Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Forward (+)

8331631 .. 8335390

Gene Structure 3760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13880.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2997 bp

ATGGGTTTATTTTGTTTTTCTGAGAAGGCTGAACAGGAACTTACAAAAACGTATACTGCGCACCTTGCACGTGCACCTCACCTTTCTGAAGAAGTATCAAGTTTGAGCGTGGAAGATGATTGTGCCATCGCTAGTAGCGCTACTGTTTCTGACCAAGTGAATCTAAAGATTGAGGATGATATTGCTATCAATGAGGCTAAGATCCAGCATGCAAATATATCCAAGATAGTAAGAGACAAGGACTTTGCTACCTTACAGAAGTTTGGAGGCATCGAAGGAATTGCAGAGGCACTCGGTACAGATTTGCACAACGGAATCCCAGGTGACGGACAAAATCTTCATGATCAACACAGTGCAGTAGTCTCAACAACACAAGCTCCAACTCCAAGCTTCTTCAACCTTCTCCTACGATCTTGCTTCAATTGGACCTTTCTCCTTCTCCTGGTGTCTGTGATCCTGTTAATTGTGTTTGGTATCCAACAAGAAGGCCCAAGTAGCGGTTGGCTTGAAGGAGCTGTTGGAGCGTTTGCGATCATCATGTTTGTGGTTGTGTCTACAATGCGCAAGTATTTCTTCGTGCCACGTTCCAGGATTACTGCTAGACAAATGGAAGTTAAGGTTCGTAGAGGAGGAAACCTGCTTCATGTTTTCCCATCGGATGTGGTGCCAGGTGACATAGTATGCTTGGAATTGGGATCTCTAGTTCCTGCTGATGGTTTGTTCGTTTTCACTGGTGAATCATTACTGTTGGAAGATGGTATGGATTTTCCAACCGTGGATGATAACAATCCTTTTCTGGTTTATGGTGCAAGGGTGATAAATGGTAATGGTCGCATGTTGGTTACTTGTGTGGGGATGGGGACAACATTAGGTGAGTTGATGGGGCAAGTGAGATGTGCTCCTAACCAGGACCAATTACTAGCTCAAATGGATAAGTTGAGCACAAGGTTGCAGAATGTTGGACACTTGATCACAATTTTGACGACTCTAGTGCTATTCATCCGTTCCCTGGTTTTGAAGGATAATGAGTACCCTGGCCTCCAAGCTGATCAGCTCAAGGGTAAAATAGTTGCAAGCGAGGAGCTAATCCATGTCATTGGCAGATTTTTCATGAGATCATTTGGCGGCATTAGTGTGGCGACGTATCTGCCTTTGTTGATTGTAGGATTATCGGAAGGAGTACCTTTTTCAGTTGCACTTGCCATTACTTACTGGACTAAGGCCACACTGTTCGGGAAAGCCATAGCTCAAAGAACCTTAGCTTGTTTCGCCATGGGTTTTGTGTCAACTATATGCATTGGTGGTGGGCTAACTTCAAACCCTGTACTTGAAGTCGACATGAGCTATGATGGGAAGCAAATCATCGATATAGAGTCTGTTGCTGAAATTCACAAACACGTTCGTGAGGCTTTATACAAAGGAATTGTCGCACCGCTTATGATGCCATCAAGCCCTTGTAGCTCAACAGAACACCAACTCCTGCTTCCTTGGGCCAAATCTAATCTGGGTCTGGACAATGAGAATTTGTTGCAAAGTTGCACCATTGAGAAGAGCGAGAAGTTGAGCAGCGATGAGGAGGCCAGTAGAGTTCTGATGAAGGACAGTGAAACTGTAGATATGTGCTTGTACTGGAGTGGACCTGAAACAACAATATTACCCATGTGTTCAGAATATTATGACAGCAATGGAACAACAAAGCTCATGGATGAACAGAAGAAACGTGATTTTAAAGAAAGTATAAGTAACATGCAGTCCAAACATCTCAAGACCATTGCATTTGCACACAAGAAGATCGATGCTCTAATGCCTGAAGAAGAAGACCAAAGCTTAATATTGATAGCACTGCTGGGTGTGAATAAGGGTTTCACTGAGACAATGGAAGCACTGGAAGTTCTACGAAAAGCGGGGGTGGATGTCATAGAGTTCCCAAAAGATACCGAATCAGTACTGTCAGAAGGTGAAAGTCCAATCTACGGAATGGGGAGGCCTTCTGACAAGCTTCACACAGTGCAACGTTTGAAAGACAGGGGCCATGTTGTGACAATGGTTGGGACTAGAACAAATGAGACTCCAGCTATAAAAGAAGCAGATGTGGGGATTGCAATGGGGACTTCCATTAGTGAAATGGCTAGAGAGGGTTCAGATCTCATCATCCACTGCGGCAGCCTCAGTTTCTTGGTCGACATTATTCGGACAGGAAGATGCATTCACTACAACATCCAAAAGTACATCCAAGTTGAGCTCACCACGAATATATCAGTGCTTATGATAATATTGGTTACTACAATATCTATGGGACACTGCACAATTGGGGCATTTGAAGCACTGTGGGCAACTATTTTTGTGACGGTATGCGCGCTTGCGTTACTGCTTGAGCCGCCAACAGAAGAGTTGATGGAAAAGACGCCGATAAAACAAACTGAATCTCTCATTAGCAAGCATATGTGGAGAAACATATTACTTCAAGCTTTGTATCAGGCTTCTATATCGGTTGCCTTACAGCTCAAATGGAAAGCTCTCCCAGGCATCAACGAGAAGACCATGGAGTCCATTGTTTTCAACAGTTATGTTCTTTGTCAGGTATTTAACCTAGTCAGTGCAAGGGAGCCAGAGAAGAAAAATATTTTCAGAGGTATACTTCGAACTCCATGGTTATGGGTGGCTGTGGCCATTAGTATCCCCATGCAGGTGACTTTTATTGAGATTGCACACAAGGCTGCTGGCAATGCAAGGTTGGATTGGGGACAATGGGGCGTCTGTCTTCTAGTAGCGATGGTTTCCTGGTTAATCGATTTGGCTGGCAAATGTGTATGGGGTGTCATTGTGAAGAATAGAATTACAATCGGCTCTGATATTGGATCCACCAGTATGAGTTCAGCTGCCGCCTCAAAATCAGCTTCTAGTCGGGAGCTCCTAGCAAGCACTCATGCACATTGTTCCAAATCCGGCCAGGAGAATCTTATTTTGTCAAAATTAATGATTCGTTGTTGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

