Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8447061.1

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1419

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8447061.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

gtttctgttttaccttccagattaattgaagccaaggatgtagtgtttgaatgtgggccaaaatgtggttgtggaccttcttgtgtcaaccgtacttctcagagggggctcaagtaccgatttgaggttttccgaacgcccatgaaagggtgggcagttagatcttgggattttatacctgctggggcaccagtttgtgagtatgtaggaatacttcgcaggacagaagatgtggatagtgcctcggagaattattacatttttgacattgattgcttgcaaacaatgaaggggcttgatgggagggagaggcgatcacaagctgtatgcataccaacagttaattcactggagaggcctgatgatcagagatctgataatgtgccagagtactgcattgatgctggttctaatggaaatattgccagatttataaaccacagttgtgagcctaatctgtttgttcagtgtgtcttgagttcacaccatgacatcaaactagctcgagtaatgctgtttgcagcagacaacatacctcctttgcaggagctgacatatgactacggttacgcccttgatagtgtcttgggccctgatgggaaggtaaagaagatgttttgccactgtggtgcagcaggttgcaggaaacgcttgttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

219

Amino Acids

24.5

Weight (kDa)

6.99

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
Acc36I	ACCTGC	2 cut(s)	187, 626
AccB1I	GGYRCC	1 cut(s)	187
AccB7I	CCANNNNNTGG	1 cut(s)	65
AfaI	GTAC	3 cut(s)	94, 116, 392
AfiI	CCNNNNNNNGG	4 cut(s)	65, 124, 146, 147
AgsI	TTSAA	2 cut(s)	29, 50
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AleI	CACNNNNGTG	2 cut(s)	444, 627
AluBI	AGCT	3 cut(s)	323, 503, 550
AluI	AGCT	3 cut(s)	323, 503, 550
AlwNI	CAGNNNCTG	1 cut(s)	550
Ama87I	CYCGRG	1 cut(s)	504
AoxI	GGCC	3 cut(s)	56, 356, 589
ApaI	GGGCCC	1 cut(s)	593
ApeKI	GCWGC	2 cut(s)	521, 632
AseI	ATTAAT	1 cut(s)	23
AspS9I	GGNCC	4 cut(s)	56, 74, 589, 590
AvaI	CYCGRG	1 cut(s)	504
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	2 cut(s)	190, 593
BanI	GGYRCC	1 cut(s)	187
BanII	GRGCYC	2 cut(s)	111, 593
BarI	GAAGNNNNNNTAC	2 cut(s)	198, 230
BbvI	GCAGC	2 cut(s)	533, 644
BccI	CCATC	2 cut(s)	293, 590
BclI	TGATCA	1 cut(s)	364
BfaI	CTAG	2 cut(s)	500, 658
BfuAI	ACCTGC	2 cut(s)	187, 626
BglII	AGATCT	2 cut(s)	161, 371
BisI	GCNGC	2 cut(s)	522, 633
BlsI	GCNGC	2 cut(s)	523, 634
BmcAI	AGTACT	1 cut(s)	392
Bme18I	GGWCC	1 cut(s)	74
BmeT110I	CYCGRG	1 cut(s)	504
BmgT120I	GGNCC	4 cut(s)	56, 74, 589, 590
BmiI	GGNNCC	2 cut(s)	189, 591
BmsI	GCATC	1 cut(s)	391
BpmI	CTGGAG	1 cut(s)	371
BpuEI	CTTGAG	2 cut(s)	95, 496
BsaJI	CCNNGG	2 cut(s)	33, 243
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 124, 146, 147
Bse1I	ACTGG	2 cut(s)	191, 354
BseDI	CCNNGG	2 cut(s)	33, 243
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	4 cut(s)	65, 124, 146, 147
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	2 cut(s)	191, 354
