Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Forward (+)

39558837 .. 39560179

Gene Structure 1343 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0230800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGCAATCCAATGAGAACATAAACCCTAACCCAGATGATCAAGTAATCAATCTAAACCAACCTGATCCTCAAGCAGAGCAATCCCTTACTTTGCTAGGCTTCCTTATTGCTGACAAATTTCTCAACACTGCTGCTATTATCCGAATCCTTACTCGAGCATGGTCTGACTTTGGTGAAGTACACATCGAAGCTATCCGAGATCAACGTACTTTCACCATCACCCCTATGAAGGCAGAGACCCGTCAACTGATCCTTGATAGAGGATCTTGGTCTGTCATGGGTCATACGATCAGCACCAATACTTGGCCTTTGGAGGCAAGACTAGAGGACGTCCTTGTCCATTCTTTGGCTATTTGGATCCAAGCTCACGGTCTCCTGCGCGGGCAGATGACTAGGGCAAATGCTAACCTCCTTGGAGCTGTTGCTTGTACGGTGATGGAGGTCGAAAACCCTAACTCTATAAATGGTTGGAGGGGGTTCCTTCGGGTTAGAGTCAATATCAACACACTACTACCCTTGATACCTGGATTTTGGATTAGGTCTATCGACATTGAGGCTACTTTTATCAACTGTCTTGGAGCTACCCTGCTGTATGTCTGCTTGTATAGGGTAGAAGTTTATAATCACTATTTTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

212

Amino Acids

24.07

Weight (kDa)

5.84

Isoelectric Point (pI)

