FvH4_4g12820

histone-lysine N-methyltransferase, H3 lysine-9 specific

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0001110
Physical Location & Seq
Reverse (-)
16484139 .. 16485844
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g12820.t1

Sequence Viewer

Length: 1218 bp
ATGGGCGAGCCTAGGGTTAGCCCCGGCCGACAAAACCGTCGGAAACGTATGTCATCACCGGATGCGAAGAAAGACGGTCGAAAGAAAGCTAAGGTCGACGGTGACCCAGACACTTCGGAGGTAAATAATCTAGGGATCAGCTGGTTTGCTCCTTTGACTGTTTTGAGCAACAGCTCTATTACCTCTATCAAAAAGTTTAGAGAAACCCGTAGAATTAACCATTTACTACGTACTGATGAGTTCCATTTGACTCGCAAGAGTCGACGGGATTTAGTTCAAGAGTCTTCTTCCAAGGTTGATGAGAATGATTTGCCTGGTTTGGTTTGTAATGATCTTTGTAATGGGAAAGAAAACTTATGCATCCCTGTTACAAATGAAGTTGATGACCCTCCTGTTGCTCCTGAAGAGTTTGAATATATCAGCTCCACTAGAGTTCCAAAAAATTTAGTGACTCCAGCGAGCGCTGAGGGATGTAATTGTAAAGGAAAGTGTACTGATACGAGGACTTGTTCTTGTGCTACTCTTAATGGCTCAATTTTTCCTTATGTTGGGAAAGCTGGTGGCGGCAGGTTGTTTGAGCCAAAGGCTGTTGTCTTCGAGTGCGGTCCGAACTGCGGCTGCGGGCCTATGTGTTTGAACCGCACTTCTCAGCAGGGATTGAAGTATAGGCTAGAGGTTTACAAGACACCTGATAAAGGCTGGGGTGTTAGGTCCTGGGATTATATTCCCTCGGGTGGTTATGTGTGCGGGTACACTGGTGTTCTAAGGAAGACCAGTGACCTGGACAATGTGTCTGGGAATGATTACTTTTTTGAAATTGATTGTGAGCATACAATGAATGGGATTGGCGTGAGGGAGAAGCGCCTTGGTGAAGTGCCGCCCATTGTAAATGGTCATATTGCCGGGGTAGATGGAGATGGCAAGTTATTAGAAGAAAGTGACCCCGACTATTGTATAGATGCTGCATCCAGTGGGAATGTTACTAGGTTCATCAACCATAGTTGTGAGCCAAATCTGTTTGTGCAGTGTGTCTTGAGTTCTCACCATGATGTTAAACAAGCTAGAATTGTCTTGTTTGCTTCGGAGAACATACCTCCCATGCAAGAGTTGACATATGACTATGGCTATGAGCTTGGTAGTGTCGTCGACACCGATGGAATAGTAAAGGAGTTACCTTGTTGTTGTGGTACCGCGGACTGTCGAAAGCGTTTGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 ko04211 map00310 map04211
Pfam Domains
Protein Families
Pre-SET SAD_SRA SET

Protein Analysis

406

Amino Acids

44.63

Weight (kDa)

6.05

Isoelectric Point (pI)

