Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

39549493 .. 39556395

Gene Structure 6903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGCTTGTAAAACTAGGAGTGAATTCTGGGTTTGGTGCAAAGAGTTGTATTTGTATGCTGGCTTCTTCAGCTGTGTTGAGAAGGCAACAGTTGGTGATAAGGTGTCTTGGAGGTTACAGTGATCATAACATTAACACTAATCAGAAACCAATGCAAGGAGTTAGGTTCAGTAGTGGATCTTCTTTGGAGGCTGATGCTGAGAATGTTCTGAGAGCAATCACACCGACCCTTGATCCAAATAGACACAAGGGTCAGGCTGGAAAGATAGCTGTTATTGGTGGGTGCCGTGAGTACACTGGTGCTCCATATTTTGCTGCTATCTCAGCATTAAAAATTGGTGCGGATCTGTCCCATGTTTTCTGTACAAGAGATGCTGCTTCAGTTATAAAAAGCTACAGTCCTGAGTTGATCGTACACCCAATTTTAGAAGAGTCATACAGTGTTAGGGATGAGGACAAGAGCTTTATCTTAGAAAAGGTTCTTGGTGAAGTTGATAAGTGGATGGAAAGATTCGATTGTCTTGTAATTGGTCCGGGCCTTGGAAGGGACCCATTTCTTCTGGATTGTGTTAGCAAAATCATAAAGCATGCAAGACAGTCCAATGTTCCAATTGTCATAGATGGGGATGGACTCTTTCTTATTACAAACTGTCTTGATCTTGTAAGTGGATATCACTTGGCTGTCCTGACTCCAAATGTAAATGAATACAAGCGACTTGTACAAAAAGTTTTGAGTTGTGAAGTAAATGATGAAGATGCACGTGAGCAATTACTATCTCTTGCAAAAAGGATTGGTGGTGTCACTATACTTAGGAAAGGAAAAGCTGACCTCATTAGTGATGGTGAGACAGTTGAATCAGTGAGCATATATGGTTCTCCTCGAAGATGTGGTGGACAGGGAGATATACTTTCTGGAAGCGTTGCTGTATTTCTTTCATGGGCCCGTCAAATTGTCACAGATGAGAATCTGAGTATCAGTTCCCGAAACCCCACAATGTTAGGTTGCATTGCTGGCTCCACTTTAATGAGGAAGGCTGCATCCCTCGCTTTTGAGAATAAGAAAAGGTCAACTCTTACTACTGACATCATAGAATGCTTGGGAAGAAGTTTGCAGGATATTTGTCCAGTTCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

377

Amino Acids

40.85

Weight (kDa)

