Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8243205.1

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 519

Gene Structure 519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8243205.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

aaacgaatggggaatgtggctattccaaatagtgatgtcatatcagaaagcgatccagagtattgctatgatgcgggttcacgcggcaatgtagctagatatattaatcatagttgtgagccgaacctctttgtacagtgtgttttgagggagcatcatgatgttaggcttgctagaattgtgttatttgctgcagataacatacctccattgcaggaactttcatatgactatggatatgaacttgacagcgtggttggtcccgatggaaaaataaagaagttattttgccgttgtggtgcagcaggctgtagaaagcgtttgtactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

109

Amino Acids

12.25

Weight (kDa)

6.98

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	2 cut(s)	74, 84
AclWI	GGATC	1 cut(s)	47
AfaI	GTAC	2 cut(s)	135, 326
AluBI	AGCT	1 cut(s)	95
AluI	AGCT	1 cut(s)	95
AlwI	GGATC	1 cut(s)	47
ApeKI	GCWGC	2 cut(s)	191, 302
AseI	ATTAAT	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	260
AvaII	GGWCC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	178, 314
BccI	CCATC	1 cut(s)	260
BceAI	ACGGC	1 cut(s)	276
BfaI	CTAG	3 cut(s)	96, 174, 328
BfmI	CTRYAG	2 cut(s)	192, 310
BisI	GCNGC	3 cut(s)	85, 192, 303
BlsI	GCNGC	3 cut(s)	86, 193, 304
Bme18I	GGWCC	1 cut(s)	260
BmgT120I	GGNCC	1 cut(s)	260
BmiI	GGNNCC	1 cut(s)	262
BmsI	GCATC	2 cut(s)	61, 163
Bse3DI	GCAATG	2 cut(s)	94, 209
BseMI	GCAATG	2 cut(s)	94, 209
BseXI	GCAGC	2 cut(s)	178, 314
BsgI	GTGCAG	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	84
BslFI	GGGAC	1 cut(s)	246
BsmFI	GGGAC	1 cut(s)	246
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	52
BspACI	CCGC	2 cut(s)	74, 84
BspFNI	CGCG	1 cut(s)	84
BspHI	TCATGA	1 cut(s)	157
BspLI	GGNNCC	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	1 cut(s)	47
BsrDI	GCAATG	2 cut(s)	94, 209
BsrGI	TGTACA	1 cut(s)	133
BssMI	GATC	1 cut(s)	52
Bst4CI	ACNGT	1 cut(s)	138
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	171, 307
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	55
BstMBI	GATC	1 cut(s)	52
BstSFI	CTRYAG	2 cut(s)	192, 310
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	2 cut(s)	178, 314
BtsIMutI	CAGTG	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	171, 307
CciI	TCATGA	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	134, 325
CviAII	CATG	1 cut(s)	158
CviJI	RGCY	5 cut(s)	20, 95, 121, 169, 309
CviKI_1	RGCY	5 cut(s)	20, 95, 121, 169, 309
CviQI	GTAC	2 cut(s)	134, 325
DpnI	GATC	1 cut(s)	54
DpnII	GATC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	260
FaeI	CATG	1 cut(s)	161
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	157
FauI	CCCGC	1 cut(s)	67
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	3 cut(s)	85, 192, 303
Fsp4HI	GCNGC	3 cut(s)	85, 192, 303
FspBI	CTAG	3 cut(s)	96, 174, 328
GluI	GCNGC	3 cut(s)	85, 192, 303
Hin1II	CATG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	3 cut(s)	56, 158, 263
Hpy8I	GTNNAC	1 cut(s)	80
HpyCH4III	ACNGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	194, 214, 302
Hsp92II	CATG	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	151
LpnPI	CCDG	3 cut(s)	69, 200, 291
Lsp1109I	GCAGC	2 cut(s)	178, 314
LweI	GCATC	2 cut(s)	61, 163
MaeI	CTAG	3 cut(s)	96, 174, 328
MalI	GATC	1 cut(s)	54
MboI	GATC	1 cut(s)	52
MluCI	AATT	1 cut(s)	177
MnlI	CCTC	3 cut(s)	137, 141, 216
MseI	TTAA	1 cut(s)	105
MslI	CAYNNNNRTG	2 cut(s)	114, 159
MvnI	CGCG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	1 cut(s)	52
NlaIII	CATG	1 cut(s)	161
NlaIV	GGNNCC	1 cut(s)	262
PagI	TCATGA	1 cut(s)	157
PkrI	GCNGC	3 cut(s)	86, 193, 304
PshBI	ATTAAT	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	262
PspPI	GGNCC	1 cut(s)	260
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	135, 326
RsaNI	GTAC	2 cut(s)	134, 325
RseI	CAYNNNNRTG	2 cut(s)	114, 159
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	3 cut(s)	85, 192, 303
Sau3AI	GATC	1 cut(s)	52
Sau96I	GGNCC	1 cut(s)	260
SetI	ASST	3 cut(s)	97, 129, 208
SfaNI	GCATC	2 cut(s)	61, 163
SfcI	CTRYAG	2 cut(s)	192, 310
SinI	GGWCC	1 cut(s)	260
SmiMI	CAYNNNNRTG	2 cut(s)	114, 159
Sse9I	AATT	1 cut(s)	177
SsiI	CCGC	2 cut(s)	74, 84
SspMI	CTAG	3 cut(s)	96, 174, 328
TaaI	ACNGT	1 cut(s)	138
TasI	AATT	1 cut(s)	177
TatI	WGTACW	2 cut(s)	133, 324
TauI	GCSGC	1 cut(s)	87
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	1 cut(s)	143
TseI	GCWGC	2 cut(s)	191, 302
TspDTI	ATGAA	2 cut(s)	213, 255
TspRI	CASTG	1 cut(s)	143
VpaK11BI	GGWCC	1 cut(s)	260
VspI	ATTAAT	1 cut(s)	105
XspI	CTAG	3 cut(s)	96, 174, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.