Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

57057154 .. 57063418

Gene Structure 6265 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG309000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2085 bp

ATGGCTGCACCGAAGGATTCAGTTCTGGAGCGCCGGGTGAGCCCCCGGCTTCAGTACGCTCAGCAGAAGCCTTTCTATGGTACTAGGAAGAGGACGGAATCGGAGGCCGGTCGAAACTGCGTCGTTGTGAGCAAGAAGCCCAAGGTTAAGGTCTCATCTCTAGCAAGGAAGAGCAGTGAGAGTGGGACCAAAAAATTGGGGAAACACAAAGCCGATGATGAAGAAGAAGCTGGAAATTGCGAGAGTGGGACTGAAAAATCGGAGAATGGTGAGGTTGAAGGTGAAGAATCTGGAGATTGTGAGGGCGAGAACAAGAGTGTGGATGTGAAGGAACGTGATATGAGTGTGTATGCTCCTTCCGGAGCTAAGGTTGATGGTAAAGGCAAAAGCTATGTTGCCAAGTTGAAGGAGACGCTCAGACTTTTCAATCTGCACTACCTTCACTTTGTTCAGGAAGAGGAGAAGAGATGCAGGAAGCTGGAGAATGAGAGTGAATGCCGTGATGATCTAAAGAAACCTTCCAAACGAGTGGATAAGAAGGCAATTTCTGAGAATGGGAATGGAAGTCTTGGTGTCCCTAAGAAGCAGTCCAAGAGACCTGATCTGAAGGCACTTTCACAGATGTCGACCAACAACGAAATTCTATACCCTGAAAAAACAATTGGTCATCTACCGGGTATTGAGGTCGGGCAACAGTTTTTCTCTCGAGCTGAAATGGTGGTTGTAGGGTTTCATAGCCACTGGTTGAATGGAATTGATATCATTGGAAAATCTAAAGGAAAGGACAAATTCAAGGGCTATACCTTACCAATTGCAGTAGCGATCGTGTTGTCCGGTCAATATGAAGATGATGTTGATAACTCAGATGAAATTGTGTACACTGGCCAAGGTGGAAATGACTTACTTGGTAATAAACGTCAAATCCAAGATCAAGTAATGCGTATGGGTAATTTGGCTCTTAAGAATAATATGGAGCAGTTCGTTCCAGTCAGAGTCATCCGTGGTCATAAATGTGACACTAGCTATACTAAGAAAGTTTATACATATGATGGATTGTACCAGGTTCACCATTATTGGGCAGAGAAGGGTGTAGCTGGGTTTACCGTATTTAAGTACCGTCTGAAGCGTCTTCCAGGGCAGCCTAAATTGATCAGTAATCAGGTTTTATATACTAATGGGAAAGGGTCTAAAGCTCAGTCTGAATTACCTGGGTTGGTGTGCAAGGACATTTGCAATGGTCTAGAAAATATAAAAGTTCCAGTTACCAATATAGTTGATATTCCTCCTGTAGCACCTGAAGGCCTTACATATATCACAACTACTGAAGTTGCAAAAGGTGTGAAGATTCCACCACGTGCTCATGGGTGCAATTGCCAGGGAAACTGTACCAATTCAAAGACTTGTTCCTGTGCTCAACTCAATGGTGGTGACTTCCCTTACGTTAGCAAAGATGGTGGAAGATTGGTTGAAGCAAAGGCTGTTGTGTTTGAGTGTGGTCCACAATGTGGCTGTGGACCAAGTTGTGTGAATCGTGCATCTCAACGGGGAATGAAGTATCGACTTGAGGTGTTTCGGACACATGACAAAGGCTGGGCCGTTAGGTCTTGGGACTTTATTCCTTCTGGTGCACCAGTATGTGAATACATTGCAGTTCTTAGGAGGAATGATGAAATAGACAATATCTCAGAGAAGGAGAATGAGTATGTATTTGAAATTGATTGCTGGCAGACAATGAATGGAATTGGGGGAAGACAGAAACGAATGGGGAATGTGGCTATTCCAAATAGTGATGTCATATCAGAAAGCGATCCAGAGTATTGCTATGATGCAGGTTCACGCGGCAATGTAGCTAGATATATTAATCATAGTTGTGAGCCGAACCTCTTTGTACAGTGTGTTTTGAGGGAGCATCATGATGTTAGGCTTGCTAGAATTGTGTTATTTGCTGCAGATAACATATCTCCATTGCAGGAACTTTCATATGACTATGGATATGAACTTGACAGCGTGGTTGGTCCCGATGGAAAAATAAAGAAGTTATTTTGCCGTTGTGGTGCAGCAGGCTGTAGAAAGCGTTTGTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