BseSI	GKGCMC	2 cut(s)	190, 593
BseXI	GCAGC	2 cut(s)	533, 644
BseYI	CCCAGC	1 cut(s)	182
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	3 cut(s)	58, 358, 591
BshNI	GGYRCC	1 cut(s)	187
BsiHKCI	CYCGRG	1 cut(s)	504
BslI	CCNNNNNNNGG	4 cut(s)	65, 124, 146, 147
BsnI	GGCC	3 cut(s)	58, 358, 591
BsoBI	CYCGRG	1 cut(s)	504
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	3 cut(s)	111, 190, 593
Bsp143I	GATC	4 cut(s)	161, 314, 364, 371
BspANI	GGCC	3 cut(s)	58, 358, 591
BspCNI	CTCAG	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	189, 591
BspMI	ACCTGC	2 cut(s)	187, 626
BspT107I	GGYRCC	1 cut(s)	187
BsrI	ACTGG	2 cut(s)	191, 354
BssECI	CCNNGG	2 cut(s)	33, 243
BssMI	GATC	4 cut(s)	161, 314, 364, 371
BssT1I	CCWWGG	1 cut(s)	33
Bst4CI	ACNGT	5 cut(s)	92, 340, 443, 566, 626
BstC8I	GCNNGC	1 cut(s)	278
BstDEI	CTNAG	1 cut(s)	99
BstF5I	GGATG	1 cut(s)	43
BstKTI	GATC	4 cut(s)	164, 317, 367, 374
BstMBI	GATC	4 cut(s)	161, 314, 364, 371
BstMWI	GCNNNNNNNGC	1 cut(s)	648
BstSLI	GKGCMC	2 cut(s)	190, 593
BstV1I	GCAGC	2 cut(s)	533, 644
BstX2I	RGATCY	2 cut(s)	161, 371
BstYI	RGATCY	2 cut(s)	161, 371
BsuRI	GGCC	3 cut(s)	58, 358, 591
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	347, 473, 622
BveI	ACCTGC	2 cut(s)	187, 626
Cac8I	GCNNGC	1 cut(s)	278
CaiI	CAGNNNCTG	1 cut(s)	550
Cfr13I	GGNCC	4 cut(s)	56, 74, 589, 590
Csp6I	GTAC	3 cut(s)	93, 115, 391
CviAII	CATG	2 cut(s)	142, 488
CviQI	GTAC	3 cut(s)	93, 115, 391
DdeI	CTNAG	1 cut(s)	99
DpnI	GATC	4 cut(s)	163, 316, 366, 373
DpnII	GATC	4 cut(s)	161, 314, 364, 371
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	358
Eco24I	GRGCYC	2 cut(s)	111, 593
Eco47I	GGWCC	1 cut(s)	74
Eco88I	CYCGRG	1 cut(s)	504
EcoO109I	RGGNCCY	1 cut(s)	590
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	332
EcoT38I	GRGCYC	2 cut(s)	111, 593
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	145, 491
FatI	CATG	2 cut(s)	141, 487
FauNDI	CATATG	1 cut(s)	556
FbaI	TGATCA	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	522, 633
FokI	GGATG	1 cut(s)	50
FriOI	GRGCYC	2 cut(s)	111, 593
Fsp4HI	GCNGC	2 cut(s)	522, 633
FspBI	CTAG	2 cut(s)	500, 658
GluI	GCNGC	2 cut(s)	522, 633
GsaI	CCCAGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	371
HaeIII	GGCC	3 cut(s)	58, 358, 591
Hin1II	CATG	2 cut(s)	145, 491
HincII	GTYRAC	1 cut(s)	88
HindII	GTYRAC	1 cut(s)	88
Hpy166II	GTNNAC	3 cut(s)	74, 88, 482
Hpy188I	TCNGA	5 cut(s)	102, 134, 247, 369, 376
Hpy188III	TCNNGA	2 cut(s)	18, 475
Hpy8I	GTNNAC	3 cut(s)	74, 88, 482
HpyAV	CCTTC	4 cut(s)	24, 87, 283, 595
HpyCH4III	ACNGT	5 cut(s)	92, 340, 443, 566, 626
HpyCH4V	TGCA	7 cut(s)	280, 330, 396, 521, 544, 632, 642
