Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0025254.1

Orthogroup ID

OG0001110

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2164

Gene Structure 2164 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0025254.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 673 bp

ggcggtgaaagcagaagcccagaagaaagcttccagagccgcaaagagaggtgcaaaaaaatctaagaagggtgattcgaagaaggcagatacaaaggtggcaaaacgacctgatttgaaggcattaaccaagatgaatgacgaaaaagaaattttgtttccttctaaaagatttggaagcattccaggtattgatgtcgggcatcagttctattctcgggctgaaatggttgctgttggtttccacagccactggctgaatgggattgattatatgggccagtcctatagtaaagggaagtacagcaactatacaatgccacttgcagttgctattgttatatcaggcatgtatgaagatgatttggacaatgctgaggaagttgtgtatactggtcaaggtggacataatttgacaggtgataagcgtcaatttcgagatcaagttctagaacgtggtaatttggcactcaagaattgtgtggaacaagatgtacctgttagagtagtccgtggccatgattgtaaaagtagttactgtggcaaaatttacacttatgatggactgtacaaggttgtgaagtattgggcagagaagggtatttctggatttactgtttttaagtatcgtcttaagcggcttgaggggcagccactgttaaccaccaaccag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

224

Amino Acids

25.13

Weight (kDa)

9.56

Isoelectric Point (pI)