999

Amino Acids

109.44

Weight (kDa)

5.67

Isoelectric Point (pI)

37.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	203 - 297	3e-08	P-type ATPase actuator domain
Cation_ATPase	PF13246	502 - 617	1.4e-06	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	776 - 935	8.9e-34	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2677
AasI	GACNNNNNNGTC	1 cut(s)	2545
Acc16I	TGCGCA	2 cut(s)	60, 563
Acc36I	ACCTGC	2 cut(s)	645, 2677
AccB1I	GGYRCC	1 cut(s)	664
AccI	GTMKAC	5 cut(s)	53, 554, 1335, 2181, 2635
AccII	CGCG	1 cut(s)	2357
AciI	CCGC	7 cut(s)	498, 1125, 1433, 1904, 2160, 2378, 2883
AclI	AACGTT	1 cut(s)	2014
AclWI	GGATC	5 cut(s)	196, 448, 703, 2853, 2866
AcoI	YGGCCR	2 cut(s)	2667, 2947
AcsI	RAATTY	2 cut(s)	1386, 1522
AcuI	CTGAAG	2 cut(s)	108, 1830
AcvI	CACGTG	1 cut(s)	71
AcyI	GRCGYC	2 cut(s)	2405, 2754
AdeI	CACNNNGTG	1 cut(s)	2008
AfaI	GTAC	7 cut(s)	298, 1031, 1182, 1326, 1628, 1947, 2228
AfeI	AGCGCT	1 cut(s)	139
AfiI	CCNNNNNNNGG	7 cut(s)	326, 442, 497, 713, 1009, 1973, 2686
AflIII	ACRYGT	1 cut(s)	1396
AjuI	GAANNNNNNNTTGG	4 cut(s)	501, 533, 1467, 1499
AleI	CACNNNNGTG	1 cut(s)	1401
AloI	GAACNNNNNNTCC	4 cut(s)	687, 719, 1461, 1493
Alw21I	GWGCWC	5 cut(s)	76, 901, 944, 2244, 2913
Alw26I	GTCTC	4 cut(s)	228, 367, 1865, 2060
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	5 cut(s)	196, 448, 703, 2853, 2866
Aor51HI	AGCGCT	1 cut(s)	139
AoxI	GGCC	9 cut(s)	487, 1036, 1221, 1491, 1578, 1985, 2029, 2667, 2947
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	4 cut(s)	1566, 2163, 2717, 2879
ApoI	RAATTY	2 cut(s)	1386, 1522
ArsI	GACNNNNNNTTYG	4 cut(s)	227, 259, 1410, 1442
AseI	ATTAAT	1 cut(s)	2975
AspLEI	GCGC	5 cut(s)	61, 140, 564, 2357, 2359
AspS9I	GGNCC	6 cut(s)	426, 488, 910, 1491, 1637, 2029
AsuHPI	GGTGA	9 cut(s)	71, 335, 683, 746, 826, 884, 1970, 2236, 2701
AsuII	TTCGAA	1 cut(s)	2641
AvaII	GGWCC	3 cut(s)	426, 910, 1637
BaeGI	GKGCMC	1 cut(s)	76
BalI	TGGCCA	1 cut(s)	2669
BamHI	GGATCC	1 cut(s)	2858
BanI	GGYRCC	1 cut(s)	664
BanII	GRGCYC	2 cut(s)	2244, 2913
BbrPI	CACGTG	1 cut(s)	71
BbsI	GAAGAC	3 cut(s)	1824, 2543, 2753
Bbv12I	GWGCWC	5 cut(s)	76, 901, 944, 2244, 2913
BbvI	GCAGC	4 cut(s)	1578, 2175, 2704, 2866
BcgI	CGANNNNNNTGC	6 cut(s)	263, 297, 973, 1007, 1129, 1163
BciVI	GTATCC	2 cut(s)	485, 2687
BclI	TGATCA	3 cut(s)	343, 969, 1048
BcoDI	GTCTC	4 cut(s)	228, 367, 1865, 2060