7.9

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Carb_kinase	PF01256	90 - 365	3.9e-48	NAD(P)H-hydrate dehydratase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	386
AasI	GACNNNNNNGTC	1 cut(s)	249
AccB1I	GGYRCC	1 cut(s)	282
AciI	CCGC	1 cut(s)	341
AclWI	GGATC	3 cut(s)	184, 227, 351
AcsI	RAATTY	1 cut(s)	22
AcuI	CTGAAG	2 cut(s)	51, 363
AcvI	CACGTG	1 cut(s)	761
AfaI	GTAC	4 cut(s)	293, 364, 414, 720
AfiI	CCNNNNNNNGG	3 cut(s)	155, 539, 544
AgsI	TTSAA	1 cut(s)	854
AjuI	GAANNNNNNNTTGG	2 cut(s)	465, 497
AluBI	AGCT	5 cut(s)	71, 269, 393, 462, 824
AluI	AGCT	5 cut(s)	71, 269, 393, 462, 824
Alw21I	GWGCWC	1 cut(s)	304
Alw26I	GTCTC	1 cut(s)	839
AlwI	GGATC	3 cut(s)	184, 227, 351
AoxI	GGCC	2 cut(s)	535, 939
ApaI	GGGCCC	1 cut(s)	943
ApeKI	GCWGC	3 cut(s)	314, 374, 1034
ApoI	RAATTY	1 cut(s)	22
Asp700I	GAANNNNTTC	1 cut(s)	477
AspS9I	GGNCC	5 cut(s)	530, 535, 547, 939, 940
AsuC2I	CCSGG	1 cut(s)	534
AsuHPI	GGTGA	3 cut(s)	106, 497, 854
AvaII	GGWCC	2 cut(s)	530, 547
BaeGI	GKGCMC	1 cut(s)	943
BanI	GGYRCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	943
BarI	GAAGNNNNNNTAC	4 cut(s)	46, 78, 163, 195
BbrPI	CACGTG	1 cut(s)	761
Bbv12I	GWGCWC	1 cut(s)	304
BbvI	GCAGC	3 cut(s)	301, 361, 1021
BccI	CCATC	4 cut(s)	496, 614, 620, 833
BceAI	ACGGC	1 cut(s)	270
BclI	TGATCA	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	839
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	394
BisI	GCNGC	3 cut(s)	315, 375, 1035
BlsI	GCNGC	3 cut(s)	316, 376, 1036
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	2 cut(s)	530, 547
BmgT120I	GGNCC	5 cut(s)	530, 535, 547, 939, 940
BmiI	GGNNCC	5 cut(s)	284, 548, 549, 941, 1015
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	4 cut(s)	184, 361, 745, 1046
BpuMI	CCSGG	1 cut(s)	534
BsaAI	YACGTR	1 cut(s)	761
BsaBI	GATNNNNATC	1 cut(s)	963
BsaJI	CCNNGG	1 cut(s)	538
BsaXI	ACNNNNNCTCC	2 cut(s)	286, 316
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 539, 544
Bse1I	ACTGG	2 cut(s)	301, 1124
Bse3DI	GCAATG	1 cut(s)	1005
Bse8I	GATNNNNATC	1 cut(s)	963
BseDI	CCNNGG	1 cut(s)	538
BseGI	GGATG	4 cut(s)	454, 507, 631, 1037
BseJI	GATNNNNATC	1 cut(s)	963
BseLI	CCNNNNNNNGG	3 cut(s)	155, 539, 544
BseMI	GCAATG	1 cut(s)	1005
BseMII	CTCAG	5 cut(s)	189, 200, 336, 393, 959
BseNI	ACTGG	2 cut(s)	301, 1124
BseRI	GAGGAG	1 cut(s)	867
BseSI	GKGCMC	1 cut(s)	943
BseXI	GCAGC	3 cut(s)	301, 361, 1021
BshFI	GGCC	2 cut(s)	537, 941
BshNI	GGYRCC	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	304
BsiSI	CCGG	1 cut(s)	533
BslFI	GGGAC	2 cut(s)	334, 560
BslI	CCNNNNNNNGG	3 cut(s)	155, 539, 544
BsmAI	GTCTC	1 cut(s)	839
BsmFI	GGGAC	2 cut(s)	334, 560
BsmI	GAATGC	1 cut(s)	1097
BsnI	GGCC	2 cut(s)	537, 941
Bsp120I	GGGCCC	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	304, 943
Bsp1407I	TGTACA	2 cut(s)	362, 718
Bsp143I	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
BspACI	CCGC	1 cut(s)	341
BspANI	GGCC	2 cut(s)	537, 941
BspCNI	CTCAG	5 cut(s)	190, 201, 335, 394, 960
BspLI	GGNNCC	5 cut(s)	284, 548, 549, 941, 1015
BspPI	GGATC	3 cut(s)	184, 227, 351
BspT107I	GGYRCC	1 cut(s)	282