694

Amino Acids

77.19

Weight (kDa)

8.67

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SAD_SRA	PF02182	221 - 380	3.5e-52	SAD/SRA domain
Pre-SET	PF05033	412 - 511	1.7e-17	Pre-SET motif
SET	PF00856	530 - 664	7.2e-17	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1820
AccB7I	CCANNNNNTGG	1 cut(s)	1505
AccI	GTMKAC	1 cut(s)	626
AccII	CGCG	1 cut(s)	1839
AccIII	TCCGGA	1 cut(s)	359
AciI	CCGC	1 cut(s)	1839
AclWI	GGATC	1 cut(s)	1802
AcoI	YGGCCR	1 cut(s)	883
AcsI	RAATTY	2 cut(s)	639, 788
AcuI	CTGAAG	5 cut(s)	35, 626, 1142, 1317, 1344
AcvI	CACGTG	1 cut(s)	1355
AdeI	CACNNNGTG	2 cut(s)	1355, 1505
AfaI	GTAC	8 cut(s)	56, 82, 878, 1058, 1115, 1387, 1890, 2081
AfiI	CCNNNNNNNGG	3 cut(s)	77, 1075, 1505
AflII	CTTAAG	1 cut(s)	959
AgsI	TTSAA	8 cut(s)	278, 406, 427, 748, 793, 1395, 1469, 1712
AjnI	CCWGG	4 cut(s)	1059, 1132, 1207, 1374
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AluBI	AGCT	9 cut(s)	230, 365, 390, 478, 710, 1023, 1094, 1193, 1850
AluI	AGCT	9 cut(s)	230, 365, 390, 478, 710, 1023, 1094, 1193, 1850
Alw21I	GWGCWC	3 cut(s)	1360, 1414, 1630
Alw26I	GTCTC	3 cut(s)	157, 404, 589
Alw44I	GTGCAC	1 cut(s)	1626
AlwI	GGATC	1 cut(s)	1802
Ama87I	CYCGRG	1 cut(s)	705
Aor13HI	TCCGGA	1 cut(s)	359
AoxI	GGCC	4 cut(s)	105, 883, 1300, 1593
ApaLI	GTGCAC	1 cut(s)	1626
ApeKI	GCWGC	4 cut(s)	5, 1138, 1946, 2057
ApoI	RAATTY	2 cut(s)	639, 788
AseI	ATTAAT	1 cut(s)	1860
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	1 cut(s)	33
AspS9I	GGNCC	5 cut(s)	186, 1496, 1514, 1593, 2015
AsuC2I	CCSGG	3 cut(s)	35, 46, 675
AsuHPI	GGTGA	5 cut(s)	49, 281, 293, 1058, 1439
AvaI	CYCGRG	1 cut(s)	705
AvaII	GGWCC	4 cut(s)	186, 1496, 1514, 2015
BaeGI	GKGCMC	1 cut(s)	1630
BalI	TGGCCA	1 cut(s)	885
BanII	GRGCYC	1 cut(s)	44
BbrPI	CACGTG	1 cut(s)	1355
BbsI	GAAGAC	2 cut(s)	1121, 1756
Bbv12I	GWGCWC	3 cut(s)	1360, 1414, 1630
BbvI	GCAGC	3 cut(s)	1150, 1933, 2069
BccI	CCATC	4 cut(s)	368, 1043, 1445, 2015
BceAI	ACGGC	3 cut(s)	483, 1580, 2031
BciT130I	CCWGG	4 cut(s)	1061, 1134, 1209, 1376
BclI	TGATCA	1 cut(s)	1149
BcnI	CCSGG	3 cut(s)	35, 46, 675
BcoDI	GTCTC	3 cut(s)	157, 404, 589
BfaI	CTAG	7 cut(s)	84, 161, 1020, 1241, 1851, 1929, 2083
BfmI	CTRYAG	3 cut(s)	1287, 1947, 2065