33.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pre-SET PF05033 114 - 214 1.2e-17 Pre-SET motif
SET PF00856 233 - 375 4.9e-20 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 36
Acc36I ACCTGC 1 cut(s) 558
Acc65I GGTACC 1 cut(s) 1187
AccB1I GGYRCC 1 cut(s) 1187
AccI GTMKAC 3 cut(s) 96, 262, 1146
AccII CGCG 1 cut(s) 1193
AciI CCGC 9 cut(s) 564, 603, 615, 621, 640, 747, 878, 1191, 1193
AclWI GGATC 1 cut(s) 143
AcoI YGGCCR 1 cut(s) 25
AcsI RAATTY 1 cut(s) 442
AcuI CTGAAG 1 cut(s) 423
AfaI GTAC 5 cut(s) 232, 493, 752, 1189, 1214
AfeI AGCGCT 1 cut(s) 463
AfiI CCNNNNNNNGG 4 cut(s) 548, 614, 695, 734
AgsI TTSAA 5 cut(s) 278, 413, 637, 661, 815
AhdI GACNNNNNGTC 1 cut(s) 790
AjnI CCWGG 3 cut(s) 313, 713, 780
AluBI AGCT 7 cut(s) 89, 141, 174, 423, 557, 1061, 1132
AluI AGCT 7 cut(s) 89, 141, 174, 423, 557, 1061, 1132
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 730
Aor51HI AGCGCT 1 cut(s) 463
AoxI GGCC 2 cut(s) 25, 623
ApeKI GCWGC 2 cut(s) 618, 962
ApoI RAATTY 1 cut(s) 442
Asp718I GGTACC 1 cut(s) 1187
AspA2I CCTAGG 1 cut(s) 11
AspLEI GCGC 2 cut(s) 464, 864
AspS9I GGNCC 3 cut(s) 605, 623, 711
AsuC2I CCSGG 2 cut(s) 24, 904
AsuHPI GGTGA 4 cut(s) 48, 113, 881, 1034
AvaI CYCGRG 1 cut(s) 730
AvaII GGWCC 2 cut(s) 605, 711
AvrII CCTAGG 1 cut(s) 11
BaeI ACNNNNGTAYC 2 cut(s) 742, 775
BanI GGYRCC 1 cut(s) 1187
BbsI GAAGAC 3 cut(s) 276, 586, 776
BbvCI CCTCAGC 1 cut(s) 465
BbvI GCAGC 2 cut(s) 605, 949
BccI CCATC 3 cut(s) 905, 911, 1148
BciT130I CCWGG 3 cut(s) 315, 715, 782
BcnI CCSGG 2 cut(s) 24, 904
BfaI CTAG 7 cut(s) 12, 131, 429, 671, 984, 1062, 1216
BfoI RGCGCY 2 cut(s) 465, 865
BfuAI ACCTGC 1 cut(s) 558
BisI GCNGC 5 cut(s) 565, 616, 619, 878, 963
BlnI CCTAGG 1 cut(s) 11
BlsI GCNGC 5 cut(s) 566, 617, 620, 879, 964
Bme1390I CCNGG 5 cut(s) 24, 315, 715, 782, 904
Bme18I GGWCC 2 cut(s) 605, 711
BmeRI GACNNNNNGTC 1 cut(s) 790
BmeT110I CYCGRG 1 cut(s) 730
BmgT120I GGNCC 3 cut(s) 605, 623, 711
BmiI GGNNCC 1 cut(s) 1189
BmrFI CCNGG 5 cut(s) 24, 315, 715, 782, 904
BmsI GCATC 4 cut(s) 52, 369, 949, 974
BpiI GAAGAC 3 cut(s) 276, 586, 776
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 2 cut(s) 90, 465
BpuEI CTTGAG 1 cut(s) 1054
BpuMI CCSGG 2 cut(s) 24, 904
BsaAI YACGTR 1 cut(s) 230
BsaJI CCNNGG 8 cut(s) 11, 22, 291, 714, 729, 865, 903, 1191
BsaWI WCCGGW 1 cut(s) 58
Bsc4I CCNNNNNNNGG 4 cut(s) 548, 614, 695, 734
Bse1I ACTGG 3 cut(s) 760, 774, 969
BseBI CCWGG 3 cut(s) 315, 715, 782
BseDI CCNNGG 8 cut(s) 11, 22, 291, 714, 729, 865, 903, 1191
BseGI GGATG 4 cut(s) 67, 360, 476, 965
BseLI CCNNNNNNNGG 4 cut(s) 548, 614, 695, 734
BseMII CTCAG 2 cut(s) 456, 662