BsrDI	GCAATG	1 cut(s)	1005
BsrGI	TGTACA	2 cut(s)	362, 718
BsrI	ACTGG	2 cut(s)	301, 1124
BssECI	CCNNGG	1 cut(s)	538
BssMI	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
BssT1I	CCWWGG	1 cut(s)	538
Bst4CI	ACNGT	7 cut(s)	90, 119, 398, 440, 597, 650, 850
Bst6I	CTCTTC	1 cut(s)	423
BstAUI	TGTACA	2 cut(s)	362, 718
BstBAI	YACGTR	1 cut(s)	761
BstC8I	GCNNGC	3 cut(s)	60, 588, 1012
BstDEI	CTNAG	7 cut(s)	198, 209, 322, 402, 469, 809, 968
BstF5I	GGATG	4 cut(s)	454, 507, 631, 1037
BstKTI	GATC	6 cut(s)	124, 179, 235, 346, 411, 658
BstMAI	GTCTC	1 cut(s)	839
BstMBI	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	68, 323, 1011, 1043
BstNSI	RCATGY	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	1 cut(s)	394
BstSLI	GKGCMC	1 cut(s)	943
BstV1I	GCAGC	3 cut(s)	301, 361, 1021
BstX2I	RGATCY	2 cut(s)	176, 343
BstYI	RGATCY	2 cut(s)	176, 343
BsuRI	GGCC	2 cut(s)	537, 941
BtsCI	GGATG	4 cut(s)	454, 507, 631, 1037
BtsIMutI	CAGTG	4 cut(s)	124, 294, 445, 864
Cac8I	GCNNGC	3 cut(s)	60, 588, 1012
Cfr13I	GGNCC	5 cut(s)	530, 535, 547, 939, 940
Csp6I	GTAC	4 cut(s)	292, 363, 413, 719
CviAII	CATG	3 cut(s)	353, 587, 936
CviQI	GTAC	4 cut(s)	292, 363, 413, 719
DdeI	CTNAG	7 cut(s)	198, 209, 322, 402, 469, 809, 968
DpnI	GATC	6 cut(s)	123, 178, 234, 345, 410, 657
DpnII	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
DrdI	GACNNNNNNGTC	1 cut(s)	249
DseDI	GACNNNNNNGTC	1 cut(s)	249
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
Eco130I	CCWWGG	1 cut(s)	538
Eco24I	GRGCYC	1 cut(s)	943
Eco32I	GATATC	1 cut(s)	671
Eco47I	GGWCC	2 cut(s)	530, 547
Eco57I	CTGAAG	2 cut(s)	51, 363
Eco72I	CACGTG	1 cut(s)	761
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	22
EcoRV	GATATC	1 cut(s)	671
EcoT14I	CCWWGG	1 cut(s)	538
EcoT38I	GRGCYC	1 cut(s)	943
ErhI	CCWWGG	1 cut(s)	538
FaeI	CATG	3 cut(s)	356, 590, 939
FaqI	GGGAC	2 cut(s)	334, 560
FatI	CATG	3 cut(s)	352, 586, 935
FbaI	TGATCA	1 cut(s)	121
Fnu4HI	GCNGC	3 cut(s)	315, 375, 1035
FokI	GGATG	4 cut(s)	461, 514, 638, 1024
FriOI	GRGCYC	1 cut(s)	943
Fsp4HI	GCNGC	3 cut(s)	315, 375, 1035
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	3 cut(s)	315, 375, 1035
HaeIII	GGCC	2 cut(s)	537, 941
HapII	CCGG	1 cut(s)	533
Hin1II	CATG	3 cut(s)	356, 590, 939
HincII	GTYRAC	1 cut(s)	1068
HindII	GTYRAC	1 cut(s)	1068
HinfI	GANTC	6 cut(s)	431, 510, 630, 688, 854, 964
HpaII	CCGG	1 cut(s)	533
HphI	GGTGA	3 cut(s)	106, 497, 854
Hpy166II	GTNNAC	4 cut(s)	294, 415, 893, 1068
Hpy188I	TCNGA	3 cut(s)	144, 210, 969
Hpy188III	TCNNGA	6 cut(s)	401, 560, 653, 685, 912, 981
Hpy8I	GTNNAC	4 cut(s)	294, 415, 893, 1068
HpyAV	CCTTC	3 cut(s)	75, 537, 1024
HpyCH4III	ACNGT	7 cut(s)	90, 119, 398, 440, 597, 650, 850
HpyCH4IV	ACGT	1 cut(s)	760
HpyCH4V	TGCA	8 cut(s)	38, 154, 590, 758, 782, 1005, 1037, 1111
HpyF10VI	GCNNNNNNNGC	4 cut(s)	68, 323, 1011, 1043
HpyF3I	CTNAG	7 cut(s)	198, 209, 322, 402, 469, 809, 968
HpySE526I	ACGT	1 cut(s)	760
Hsp92II	CATG	3 cut(s)	356, 590, 939
KflI	GGGWCCC	1 cut(s)	547
Ksp22I	TGATCA	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
LmnI	GCTCC	2 cut(s)	307, 1019