BfoI	RGCGCY	1 cut(s)	34
BfrI	CTTAAG	1 cut(s)	959
BfuAI	ACCTGC	1 cut(s)	1820
BisI	GCNGC	5 cut(s)	6, 1139, 1840, 1947, 2058
BlpI	GCTNAGC	1 cut(s)	60
BlsI	GCNGC	5 cut(s)	7, 1140, 1841, 1948, 2059
Bme1390I	CCNGG	7 cut(s)	35, 46, 675, 1061, 1134, 1209, 1376
Bme18I	GGWCC	4 cut(s)	186, 1496, 1514, 2015
BmeT110I	CYCGRG	1 cut(s)	705
BmgT120I	GGNCC	5 cut(s)	186, 1496, 1514, 1593, 2015
BmiI	GGNNCC	2 cut(s)	187, 2017
BmrFI	CCNGG	7 cut(s)	35, 46, 675, 1061, 1134, 1209, 1376
BmsI	GCATC	4 cut(s)	458, 1544, 1816, 1918
BpiI	GAAGAC	2 cut(s)	1121, 1756
BpmI	CTGGAG	3 cut(s)	47, 312, 500
Bpu10I	CCTNAGC	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	1583
BpuMI	CCSGG	3 cut(s)	35, 46, 675
BsaAI	YACGTR	1 cut(s)	1355
BsaI	GGTCTC	2 cut(s)	157, 589
BsaJI	CCNNGG	7 cut(s)	44, 141, 886, 1000, 1133, 1208, 1375
BsaWI	WCCGGW	2 cut(s)	359, 833
BsaXI	ACNNNNNCTCC	4 cut(s)	354, 384, 1685, 1715
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 1075, 1505
Bse118I	RCCGGY	1 cut(s)	107
Bse1I	ACTGG	5 cut(s)	746, 886, 986, 1259, 1631
Bse3DI	GCAATG	4 cut(s)	1240, 1644, 1849, 1964
BseAI	TCCGGA	1 cut(s)	359
BseBI	CCWGG	4 cut(s)	1061, 1134, 1209, 1376
BseDI	CCNNGG	7 cut(s)	44, 141, 886, 1000, 1133, 1208, 1375
BseGI	GGATG	2 cut(s)	328, 996
BseLI	CCNNNNNNNGG	3 cut(s)	77, 1075, 1505
BseMI	GCAATG	4 cut(s)	1240, 1644, 1849, 1964
BseMII	CTCAG	6 cut(s)	74, 430, 540, 876, 1208, 1698
BseNI	ACTGG	5 cut(s)	746, 886, 986, 1259, 1631
BseRI	GAGGAG	1 cut(s)	473
BseSI	GKGCMC	1 cut(s)	1630
BseXI	GCAGC	3 cut(s)	1150, 1933, 2069
BseYI	CCCAGC	2 cut(s)	1094, 1590
BsgI	GTGCAG	2 cut(s)	416, 2076
Bsh1236I	CGCG	1 cut(s)	1839
Bsh1285I	CGRYCG	2 cut(s)	112, 825
BshFI	GGCC	4 cut(s)	107, 885, 1302, 1595
BsiEI	CGRYCG	2 cut(s)	112, 825
BsiHKAI	GWGCWC	3 cut(s)	1360, 1414, 1630
BsiHKCI	CYCGRG	1 cut(s)	705
BsiSI	CCGG	6 cut(s)	34, 46, 108, 360, 674, 834
BslFI	GGGAC	5 cut(s)	199, 262, 560, 1622, 2001
BslI	CCNNNNNNNGG	3 cut(s)	77, 1075, 1505
BsmAI	GTCTC	3 cut(s)	157, 404, 589
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	5 cut(s)	199, 262, 560, 1622, 2001
BsmI	GAATGC	1 cut(s)	500
BsnI	GGCC	4 cut(s)	107, 885, 1302, 1595
Bso31I	GGTCTC	2 cut(s)	157, 589
BsoBI	CYCGRG	1 cut(s)	705
Bsp1286I	GDGCHC	4 cut(s)	44, 1360, 1414, 1630
Bsp13I	TCCGGA	1 cut(s)	359
Bsp1407I	TGTACA	2 cut(s)	876, 1888