BseNI ACTGG 3 cut(s) 760, 774, 969
BseX3I CGGCCG 1 cut(s) 25
BseXI GCAGC 2 cut(s) 605, 949
BseYI CCCAGC 1 cut(s) 699
BsgI GTGCAG 1 cut(s) 1043
Bsh1236I CGCG 1 cut(s) 1193
Bsh1285I CGRYCG 2 cut(s) 28, 79
BshFI GGCC 2 cut(s) 27, 625
BshNI GGYRCC 1 cut(s) 1187
BsiEI CGRYCG 2 cut(s) 28, 79
BsiHKCI CYCGRG 1 cut(s) 730
BsiSI CCGG 3 cut(s) 24, 59, 903
BslI CCNNNNNNNGG 4 cut(s) 548, 614, 695, 734
BsnI GGCC 2 cut(s) 27, 625
BsoBI CYCGRG 1 cut(s) 730
Bsp143I GATC 2 cut(s) 135, 331
BspACI CCGC 9 cut(s) 564, 603, 615, 621, 640, 747, 878, 1191, 1193
BspANI GGCC 2 cut(s) 27, 625
BspCNI CTCAG 2 cut(s) 457, 661
BspFNI CGCG 1 cut(s) 1193
BspLI GGNNCC 1 cut(s) 1189
BspMI ACCTGC 1 cut(s) 558
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 1187
BsrI ACTGG 3 cut(s) 760, 774, 969
BssECI CCNNGG 8 cut(s) 11, 22, 291, 714, 729, 865, 903, 1191
BssMI GATC 2 cut(s) 135, 331
BssT1I CCWWGG 3 cut(s) 11, 291, 865
Bst2UI CCWGG 3 cut(s) 315, 715, 782
Bst4CI ACNGT 5 cut(s) 38, 77, 101, 160, 1199
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 230
BstC8I GCNNGC 3 cut(s) 8, 460, 623
BstDEI CTNAG 4 cut(s) 90, 465, 648, 764
BstDSI CCRYGG 1 cut(s) 1191
BstEII GGTNACC 1 cut(s) 101
BstENI CCTNNNNNAGG 1 cut(s) 693
BstF5I GGATG 4 cut(s) 67, 360, 476, 965
BstFNI CGCG 1 cut(s) 1193
BstH2I RGCGCY 2 cut(s) 465, 865
BstHHI GCGC 2 cut(s) 464, 864
BstKTI GATC 2 cut(s) 138, 334
BstMBI GATC 2 cut(s) 135, 331
BstMCI CGRYCG 2 cut(s) 28, 79
BstNI CCWGG 3 cut(s) 315, 715, 782
BstPI GGTNACC 1 cut(s) 101
BstSCI CCNGG 5 cut(s) 22, 313, 713, 780, 902
BstSNI TACGTA 1 cut(s) 230
BstUI CGCG 1 cut(s) 1193
BstV1I GCAGC 2 cut(s) 605, 949
BstV2I GAAGAC 3 cut(s) 276, 586, 776
BstXI CCANNNNNNTGG 1 cut(s) 781
BstZI CGGCCG 1 cut(s) 25
BsuRI GGCC 2 cut(s) 27, 625
BtgI CCRYGG 1 cut(s) 1191
BtsCI GGATG 4 cut(s) 67, 360, 476, 965
BtsI GCAGTG 1 cut(s) 1031
BtsIMutI CAGTG 4 cut(s) 753, 781, 976, 1031
BveI ACCTGC 1 cut(s) 558
Cac8I GCNNGC 3 cut(s) 8, 460, 623
CfoI GCGC 2 cut(s) 464, 864
Cfr13I GGNCC 3 cut(s) 605, 623, 711
Cfr42I CCGCGG 1 cut(s) 1194
CpoI CGGWCCG 1 cut(s) 605
Csp6I GTAC 5 cut(s) 231, 492, 751, 1188, 1213
CspI CGGWCCG 1 cut(s) 605
CviAII CATG 2 cut(s) 1046, 1099
CviQI GTAC 5 cut(s) 231, 492, 751, 1188, 1213
DdeI CTNAG 4 cut(s) 90, 465, 648, 764
DpnI GATC 2 cut(s) 137, 333
DpnII GATC 2 cut(s) 135, 331
DrdI GACNNNNNNGTC 1 cut(s) 36
DriI GACNNNNNGTC 1 cut(s) 790
DseDI GACNNNNNNGTC 1 cut(s) 36
EaeI YGGCCR 1 cut(s) 25
EagI CGGCCG 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 399
Eam1105I GACNNNNNGTC 1 cut(s) 790
EarI CTCTTC 1 cut(s) 399
EclXI CGGCCG 1 cut(s) 25
Eco105I TACGTA 1 cut(s) 230