Lsp1109I	GCAGC	3 cut(s)	301, 361, 1021
LweI	GCATC	4 cut(s)	184, 361, 745, 1046
MaeI	CTAG	1 cut(s)	14
MaeII	ACGT	1 cut(s)	760
MaeIII	GTNAC	3 cut(s)	113, 799, 952
MalI	GATC	6 cut(s)	123, 178, 234, 345, 410, 657
MboI	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
MboII	GAAGA	7 cut(s)	57, 171, 440, 548, 764, 894, 1113
MfeI	CAATTG	1 cut(s)	609
MflI	RGATCY	2 cut(s)	176, 343
MhlI	GDGCHC	2 cut(s)	304, 943
MluCI	AATT	7 cut(s)	22, 333, 420, 525, 609, 767, 948
MlyI	GAGTC	3 cut(s)	440, 624, 682
MnlI	CCTC	7 cut(s)	104, 181, 445, 839, 888, 1020, 1052
MroXI	GAANNNNTTC	1 cut(s)	477
MseI	TTAA	3 cut(s)	132, 329, 1022
MslI	CAYNNNNRTG	1 cut(s)	1022
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	533
MspR9I	CCNGG	1 cut(s)	534
MunI	CAATTG	1 cut(s)	609
Mva1269I	GAATGC	1 cut(s)	1097
MwoI	GCNNNNNNNGC	4 cut(s)	68, 323, 1011, 1043
NciI	CCSGG	1 cut(s)	534
NdeII	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
NlaIII	CATG	3 cut(s)	356, 590, 939
NlaIV	GGNNCC	5 cut(s)	284, 548, 549, 941, 1015
NmuCI	GTSAC	2 cut(s)	799, 952
NspI	RCATGY	1 cut(s)	590
PaeI	GCATGC	1 cut(s)	590
PctI	GAATGC	1 cut(s)	1097
PdmI	GAANNNNTTC	1 cut(s)	477
PfeI	GAWTC	3 cut(s)	510, 854, 964
PkrI	GCNGC	3 cut(s)	316, 376, 1036
PleI	GAGTC	3 cut(s)	439, 624, 682
PmaCI	CACGTG	1 cut(s)	761
PmlI	CACGTG	1 cut(s)	761
PpsI	GAGTC	3 cut(s)	439, 624, 682
Ppu21I	YACGTR	1 cut(s)	761
PpuMI	RGGWCCY	1 cut(s)	547
PsiI	TTATAA	1 cut(s)	386
Psp5II	RGGWCCY	1 cut(s)	547
PspCI	CACGTG	1 cut(s)	761
PspN4I	GGNNCC	5 cut(s)	284, 548, 549, 941, 1015
PspOMI	GGGCCC	1 cut(s)	939
PspPI	GGNCC	5 cut(s)	530, 535, 547, 939, 940
PspPPI	RGGWCCY	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	176, 343
PvuII	CAGCTG	1 cut(s)	71
RsaI	GTAC	4 cut(s)	293, 364, 414, 720
RsaNI	GTAC	4 cut(s)	292, 363, 413, 719
RseI	CAYNNNNRTG	1 cut(s)	1022
SaqAI	TTAA	3 cut(s)	132, 329, 1022
SatI	GCNGC	3 cut(s)	315, 375, 1035
Sau3AI	GATC	6 cut(s)	121, 176, 232, 343, 408, 655
Sau96I	GGNCC	5 cut(s)	530, 535, 547, 939, 940
SchI	GAGTC	3 cut(s)	440, 624, 682
ScrFI	CCNGG	1 cut(s)	534
SduI	GDGCHC	2 cut(s)	304, 943
SfaNI	GCATC	4 cut(s)	184, 361, 745, 1046
SfcI	CTRYAG	1 cut(s)	394
SinI	GGWCC	2 cut(s)	530, 547
SmiMI	CAYNNNNRTG	1 cut(s)	1022
SphI	GCATGC	1 cut(s)	590
Sse9I	AATT	7 cut(s)	22, 333, 420, 525, 609, 767, 948
SsiI	CCGC	1 cut(s)	341
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	1 cut(s)	538
TaaI	ACNGT	7 cut(s)	90, 119, 398, 440, 597, 650, 850
TaiI	ACGT	1 cut(s)	763
TaqI	TCGA	2 cut(s)	513, 880
TasI	AATT	7 cut(s)	22, 333, 420, 525, 609, 767, 948
TatI	WGTACW	3 cut(s)	291, 362, 718
TfiI	GAWTC	3 cut(s)	510, 854, 964
Tru1I	TTAA	3 cut(s)	132, 329, 1022
Tru9I	TTAA	3 cut(s)	132, 329, 1022
TscAI	CASTG	4 cut(s)	124, 301, 445, 864
TseFI	GTSAC	2 cut(s)	799, 952
TseI	GCWGC	3 cut(s)	314, 374, 1034
Tsp45I	GTSAC	2 cut(s)	799, 952
TspDTI	ATGAA	3 cut(s)	717, 765, 924
TspRI	CASTG	4 cut(s)	124, 301, 445, 864
VpaK11BI	GGWCC	2 cut(s)	530, 547
XapI	RAATTY	1 cut(s)	22
XceI	RCATGY	1 cut(s)	590
XmnI	GAANNNNTTC	1 cut(s)	477
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.