32.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	28 - 105	3.5e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	621
AasI	GACNNNNNNGTC	1 cut(s)	335
AatII	GACGTC	1 cut(s)	333
AccB7I	CCANNNNNTGG	2 cut(s)	303, 346
AccII	CGCG	1 cut(s)	381
AciI	CCGC	1 cut(s)	381
AclWI	GGATC	5 cut(s)	59, 244, 271, 352, 365
AcsI	RAATTY	1 cut(s)	116
AcyI	GRCGYC	1 cut(s)	330
AfaI	GTAC	3 cut(s)	180, 208, 430
AfiI	CCNNNNNNNGG	3 cut(s)	229, 303, 346
AjnI	CCWGG	1 cut(s)	523
AluBI	AGCT	4 cut(s)	191, 365, 419, 581
AluI	AGCT	4 cut(s)	191, 365, 419, 581
Alw26I	GTCTC	2 cut(s)	230, 377
AlwI	GGATC	5 cut(s)	59, 244, 271, 352, 365
Ama87I	CYCGRG	1 cut(s)	153
AoxI	GGCC	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	185, 205, 211, 445
AvaI	CYCGRG	1 cut(s)	153
BamHI	GGATCC	1 cut(s)	357
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	2 cut(s)	224, 430
BciT130I	CCWGG	1 cut(s)	525
BclI	TGATCA	1 cut(s)	37
BcoDI	GTCTC	2 cut(s)	230, 377
BfaI	CTAG	3 cut(s)	95, 323, 393
BisI	GCNGC	1 cut(s)	132
BlsI	GCNGC	1 cut(s)	133
Bme1390I	CCNGG	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	153
BmiI	GGNNCC	2 cut(s)	359, 479
BmrFI	CCNGG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	330
BsaI	GGTCTC	2 cut(s)	230, 377
BsaJI	CCNNGG	1 cut(s)	412
Bsc4I	CCNNNNNNNGG	3 cut(s)	229, 303, 346
BseBI	CCWGG	1 cut(s)	525
BseDI	CCNNGG	1 cut(s)	412
BseLI	CCNNNNNNNGG	3 cut(s)	229, 303, 346
BseXI	GCAGC	1 cut(s)	118
Bsh1236I	CGCG	1 cut(s)	381
BshFI	GGCC	1 cut(s)	307
BsiHKCI	CYCGRG	1 cut(s)	153
BslI	CCNNNNNNNGG	3 cut(s)	229, 303, 346
BsmAI	GTCTC	2 cut(s)	230, 377
BsnI	GGCC	1 cut(s)	307
Bso31I	GGTCTC	2 cut(s)	230, 377
BsoBI	CYCGRG	1 cut(s)	153
Bsp143I	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
BspACI	CCGC	1 cut(s)	381
BspANI	GGCC	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	381
BspLI	GGNNCC	2 cut(s)	359, 479
BspPI	GGATC	5 cut(s)	59, 244, 271, 352, 365
BspTNI	GGTCTC	2 cut(s)	230, 377
BssECI	CCNNGG	1 cut(s)	412
BssMI	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	412
Bst2UI	CCWGG	1 cut(s)	525
Bst4CI	ACNGT	3 cut(s)	371, 433, 572
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	383
BstFNI	CGCG	1 cut(s)	381
BstHHI	GCGC	1 cut(s)	381
BstKTI	GATC	7 cut(s)	40, 67, 202, 252, 266, 291, 360
BstMAI	GTCTC	2 cut(s)	230, 377
BstMBI	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
BstNI	CCWGG	1 cut(s)	525
BstSCI	CCNGG	1 cut(s)	523
BstUI	CGCG	1 cut(s)	381
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	263, 357
BstYI	RGATCY	2 cut(s)	263, 357
BsuRI	GGCC	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	383
CfoI	GCGC	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	179, 207, 429
CviAII	CATG	2 cut(s)	159, 277
CviJI	RGCY	8 cut(s)	99, 191, 307, 350, 365, 419, 557, 581
CviKI_1	RGCY	8 cut(s)	99, 191, 307, 350, 365, 419, 557, 581
CviQI	GTAC	3 cut(s)	179, 207, 429
DpnI	GATC	7 cut(s)	39, 66, 201, 251, 265, 290, 359
DpnII	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
DrdI	GACNNNNNNGTC	1 cut(s)	335
DseDI	GACNNNNNNGTC	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	412
Eco31I	GGTCTC	2 cut(s)	230, 377
Eco88I	CYCGRG	1 cut(s)	153
EcoRII	CCWGG	1 cut(s)	523
EcoT14I	CCWWGG	1 cut(s)	412
ErhI	CCWWGG	1 cut(s)	412
FaeI	CATG	2 cut(s)	162, 280
FaiI	YATR	9 cut(s)	20, 160, 227, 278, 285, 461, 594, 606, 621
FatI	CATG	2 cut(s)	158, 276
FauI	CCCGC	1 cut(s)	374
FbaI	TGATCA	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	132
Fsp4HI	GCNGC	1 cut(s)	132
FspBI	CTAG	3 cut(s)	95, 323, 393
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	307
HhaI	GCGC	1 cut(s)	381
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	2 cut(s)	162, 280
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HincII	GTYRAC	1 cut(s)	245
HindII	GTYRAC	1 cut(s)	245
HinfI	GANTC	2 cut(s)	144, 492
HphI	GGTGA	4 cut(s)	185, 205, 211, 445
Hpy166II	GTNNAC	2 cut(s)	181, 245
Hpy188I	TCNGA	3 cut(s)	143, 166, 197
Hpy8I	GTNNAC	2 cut(s)	181, 245
HpyAV	CCTTC	2 cut(s)	223, 491
HpyCH4III	ACNGT	3 cut(s)	371, 433, 572
HpyCH4IV	ACGT	2 cut(s)	205, 330
HpyCH4V	TGCA	1 cut(s)	4
HpySE526I	ACGT	2 cut(s)	205, 330
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	162, 280
HspAI	GCGC	1 cut(s)	379
Ksp22I	TGATCA	1 cut(s)	37
Kzo9I	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
LmnI	GCTCC	2 cut(s)	416, 578
LpnPI	CCDG	6 cut(s)	45, 75, 389, 510, 537, 599
Lsp1109I	GCAGC	1 cut(s)	118
MaeI	CTAG	3 cut(s)	95, 323, 393
MaeII	ACGT	2 cut(s)	205, 330
MalI	GATC	7 cut(s)	39, 66, 201, 251, 265, 290, 359
MboI	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
MflI	RGATCY	2 cut(s)	263, 357
MluCI	AATT	1 cut(s)	116
MlyI	GAGTC	1 cut(s)	501
MmeI	TCCRAC	1 cut(s)	449
MnlI	CCTC	8 cut(s)	78, 254, 307, 319, 419, 433, 465, 547
MslI	CAYNNNNRTG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	525
MvaI	CCWGG	1 cut(s)	525
MvnI	CGCG	1 cut(s)	381
NdeII	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
NlaIII	CATG	2 cut(s)	162, 280
NlaIV	GGNNCC	2 cut(s)	359, 479
PaeR7I	CTCGAG	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	144
PflMI	CCANNNNNTGG	2 cut(s)	303, 346
PkrI	GCNGC	1 cut(s)	133
PleI	GAGTC	1 cut(s)	500
PpsI	GAGTC	1 cut(s)	500
PsiI	TTATAA	1 cut(s)	621
Psp6I	CCWGG	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	523
PspN4I	GGNNCC	2 cut(s)	359, 479
PspXI	VCTCGAGB	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	263, 357
RsaI	GTAC	3 cut(s)	180, 208, 430
RsaNI	GTAC	3 cut(s)	179, 207, 429
RseI	CAYNNNNRTG	1 cut(s)	224
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	7 cut(s)	37, 64, 199, 249, 263, 288, 357
SchI	GAGTC	1 cut(s)	501
ScrFI	CCNGG	1 cut(s)	525
Sfr274I	CTCGAG	1 cut(s)	153
SlaI	CTCGAG	1 cut(s)	153
SmiMI	CAYNNNNRTG	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	69, 153
SmoI	CTYRAG	2 cut(s)	69, 153
Sse9I	AATT	1 cut(s)	116
SsiI	CCGC	1 cut(s)	381
SspMI	CTAG	3 cut(s)	95, 323, 393
StyD4I	CCNGG	1 cut(s)	523
StyI	CCWWGG	1 cut(s)	412
TaaI	ACNGT	3 cut(s)	371, 433, 572
TaiI	ACGT	2 cut(s)	208, 333
TaqI	TCGA	4 cut(s)	154, 186, 444, 546
TasI	AATT	1 cut(s)	116
TatI	WGTACW	1 cut(s)	178
TfiI	GAWTC	1 cut(s)	144
TscAI	CASTG	1 cut(s)	133
TseI	GCWGC	1 cut(s)	131
TspDTI	ATGAA	2 cut(s)	242, 623
TspRI	CASTG	1 cut(s)	133
Van91I	CCANNNNNTGG	2 cut(s)	303, 346
XapI	RAATTY	1 cut(s)	116
XhoI	CTCGAG	1 cut(s)	153
XspI	CTAG	3 cut(s)	95, 323, 393
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.