26.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001110)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G13960 AT5G13960
fragaria_vesca	FvH4_3g12630 FvH4_4g12820 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_4g22710 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300 FvH4_6g54300
malus_domestica	MD09G1002600.v1.1 MD13G1130100.v1.1 MD16G1130300.v1.1 MD17G1006800.v1.1
prunus_persica	Prupe.1G216000_v2.0.a1 Prupe.1G216000_v2.0.a1 Prupe.3G313600_v2.0.a1
pyrus_communis	pycom111g00200 pycom111g00210 pycom13g11320 pycom17g00240
rosa_chinensis	RchiOBHm_Chr2g0176511 RchiOBHm_Chr4g0412311 RchiOBHm_Chr4g0428931
rosa_laevigata	RLG00000007113 RLG00000008308 RLG00000022419
rosa_multiflora	Rmu_co8243205.1_g000001 Rmu_co8447061.1_g000001 Rmu_sc0007311.1_g000001 Rmu_sc0010364.1_g000006 Rmu_sc0011904.1_g000010 Rmu_sc0023962.1_g000001 Rmu_sc0025254.1_g000001 Rmu_sc0026969.1_g000001
rosa_roxburghii	Rroxscaffold_2G00076350 Rroxscaffold_5G00370600
rosa_rugosa	Rorug02G0595300 Rorug02G0595400 Rorug04G0105100 Rorug04G0230700 Rorug04G0230800
rosa_samantha	Rh2AG673600 Rh2BG684800 Rh2CG647600 Rh2DG698500 Rh4AG172200 Rh4AG287100 Rh4BG171400 Rh4BG292900 Rh4CG183000 Rh4CG309000 Rh4DG166600 Rh4DG290200
rosa_wichuraiana	Rw2G055250 Rw4G014370 Rw4G024900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	390
AciI	CCGC	3 cut(s)	3, 40, 638
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	2 cut(s)	151, 547
AfaI	GTAC	3 cut(s)	303, 496, 570
AflII	CTTAAG	1 cut(s)	633
AgsI	TTSAA	1 cut(s)	119
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	1 cut(s)	30
AluI	AGCT	1 cut(s)	30
AlwNI	CAGNNNCTG	2 cut(s)	253, 656
Ama87I	CYCGRG	1 cut(s)	217
AoxI	GGCC	2 cut(s)	278, 515
ApeKI	GCWGC	1 cut(s)	650
ApoI	RAATTY	2 cut(s)	151, 547
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	17, 84, 432
AsuII	TTCGAA	1 cut(s)	78
AvaI	CYCGRG	1 cut(s)	217
BaeI	ACNNNNGTAYC	2 cut(s)	82, 115
BalI	TGGCCA	1 cut(s)	517
BbvCI	CCTCAGC	1 cut(s)	376
BbvI	GCAGC	1 cut(s)	662
BccI	CCATC	1 cut(s)	555
BciT130I	CCWGG	1 cut(s)	187
BfaI	CTAG	1 cut(s)	450
BfmI	CTRYAG	1 cut(s)	287
BfrI	CTTAAG	1 cut(s)	633
BisI	GCNGC	3 cut(s)	40, 639, 651
BlsI	GCNGC	3 cut(s)	41, 640, 652
Bme1390I	CCNGG	1 cut(s)	187
BmeT110I	CYCGRG	1 cut(s)	217
BmgT120I	GGNCC	1 cut(s)	278
BmrFI	CCNGG	1 cut(s)	187
BmsI	GCATC	1 cut(s)	212
Bpu10I	CCTNAGC	1 cut(s)	376
Bpu14I	TTCGAA	1 cut(s)	78
BpuEI	CTTGAG	2 cut(s)	456, 663
BsaJI	CCNNGG	1 cut(s)	512
Bse1I	ACTGG	3 cut(s)	258, 281, 398
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	512
BseMII	CTCAG	1 cut(s)	367
BseNI	ACTGG	3 cut(s)	258, 281, 398
BseXI	GCAGC	1 cut(s)	662
BshFI	GGCC	2 cut(s)	280, 517
BsiHKCI	CYCGRG	1 cut(s)	217
BsmI	GAATGC	1 cut(s)	181
BsnI	GGCC	2 cut(s)	280, 517
BsoBI	CYCGRG	1 cut(s)	217
Bsp119I	TTCGAA	1 cut(s)	78
Bsp1407I	TGTACA	1 cut(s)	568
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	3 cut(s)	3, 40, 638
BspANI	GGCC	2 cut(s)	280, 517
BspCNI	CTCAG	1 cut(s)	368
BspT104I	TTCGAA	1 cut(s)	78
BspTI	CTTAAG	1 cut(s)	633
BsrGI	TGTACA	1 cut(s)	568
BsrI	ACTGG	3 cut(s)	258, 281, 398
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	1 cut(s)	440
BssNAI	GTATAC	1 cut(s)	391
Bst1107I	GTATAC	1 cut(s)	391
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	4 cut(s)	540, 568, 617, 658
BstAFI	CTTAAG	1 cut(s)	633
BstAUI	TGTACA	1 cut(s)	568
BstBI	TTCGAA	1 cut(s)	78
BstDEI	CTNAG	2 cut(s)	64, 376
BstDSI	CCRYGG	1 cut(s)	512
BstKTI	GATC	1 cut(s)	443
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	3 cut(s)	9, 36, 647
BstNI	CCWGG	1 cut(s)	187
BstNSI	RCATGY	1 cut(s)	353
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	287