Bsp143I	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
Bsp1720I	GCTNAGC	1 cut(s)	60
BspACI	CCGC	1 cut(s)	1839
BspANI	GGCC	4 cut(s)	107, 885, 1302, 1595
BspCNI	CTCAG	6 cut(s)	73, 429, 541, 875, 1207, 1697
BspEI	TCCGGA	1 cut(s)	359
BspFNI	CGCG	1 cut(s)	1839
BspHI	TCATGA	1 cut(s)	1912
BspLI	GGNNCC	2 cut(s)	187, 2017
BspMAI	CTGCAG	1 cut(s)	1951
BspMI	ACCTGC	1 cut(s)	1820
BspPI	GGATC	1 cut(s)	1802
BspQI	GCTCTTC	1 cut(s)	164
BspTI	CTTAAG	1 cut(s)	959
BspTNI	GGTCTC	2 cut(s)	157, 589
BsrDI	GCAATG	4 cut(s)	1240, 1644, 1849, 1964
BsrFI	RCCGGY	1 cut(s)	107
BsrGI	TGTACA	2 cut(s)	876, 1888
BsrI	ACTGG	5 cut(s)	746, 886, 986, 1259, 1631
BssAI	RCCGGY	1 cut(s)	107
BssECI	CCNNGG	7 cut(s)	44, 141, 886, 1000, 1133, 1208, 1375
BssMI	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
BssT1I	CCWWGG	2 cut(s)	141, 886
Bst2UI	CCWGG	4 cut(s)	1061, 1134, 1209, 1376
Bst4CI	ACNGT	5 cut(s)	696, 1105, 1118, 1385, 1893
Bst6I	CTCTTC	4 cut(s)	83, 164, 450, 458
BstAFI	CTTAAG	1 cut(s)	959
BstAUI	TGTACA	2 cut(s)	876, 1888
BstBAI	YACGTR	1 cut(s)	1355
BstC8I	GCNNGC	3 cut(s)	1724, 1926, 2062
BstDSI	CCRYGG	1 cut(s)	1000
BstF5I	GGATG	2 cut(s)	328, 996
BstFNI	CGCG	1 cut(s)	1839
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	1 cut(s)	33
BstKTI	GATC	6 cut(s)	508, 604, 825, 931, 1152, 1810
BstMAI	GTCTC	3 cut(s)	157, 404, 589
BstMBI	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
BstMCI	CGRYCG	2 cut(s)	112, 825
BstMWI	GCNNNNNNNGC	1 cut(s)	39
BstNI	CCWGG	4 cut(s)	1061, 1134, 1209, 1376
BstSCI	CCNGG	7 cut(s)	33, 44, 673, 1059, 1132, 1207, 1374
BstSFI	CTRYAG	3 cut(s)	1287, 1947, 2065
BstSLI	GKGCMC	1 cut(s)	1630
BstUI	CGCG	1 cut(s)	1839
BstV1I	GCAGC	3 cut(s)	1150, 1933, 2069
BstV2I	GAAGAC	2 cut(s)	1121, 1756
BstXI	CCANNNNNNTGG	2 cut(s)	196, 529
BsuRI	GGCC	4 cut(s)	107, 885, 1302, 1595
BtgI	CCRYGG	1 cut(s)	1000
BtsCI	GGATG	2 cut(s)	328, 996
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	4 cut(s)	181, 739, 879, 1898
BveI	ACCTGC	1 cut(s)	1820
Cac8I	GCNNGC	3 cut(s)	1724, 1926, 2062
CciI	TCATGA	1 cut(s)	1912
CfoI	GCGC	1 cut(s)	33
Cfr10I	RCCGGY	1 cut(s)	107
Cfr13I	GGNCC	5 cut(s)	186, 1496, 1514, 1593, 2015
CseI	GACGC	3 cut(s)	109, 421, 1115
CsiI	ACCWGGT	1 cut(s)	1059
Csp6I	GTAC	8 cut(s)	55, 81, 877, 1057, 1114, 1386, 1889, 2080