Eco130I CCWWGG 3 cut(s) 11, 291, 865
Eco47I GGWCC 2 cut(s) 605, 711
Eco47III AGCGCT 1 cut(s) 463
Eco52I CGGCCG 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 423
Eco88I CYCGRG 1 cut(s) 730
Eco91I GGTNACC 1 cut(s) 101
EcoNI CCTNNNNNAGG 1 cut(s) 693
EcoO109I RGGNCCY 1 cut(s) 711
EcoO65I GGTNACC 1 cut(s) 101
EcoRII CCWGG 3 cut(s) 313, 713, 780
EcoT14I CCWWGG 3 cut(s) 11, 291, 865
EcoT22I ATGCAT 1 cut(s) 362
ErhI CCWWGG 3 cut(s) 11, 291, 865
FaeI CATG 2 cut(s) 1049, 1102
FatI CATG 2 cut(s) 1045, 1098
FauI CCCGC 2 cut(s) 614, 740
FauNDI CATATG 1 cut(s) 1114
FblI GTMKAC 3 cut(s) 96, 262, 1146
Fnu4HI GCNGC 5 cut(s) 565, 616, 619, 878, 963
FokI GGATG 4 cut(s) 74, 347, 483, 952
Fsp4HI GCNGC 5 cut(s) 565, 616, 619, 878, 963
FspBI CTAG 7 cut(s) 12, 131, 429, 671, 984, 1062, 1216
GlaI GCGC 2 cut(s) 463, 863
GluI GCNGC 5 cut(s) 565, 616, 619, 878, 963
GsaI CCCAGC 1 cut(s) 703
GsuI CTGGAG 1 cut(s) 438
HaeII RGCGCY 2 cut(s) 465, 865
HaeIII GGCC 2 cut(s) 27, 625
HapII CCGG 3 cut(s) 24, 59, 903
HhaI GCGC 2 cut(s) 464, 864
Hin1II CATG 2 cut(s) 1049, 1102
Hin6I GCGC 2 cut(s) 462, 862
HinP1I GCGC 2 cut(s) 462, 862
HincII GTYRAC 4 cut(s) 97, 263, 1110, 1147
HindII GTYRAC 4 cut(s) 97, 263, 1110, 1147
HinfI GANTC 4 cut(s) 250, 259, 281, 451
HpaII CCGG 3 cut(s) 24, 59, 903
HphI GGTGA 4 cut(s) 48, 113, 881, 1034
Hpy166II GTNNAC 7 cut(s) 97, 263, 492, 679, 753, 1110, 1147
Hpy188I TCNGA 4 cut(s) 42, 118, 609, 1084
Hpy188III TCNNGA 3 cut(s) 278, 401, 1033
Hpy8I GTNNAC 7 cut(s) 97, 263, 492, 679, 753, 1110, 1147
Hpy99I CGWCG 4 cut(s) 42, 101, 267, 1148
HpyCH4III ACNGT 5 cut(s) 38, 77, 101, 160, 1199
HpyCH4IV ACGT 2 cut(s) 46, 229
HpyCH4V TGCA 4 cut(s) 360, 965, 1024, 1102
HpyF3I CTNAG 4 cut(s) 90, 465, 648, 764
HpySE526I ACGT 2 cut(s) 46, 229
Hsp92II CATG 2 cut(s) 1049, 1102
HspAI GCGC 2 cut(s) 462, 862
KpnI GGTACC 1 cut(s) 1191
KspI CCGCGG 1 cut(s) 1194
Kzo9I GATC 2 cut(s) 135, 331
LmnI GCTCC 3 cut(s) 154, 403, 428
Lsp1109I GCAGC 2 cut(s) 605, 949
LweI GCATC 4 cut(s) 52, 369, 949, 974
MaeI CTAG 7 cut(s) 12, 131, 429, 671, 984, 1062, 1216
MaeII ACGT 2 cut(s) 46, 229
MaeIII GTNAC 7 cut(s) 101, 367, 448, 776, 938, 979, 1170
MalI GATC 2 cut(s) 137, 333
MboI GATC 2 cut(s) 135, 331
MboII GAAGA 7 cut(s) 79, 276, 279, 416, 586, 781, 944
MluCI AATT 6 cut(s) 213, 442, 475, 534, 816, 1065
MlyI GAGTC 4 cut(s) 244, 268, 290, 445
MmeI TCCRAC 1 cut(s) 20
MnlI CCTC 9 cut(s) 112, 193, 399, 460, 495, 667, 739, 846, 1104
Mph1103I ATGCAT 1 cut(s) 362
MseI TTAA 3 cut(s) 216, 525, 1053
MslI CAYNNNNRTG 2 cut(s) 1002, 1047
MspA1I CMGCKG 2 cut(s) 141, 1193
MspI CCGG 3 cut(s) 24, 59, 903