BstV1I	GCAGC	1 cut(s)	662
BstZ17I	GTATAC	1 cut(s)	391
BsuRI	GGCC	2 cut(s)	280, 517
BtgI	CCRYGG	1 cut(s)	512
BtsIMutI	CAGTG	2 cut(s)	251, 654
CaiI	CAGNNNCTG	2 cut(s)	253, 656
Cfr13I	GGNCC	1 cut(s)	278
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	3 cut(s)	302, 495, 569
CviAII	CATG	2 cut(s)	350, 519
CviQI	GTAC	3 cut(s)	302, 495, 569
DdeI	CTNAG	2 cut(s)	64, 376
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EaeI	YGGCCR	1 cut(s)	515
Eco88I	CYCGRG	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	185
FaeI	CATG	2 cut(s)	353, 522
FatI	CATG	2 cut(s)	349, 518
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	40, 639, 651
Fsp4HI	GCNGC	3 cut(s)	40, 639, 651
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	3 cut(s)	40, 639, 651
HaeIII	GGCC	2 cut(s)	280, 517
HgaI	GACGC	1 cut(s)	417
Hin1II	CATG	2 cut(s)	353, 522
HincII	GTYRAC	1 cut(s)	661
HindII	GTYRAC	1 cut(s)	661
HindIII	AAGCTT	1 cut(s)	28
HinfI	GANTC	1 cut(s)	75
HpaI	GTTAAC	1 cut(s)	661
HphI	GGTGA	3 cut(s)	17, 84, 432
Hpy166II	GTNNAC	3 cut(s)	391, 405, 661
Hpy188III	TCNNGA	5 cut(s)	34, 438, 450, 473, 607
Hpy8I	GTNNAC	3 cut(s)	391, 405, 661
HpyAV	CCTTC	5 cut(s)	62, 77, 113, 172, 590
HpyCH4III	ACNGT	4 cut(s)	540, 568, 617, 658
HpyCH4IV	ACGT	1 cut(s)	455
HpyCH4V	TGCA	2 cut(s)	54, 327
HpyF10VI	GCNNNNNNNGC	3 cut(s)	9, 36, 647
HpyF3I	CTNAG	2 cut(s)	64, 376
HpySE526I	ACGT	1 cut(s)	455
Hsp92II	CATG	2 cut(s)	353, 522
KspAI	GTTAAC	1 cut(s)	661
Kzo9I	GATC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	662
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	534
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	3 cut(s)	35, 92, 369
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	6 cut(s)	151, 410, 432, 461, 476, 547
MluNI	TGGCCA	1 cut(s)	517
MnlI	CCTC	3 cut(s)	42, 371, 638
Mox20I	TGGCCA	1 cut(s)	517
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	4 cut(s)	126, 622, 634, 660
Msp20I	TGGCCA	1 cut(s)	517
MspCI	CTTAAG	1 cut(s)	633
MspR9I	CCNGG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	3 cut(s)	9, 36, 647
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	353, 522
NspI	RCATGY	1 cut(s)	353
NspV	TTCGAA	1 cut(s)	78
PctI	GAATGC	1 cut(s)	181
PfeI	GAWTC	1 cut(s)	75
PkrI	GCNGC	3 cut(s)	41, 640, 652
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
PspPI	GGNCC	1 cut(s)	278
PsrI	GAACNNNNNNTAC	2 cut(s)	478, 510
PstNI	CAGNNNCTG	2 cut(s)	253, 656
RsaI	GTAC	3 cut(s)	303, 496, 570
RsaNI	GTAC	3 cut(s)	302, 495, 569
SaqAI	TTAA	4 cut(s)	126, 622, 634, 660
SatI	GCNGC	3 cut(s)	40, 639, 651
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	187
SfaNI	GCATC	1 cut(s)	212
SfcI	CTRYAG	1 cut(s)	287
SfuI	TTCGAA	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	471, 633, 642
SmoI	CTYRAG	3 cut(s)	471, 633, 642
Sse9I	AATT	6 cut(s)	151, 410, 432, 461, 476, 547
SsiI	CCGC	3 cut(s)	3, 40, 638
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	4 cut(s)	540, 568, 617, 658
TaiI	ACGT	1 cut(s)	458
TaqI	TCGA	2 cut(s)	78, 437
TasI	AATT	6 cut(s)	151, 410, 432, 461, 476, 547
TatI	WGTACW	2 cut(s)	301, 568
TauI	GCSGC	2 cut(s)	42, 641
TfiI	GAWTC	1 cut(s)	75
Tru1I	TTAA	4 cut(s)	126, 622, 634, 660
Tru9I	TTAA	4 cut(s)	126, 622, 634, 660
TscAI	CASTG	2 cut(s)	258, 661
TseI	GCWGC	1 cut(s)	650
TspDTI	ATGAA	2 cut(s)	150, 370
TspGWI	ACGGA	1 cut(s)	501
TspRI	CASTG	2 cut(s)	258, 661
Vha464I	CTTAAG	1 cut(s)	633
XapI	RAATTY	2 cut(s)	151, 547
XbaI	TCTAGA	1 cut(s)	449
XceI	RCATGY	1 cut(s)	353
XcmI	CCANNNNNNNNNTGG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	390
XspI	CTAG	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.