CspCI	CAANNNNNGTGG	2 cut(s)	1435, 1470
CviAII	CATG	3 cut(s)	1361, 1580, 1913
CviQI	GTAC	8 cut(s)	55, 81, 877, 1057, 1114, 1386, 1889, 2080
DpnI	GATC	6 cut(s)	507, 603, 824, 930, 1151, 1809
DpnII	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
DraIII	CACNNNGTG	2 cut(s)	1355, 1505
EaeI	YGGCCR	1 cut(s)	883
Eam1104I	CTCTTC	4 cut(s)	83, 164, 450, 458
EarI	CTCTTC	4 cut(s)	83, 164, 450, 458
Eco130I	CCWWGG	2 cut(s)	141, 886
Eco147I	AGGCCT	1 cut(s)	1302
Eco24I	GRGCYC	1 cut(s)	44
Eco31I	GGTCTC	2 cut(s)	157, 589
Eco32I	GATATC	1 cut(s)	760
Eco47I	GGWCC	4 cut(s)	186, 1496, 1514, 2015
Eco57I	CTGAAG	5 cut(s)	35, 626, 1142, 1317, 1344
Eco72I	CACGTG	1 cut(s)	1355
Eco88I	CYCGRG	1 cut(s)	705
EcoRII	CCWGG	4 cut(s)	1059, 1132, 1207, 1374
EcoRV	GATATC	1 cut(s)	760
EcoT14I	CCWWGG	2 cut(s)	141, 886
EcoT38I	GRGCYC	1 cut(s)	44
ErhI	CCWWGG	2 cut(s)	141, 886
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	1364, 1583, 1916
FaqI	GGGAC	5 cut(s)	199, 262, 560, 1622, 2001
FatI	CATG	3 cut(s)	1360, 1579, 1912
FauNDI	CATATG	2 cut(s)	1045, 1981
FbaI	TGATCA	1 cut(s)	1149
FblI	GTMKAC	1 cut(s)	626
Fnu4HI	GCNGC	5 cut(s)	6, 1139, 1840, 1947, 2058
FokI	GGATG	2 cut(s)	335, 983
FriOI	GRGCYC	1 cut(s)	44
Fsp4HI	GCNGC	5 cut(s)	6, 1139, 1840, 1947, 2058
FspBI	CTAG	7 cut(s)	84, 161, 1020, 1241, 1851, 1929, 2083
GlaI	GCGC	1 cut(s)	32
GluI	GCNGC	5 cut(s)	6, 1139, 1840, 1947, 2058
GsaI	CCCAGC	2 cut(s)	1098, 1594
GsuI	CTGGAG	3 cut(s)	47, 312, 500
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	4 cut(s)	107, 885, 1302, 1595
HapII	CCGG	6 cut(s)	34, 46, 108, 360, 674, 834
HgaI	GACGC	3 cut(s)	109, 421, 1115
HhaI	GCGC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	1364, 1583, 1916
Hin6I	GCGC	1 cut(s)	31
HinP1I	GCGC	1 cut(s)	31
HincII	GTYRAC	1 cut(s)	627
HindII	GTYRAC	1 cut(s)	627
HinfI	GANTC	6 cut(s)	17, 98, 287, 993, 1345, 1528
HpaII	CCGG	6 cut(s)	34, 46, 108, 360, 674, 834
HphI	GGTGA	5 cut(s)	49, 281, 293, 1058, 1439
Hpy166II	GTNNAC	9 cut(s)	627, 877, 879, 1066, 1101, 1499, 1514, 1628, 1835
Hpy188III	TCNNGA	9 cut(s)	26, 291, 360, 452, 705, 1241, 1811, 1913, 2018
Hpy8I	GTNNAC	9 cut(s)	627, 877, 879, 1066, 1101, 1499, 1514, 1628, 1835
Hpy99I	CGWCG	1 cut(s)	125
HpyCH4III	ACNGT	5 cut(s)	696, 1105, 1118, 1385, 1893