MspR9I CCNGG 5 cut(s) 24, 315, 715, 782, 904
MvaI CCWGG 3 cut(s) 315, 715, 782
MvnI CGCG 1 cut(s) 1193
NciI CCSGG 2 cut(s) 24, 904
NdeI CATATG 1 cut(s) 1114
NdeII GATC 2 cut(s) 135, 331
NlaIII CATG 2 cut(s) 1049, 1102
NlaIV GGNNCC 1 cut(s) 1189
NmuCI GTSAC 4 cut(s) 101, 448, 776, 938
NsiI ATGCAT 1 cut(s) 362
PcsI WCGNNNNNNNCGW 2 cut(s) 259, 1149
PkrI GCNGC 5 cut(s) 566, 617, 620, 879, 964
PleI GAGTC 4 cut(s) 244, 267, 289, 445
PpsI GAGTC 4 cut(s) 244, 267, 289, 445
Ppu21I YACGTR 1 cut(s) 230
PpuMI RGGWCCY 1 cut(s) 711
Psp5II RGGWCCY 1 cut(s) 711
Psp6I CCWGG 3 cut(s) 313, 713, 780
PspEI GGTNACC 1 cut(s) 101
PspFI CCCAGC 1 cut(s) 699
PspGI CCWGG 3 cut(s) 313, 713, 780
PspN4I GGNNCC 1 cut(s) 1189
PspPI GGNCC 3 cut(s) 605, 623, 711
PspPPI RGGWCCY 1 cut(s) 711
PvuII CAGCTG 1 cut(s) 141
RsaI GTAC 5 cut(s) 232, 493, 752, 1189, 1214
RsaNI GTAC 5 cut(s) 231, 492, 751, 1188, 1213
RseI CAYNNNNRTG 2 cut(s) 1002, 1047
Rsr2I CGGWCCG 1 cut(s) 605
RsrII CGGWCCG 1 cut(s) 605
SacII CCGCGG 1 cut(s) 1194
SalI GTCGAC 3 cut(s) 95, 261, 1145
SaqAI TTAA 3 cut(s) 216, 525, 1053
SatI GCNGC 5 cut(s) 565, 616, 619, 878, 963
Sau3AI GATC 2 cut(s) 135, 331
Sau96I GGNCC 3 cut(s) 605, 623, 711
SchI GAGTC 4 cut(s) 244, 268, 290, 445
ScrFI CCNGG 5 cut(s) 24, 315, 715, 782, 904
SfaNI GCATC 4 cut(s) 52, 369, 949, 974
Sfr303I CCGCGG 1 cut(s) 1194
SgrBI CCGCGG 1 cut(s) 1194
SinI GGWCC 2 cut(s) 605, 711
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1047
SmlI CTYRAG 1 cut(s) 1033
SmoI CTYRAG 1 cut(s) 1033
SnaBI TACGTA 1 cut(s) 230
Sse9I AATT 6 cut(s) 213, 442, 475, 534, 816, 1065
SsiI CCGC 9 cut(s) 564, 603, 615, 621, 640, 747, 878, 1191, 1193
SspMI CTAG 7 cut(s) 12, 131, 429, 671, 984, 1062, 1216
StyD4I CCNGG 5 cut(s) 22, 313, 713, 780, 902
StyI CCWWGG 3 cut(s) 11, 291, 865
TaaI ACNGT 5 cut(s) 38, 77, 101, 160, 1199
TaiI ACGT 2 cut(s) 49, 232
TaqI TCGA 6 cut(s) 79, 96, 262, 597, 1146, 1201
TasI AATT 6 cut(s) 213, 442, 475, 534, 816, 1065
TatI WGTACW 2 cut(s) 491, 1212
TauI GCSGC 3 cut(s) 567, 618, 880
Tru1I TTAA 3 cut(s) 216, 525, 1053
Tru9I TTAA 3 cut(s) 216, 525, 1053
TscAI CASTG 4 cut(s) 760, 781, 976, 1031
TseFI GTSAC 4 cut(s) 101, 448, 776, 938
TseI GCWGC 2 cut(s) 618, 962
Tsp45I GTSAC 4 cut(s) 101, 448, 776, 938
TspDTI ATGAA 3 cut(s) 390, 851, 979
TspRI CASTG 4 cut(s) 760, 781, 976, 1031
VpaK11BI GGWCC 2 cut(s) 605, 711
XagI CCTNNNNNAGG 1 cut(s) 693
XapI RAATTY 1 cut(s) 442
XmaJI CCTAGG 1 cut(s) 11
XmiI GTMKAC 3 cut(s) 96, 262, 1146
XspI CTAG 7 cut(s) 12, 131, 429, 671, 984, 1062, 1216
Zsp2I ATGCAT 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.