HpyF10VI	GCNNNNNNNGC	1 cut(s)	648
HpyF3I	CTNAG	1 cut(s)	99
Hsp92II	CATG	2 cut(s)	145, 491
Ksp22I	TGATCA	1 cut(s)	364
Kzo9I	GATC	4 cut(s)	161, 314, 364, 371
LmnI	GCTCC	1 cut(s)	547
Lsp1109I	GCAGC	2 cut(s)	533, 644
LweI	GCATC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	500, 658
MaeIII	GTNAC	1 cut(s)	566
MalI	GATC	4 cut(s)	163, 316, 366, 373
MboI	GATC	4 cut(s)	161, 314, 364, 371
MboII	GAAGA	2 cut(s)	239, 622
MflI	RGATCY	2 cut(s)	161, 371
MhlI	GDGCHC	3 cut(s)	111, 190, 593
MluCI	AATT	3 cut(s)	24, 250, 343
MnlI	CCTC	7 cut(s)	96, 118, 253, 297, 303, 348, 546
Mph1103I	ATGCAT	1 cut(s)	332
MseI	TTAA	2 cut(s)	23, 342
MslI	CAYNNNNRTG	2 cut(s)	444, 627
MwoI	GCNNNNNNNGC	1 cut(s)	648
NdeI	CATATG	1 cut(s)	556
NdeII	GATC	4 cut(s)	161, 314, 364, 371
NlaIII	CATG	2 cut(s)	145, 491
NlaIV	GGNNCC	2 cut(s)	189, 591
NsiI	ATGCAT	1 cut(s)	332
OliI	CACNNNNGTG	2 cut(s)	444, 627
PaeR7I	CTCGAG	1 cut(s)	504
PceI	AGGCCT	1 cut(s)	358
PflMI	CCANNNNNTGG	1 cut(s)	65
PkrI	GCNGC	2 cut(s)	523, 634
PshBI	ATTAAT	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	434
PspFI	CCCAGC	1 cut(s)	182
PspN4I	GGNNCC	2 cut(s)	189, 591
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	4 cut(s)	56, 74, 589, 590
PspXI	VCTCGAGB	1 cut(s)	504
PstNI	CAGNNNCTG	1 cut(s)	550
PsuI	RGATCY	2 cut(s)	161, 371
RsaI	GTAC	3 cut(s)	94, 116, 392
RsaNI	GTAC	3 cut(s)	93, 115, 391
RseI	CAYNNNNRTG	2 cut(s)	444, 627
SaqAI	TTAA	2 cut(s)	23, 342
SatI	GCNGC	2 cut(s)	522, 633
Sau3AI	GATC	4 cut(s)	161, 314, 364, 371
Sau96I	GGNCC	4 cut(s)	56, 74, 589, 590
ScaI	AGTACT	1 cut(s)	392
SduI	GDGCHC	3 cut(s)	111, 190, 593
SfaNI	GCATC	1 cut(s)	391
Sfr274I	CTCGAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	74
SlaI	CTCGAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	444, 627
SmlI	CTYRAG	3 cut(s)	110, 475, 504
SmoI	CTYRAG	3 cut(s)	110, 475, 504
Sse9I	AATT	3 cut(s)	24, 250, 343
SseBI	AGGCCT	1 cut(s)	358
SspI	AATATT	1 cut(s)	421
SspMI	CTAG	2 cut(s)	500, 658
StuI	AGGCCT	1 cut(s)	358
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	5 cut(s)	92, 340, 443, 566, 626
TaqI	TCGA	1 cut(s)	505
TasI	AATT	3 cut(s)	24, 250, 343
TatI	WGTACW	1 cut(s)	390
Tru1I	TTAA	2 cut(s)	23, 342
Tru9I	TTAA	2 cut(s)	23, 342
TscAI	CASTG	3 cut(s)	354, 473, 629
TseI	GCWGC	2 cut(s)	521, 632
TspDTI	ATGAA	2 cut(s)	158, 302
TspRI	CASTG	3 cut(s)	354, 473, 629
Van91I	CCANNNNNTGG	1 cut(s)	65
VpaK11BI	GGWCC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	23
XhoI	CTCGAG	1 cut(s)	504
XspI	CTAG	2 cut(s)	500, 658
ZrmI	AGTACT	1 cut(s)	392
Zsp2I	ATGCAT	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.