HpyCH4IV	ACGT	4 cut(s)	334, 916, 1354, 1440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	39
HpySE526I	ACGT	4 cut(s)	334, 916, 1354, 1440
Hsp92II	CATG	3 cut(s)	1364, 1583, 1916
HspAI	GCGC	1 cut(s)	31
Kpn2I	TCCGGA	1 cut(s)	359
Ksp22I	TGATCA	1 cut(s)	1149
Kzo9I	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
LguI	GCTCTTC	1 cut(s)	164
LmnI	GCTCC	5 cut(s)	28, 358, 362, 973, 1906
Lsp1109I	GCAGC	3 cut(s)	1150, 1933, 2069
LweI	GCATC	4 cut(s)	458, 1544, 1816, 1918
MabI	ACCWGGT	1 cut(s)	1059
MaeI	CTAG	7 cut(s)	84, 161, 1020, 1241, 1851, 1929, 2083
MaeII	ACGT	4 cut(s)	334, 916, 1354, 1440
MaeIII	GTNAC	3 cut(s)	1013, 1261, 1427
MalI	GATC	6 cut(s)	507, 603, 824, 930, 1151, 1809
MboI	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
MfeI	CAATTG	3 cut(s)	660, 810, 1369
MhlI	GDGCHC	4 cut(s)	44, 1360, 1414, 1630
MlsI	TGGCCA	1 cut(s)	885
MluNI	TGGCCA	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	1002
Mox20I	TGGCCA	1 cut(s)	885
MroI	TCCGGA	1 cut(s)	359
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	885
MseI	TTAA	4 cut(s)	147, 960, 1110, 1860
MslI	CAYNNNNRTG	4 cut(s)	1011, 1633, 1869, 1914
Msp20I	TGGCCA	1 cut(s)	885
MspCI	CTTAAG	1 cut(s)	959
MspI	CCGG	6 cut(s)	34, 46, 108, 360, 674, 834
MspR9I	CCNGG	7 cut(s)	35, 46, 675, 1061, 1134, 1209, 1376
MunI	CAATTG	3 cut(s)	660, 810, 1369
Mva1269I	GAATGC	1 cut(s)	500
MvaI	CCWGG	4 cut(s)	1061, 1134, 1209, 1376
MvnI	CGCG	1 cut(s)	1839
MwoI	GCNNNNNNNGC	1 cut(s)	39
NciI	CCSGG	3 cut(s)	35, 46, 675
NdeI	CATATG	2 cut(s)	1045, 1981
NdeII	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
NlaIII	CATG	3 cut(s)	1364, 1583, 1916
NlaIV	GGNNCC	2 cut(s)	187, 2017
NmuCI	GTSAC	2 cut(s)	1013, 1427
PaeR7I	CTCGAG	1 cut(s)	705
PagI	TCATGA	1 cut(s)	1912
PceI	AGGCCT	1 cut(s)	1302
PciSI	GCTCTTC	1 cut(s)	164
PctI	GAATGC	1 cut(s)	500
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	5 cut(s)	17, 98, 287, 1345, 1528
PflMI	CCANNNNNTGG	1 cut(s)	1505
PkrI	GCNGC	5 cut(s)	7, 1140, 1841, 1948, 2059
Ple19I	CGATCG	1 cut(s)	825
PleI	GAGTC	1 cut(s)	1001
PmaCI	CACGTG	1 cut(s)	1355
PmlI	CACGTG	1 cut(s)	1355
PpsI	GAGTC	1 cut(s)	1001
Ppu21I	YACGTR	1 cut(s)	1355
PshBI	ATTAAT	1 cut(s)	1860
Psp6I	CCWGG	4 cut(s)	1059, 1132, 1207, 1374
PspCI	CACGTG	1 cut(s)	1355
PspFI	CCCAGC	2 cut(s)	1094, 1590
PspGI	CCWGG	4 cut(s)	1059, 1132, 1207, 1374
