1 cut(s)	742
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	1 cut(s)	722
BstDEI	CTNAG	3 cut(s)	192, 653, 682
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	1 cut(s)	150
BstMBI	GATC	1 cut(s)	147
BstNI	CCWGG	3 cut(s)	132, 207, 374
BstSCI	CCNGG	3 cut(s)	130, 205, 372
BstSFI	CTRYAG	1 cut(s)	285
BstSLI	GKGCMC	1 cut(s)	628
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	119
BsuRI	GGCC	2 cut(s)	300, 593
BtsCI	GGATG	1 cut(s)	72
Cac8I	GCNNGC	1 cut(s)	722
Cfr13I	GGNCC	3 cut(s)	494, 512, 591
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	2 cut(s)	112, 384
CspCI	CAANNNNNGTGG	2 cut(s)	433, 468
CviAII	CATG	2 cut(s)	359, 578
CviJI	RGCY	8 cut(s)	92, 139, 191, 300, 476, 507, 588, 593
CviKI_1	RGCY	8 cut(s)	92, 139, 191, 300, 476, 507, 588, 593
CviQI	GTAC	2 cut(s)	112, 384
DdeI	CTNAG	3 cut(s)	192, 653, 682
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DraIII	CACNNNGTG	2 cut(s)	353, 503
Eam1104I	CTCTTC	1 cut(s)	742
EarI	CTCTTC	1 cut(s)	742
Eco147I	AGGCCT	1 cut(s)	300
Eco47I	GGWCC	2 cut(s)	494, 512
Eco57I	CTGAAG	3 cut(s)	140, 315, 342
Eco72I	CACGTG	1 cut(s)	353
EcoRII	CCWGG	3 cut(s)	130, 205, 372
FaeI	CATG	2 cut(s)	362, 581
FaqI	GGGAC	1 cut(s)	620
FatI	CATG	2 cut(s)	358, 577
FbaI	TGATCA	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	1 cut(s)	59
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	239
GluI	GCNGC	1 cut(s)	137
GsaI	CCCAGC	2 cut(s)	96, 592
HaeIII	GGCC	2 cut(s)	300, 593
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	362, 581
HinfI	GANTC	3 cut(s)	69, 343, 526
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	4 cut(s)	99, 497, 512, 626
Hpy188I	TCNGA	5 cut(s)	68, 120, 199, 573, 685
Hpy188III	TCNNGA	1 cut(s)	239
Hpy8I	GTNNAC	4 cut(s)	99, 497, 512, 626
HpyAV	CCTTC	4 cut(s)	76, 290, 627, 682
HpyCH4III	ACNGT	3 cut(s)	103, 116, 383
HpyCH4IV	ACGT	2 cut(s)	352, 438
HpyCH4V	TGCA	8 cut(s)	37, 219, 231, 329, 366, 533, 626, 647
HpyF3I	CTNAG	3 cut(s)	192, 653, 682
HpySE526I	ACGT	2 cut(s)	352, 438
Hsp92II	CATG	2 cut(s)	362, 581
Ksp22I	TGATCA	1 cut(s)	147
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	542
MaeI	CTAG	1 cut(s)	239
MaeII	ACGT	2 cut(s)	352, 438
MaeIII	GTNAC	2 cut(s)	259, 425
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	15, 119, 352, 468
MfeI	CAATTG	1 cut(s)	367
MhlI	GDGCHC	3 cut(s)	358, 412, 628
MluCI	AATT	6 cut(s)	143, 200, 367, 388, 711, 738
MlyI	GAGTC	1 cut(s)	78
MnlI	CCTC	3 cut(s)	291, 556, 651
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	631
MspR9I	CCNGG	3 cut(s)	132, 207, 374
MunI	CAATTG	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	132, 207, 374
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	362, 581
NmuCI	GTSAC	1 cut(s)	425
PceI	AGGCCT	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	343, 526
PflMI	CCANNNNNTGG	1 cut(s)	503
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	77
PmaCI	CACGTG	1 cut(s)	353
PmlI	CACGTG	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	77
Ppu21I	YACGTR	1 cut(s)	353
Psp6I	CCWGG	3 cut(s)	130, 205, 372
PspCI	CACGTG	1 cut(s)	353
PspFI	CCCAGC	2 cut(s)	92, 588
PspGI	CCWGG	3 cut(s)	130, 205, 372
PspPI	GGNCC	3 cut(s)	494, 512, 591
RsaI	GTAC	2 cut(s)	113, 385
RsaNI	GTAC	2 cut(s)	112, 384
RseI	CAYNNNNRTG	1 cut(s)	631
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	3 cut(s)	494, 512, 591
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	3 cut(s)	132, 207, 374
SduI	GDGCHC	3 cut(s)	358, 412, 628
SfaNI	GCATC	1 cut(s)	542
SfcI	CTRYAG	1 cut(s)	285
SinI	GGWCC	2 cut(s)	494, 512
SmiMI	CAYNNNNRTG	1 cut(s)	631
SmlI	CTYRAG	1 cut(s)	560
SmoI	CTYRAG	1 cut(s)	560
Sse9I	AATT	6 cut(s)	143, 200, 367, 388, 711, 738
SseBI	AGGCCT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	239
StuI	AGGCCT	1 cut(s)	300
StyD4I	CCNGG	3 cut(s)	130, 205, 372
TaaI	ACNGT	3 cut(s)	103, 116, 383
TaiI	ACGT	2 cut(s)	355, 441
TaqI	TCGA	1 cut(s)	556
TasI	AATT	6 cut(s)	143, 200, 367, 388, 711, 738
TfiI	GAWTC	2 cut(s)	343, 526
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	425
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	425
TspDTI	ATGAA	2 cut(s)	681, 746
TspGWI	ACGGA	1 cut(s)	65
Van91I	CCANNNNNTGG	1 cut(s)	503
VneI	GTGCAC	1 cut(s)	624
VpaK11BI	GGWCC	2 cut(s)	494, 512
XbaI	TCTAGA	1 cut(s)	238
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.