PspN4I	GGNNCC	2 cut(s)	187, 2017
PspPI	GGNCC	5 cut(s)	186, 1496, 1514, 1593, 2015
PstI	CTGCAG	1 cut(s)	1951
PvuI	CGATCG	1 cut(s)	825
RsaI	GTAC	8 cut(s)	56, 82, 878, 1058, 1115, 1387, 1890, 2081
RsaNI	GTAC	8 cut(s)	55, 81, 877, 1057, 1114, 1386, 1889, 2080
RseI	CAYNNNNRTG	4 cut(s)	1011, 1633, 1869, 1914
SalI	GTCGAC	1 cut(s)	625
SapI	GCTCTTC	1 cut(s)	164
SaqAI	TTAA	4 cut(s)	147, 960, 1110, 1860
SatI	GCNGC	5 cut(s)	6, 1139, 1840, 1947, 2058
Sau3AI	GATC	6 cut(s)	505, 601, 822, 928, 1149, 1807
Sau96I	GGNCC	5 cut(s)	186, 1496, 1514, 1593, 2015
SchI	GAGTC	1 cut(s)	1002
ScrFI	CCNGG	7 cut(s)	35, 46, 675, 1061, 1134, 1209, 1376
SduI	GDGCHC	4 cut(s)	44, 1360, 1414, 1630
SexAI	ACCWGGT	1 cut(s)	1059
SfaNI	GCATC	4 cut(s)	458, 1544, 1816, 1918
SfcI	CTRYAG	3 cut(s)	1287, 1947, 2065
Sfr274I	CTCGAG	1 cut(s)	705
SinI	GGWCC	4 cut(s)	186, 1496, 1514, 2015
SlaI	CTCGAG	1 cut(s)	705
SmiMI	CAYNNNNRTG	4 cut(s)	1011, 1633, 1869, 1914
SmlI	CTYRAG	3 cut(s)	705, 959, 1562
SmoI	CTYRAG	3 cut(s)	705, 959, 1562
SseBI	AGGCCT	1 cut(s)	1302
SsiI	CCGC	1 cut(s)	1839
SspMI	CTAG	7 cut(s)	84, 161, 1020, 1241, 1851, 1929, 2083
StuI	AGGCCT	1 cut(s)	1302
StyD4I	CCNGG	7 cut(s)	33, 44, 673, 1059, 1132, 1207, 1374
StyI	CCWWGG	2 cut(s)	141, 886
TaaI	ACNGT	5 cut(s)	696, 1105, 1118, 1385, 1893
TaiI	ACGT	4 cut(s)	337, 919, 1357, 1443
TaqI	TCGA	4 cut(s)	112, 626, 706, 1558
TatI	WGTACW	3 cut(s)	876, 1888, 2079
TauI	GCSGC	1 cut(s)	1842
TfiI	GAWTC	5 cut(s)	17, 98, 287, 1345, 1528
Tru1I	TTAA	4 cut(s)	147, 960, 1110, 1860
Tru9I	TTAA	4 cut(s)	147, 960, 1110, 1860
TscAI	CASTG	4 cut(s)	181, 746, 886, 1898
TseFI	GTSAC	2 cut(s)	1013, 1427
TseI	GCWGC	4 cut(s)	5, 1138, 1946, 2057
Tsp45I	GTSAC	2 cut(s)	1013, 1427
TspDTI	ATGAA	9 cut(s)	234, 722, 858, 882, 1565, 1683, 1748, 1968, 2010
TspGWI	ACGGA	2 cut(s)	110, 989
TspRI	CASTG	4 cut(s)	181, 746, 886, 1898
Van91I	CCANNNNNTGG	1 cut(s)	1505
Vha464I	CTTAAG	1 cut(s)	959
VneI	GTGCAC	1 cut(s)	1626
VpaK11BI	GGWCC	4 cut(s)	186, 1496, 1514, 2015
VspI	ATTAAT	1 cut(s)	1860
XapI	RAATTY	2 cut(s)	639, 788
XbaI	TCTAGA	1 cut(s)	1240
XcmI	CCANNNNNNNNNTGG	1 cut(s)	746
XhoI	CTCGAG	1 cut(s)	705
XmiI	GTMKAC	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	7 cut(s)	84, 161, 1020, 1241, 1851, 1929, 2083

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.