BfmI	CTRYAG	1 cut(s)	1611
BfoI	RGCGCY	1 cut(s)	141
BfuAI	ACCTGC	2 cut(s)	645, 2677
BfuI	GTATCC	2 cut(s)	485, 2687
BglII	AGATCT	1 cut(s)	2143
BisI	GCNGC	8 cut(s)	1126, 1567, 2161, 2164, 2378, 2718, 2880, 2883
BlsI	GCNGC	8 cut(s)	1127, 1568, 2162, 2165, 2379, 2719, 2881, 2884
BmcAI	AGTACT	1 cut(s)	1947
Bme18I	GGWCC	3 cut(s)	426, 910, 1637
BmgT120I	GGNCC	6 cut(s)	426, 488, 910, 1491, 1637, 2029
BmiI	GGNNCC	4 cut(s)	666, 2030, 2607, 2860
BmsI	GCATC	5 cut(s)	279, 1431, 1786, 2192, 2535
BpiI	GAAGAC	3 cut(s)	1824, 2543, 2753
BplI	GAGNNNNNCTC	2 cut(s)	883, 915
BpmI	CTGGAG	2 cut(s)	1651, 2055
Bpu10I	CCTNAGC	1 cut(s)	1258
Bpu14I	TTCGAA	1 cut(s)	2641
BpuEI	CTTGAG	3 cut(s)	1040, 1748, 2393
Bsa29I	ATCGAT	3 cut(s)	1365, 1794, 2790
BsaAI	YACGTR	1 cut(s)	71
BsaBI	GATNNNNATC	1 cut(s)	786
BsaHI	GRCGYC	2 cut(s)	2405, 2754
BsaJI	CCNNGG	9 cut(s)	319, 774, 1008, 1033, 1272, 1487, 2521, 2541, 2648
BsaXI	ACNNNNNCTCC	4 cut(s)	361, 391, 1461, 1491
Bsc4I	CCNNNNNNNGG	7 cut(s)	326, 442, 497, 713, 1009, 1973, 2686
Bse1I	ACTGG	6 cut(s)	736, 1217, 1581, 1634, 1890, 2865
Bse3DI	GCAATG	4 cut(s)	1690, 1770, 2109, 2731
Bse8I	GATNNNNATC	1 cut(s)	786
BseCI	ATCGAT	3 cut(s)	1365, 1794, 2790
BseDI	CCNNGG	9 cut(s)	319, 774, 1008, 1033, 1272, 1487, 2521, 2541, 2648
BseJI	GATNNNNATC	1 cut(s)	786
BseLI	CCNNNNNNNGG	7 cut(s)	326, 442, 497, 713, 1009, 1973, 2686
BseMI	GCAATG	4 cut(s)	1690, 1770, 2109, 2731
BseMII	CTCAG	3 cut(s)	12, 1860, 2182
BseNI	ACTGG	6 cut(s)	736, 1217, 1581, 1634, 1890, 2865
BsePI	GCGCGC	1 cut(s)	2355
BseRI	GAGGAG	3 cut(s)	642, 1094, 1589
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	4 cut(s)	1578, 2175, 2704, 2866
BseYI	CCCAGC	1 cut(s)	1846
BsgI	GTGCAG	2 cut(s)	375, 2287
Bsh1236I	CGCG	1 cut(s)	2357
BshFI	GGCC	9 cut(s)	489, 1038, 1223, 1493, 1580, 1987, 2031, 2669, 2949
BshNI	GGYRCC	1 cut(s)	664
BshVI	ATCGAT	3 cut(s)	1365, 1794, 2790
BsiHKAI	GWGCWC	5 cut(s)	76, 901, 944, 2244, 2913
BsiSI	CCGG	1 cut(s)	2946
BslFI	GGGAC	5 cut(s)	874, 2065, 2122, 2310, 2757
BslI	CCNNNNNNNGG	7 cut(s)	326, 442, 497, 713, 1009, 1973, 2686
BsmAI	GTCTC	4 cut(s)	228, 367, 1865, 2060
BsmFI	GGGAC	5 cut(s)	874, 2065, 2122, 2310, 2757
BsmI	GAATGC	1 cut(s)	2205
BsnI	GGCC	9 cut(s)	489, 1038, 1223, 1493, 1580, 1987, 2031, 2669, 2949
Bsp119I	TTCGAA	1 cut(s)	2641
Bsp1286I	GDGCHC	5 cut(s)	76, 901, 944, 2244, 2913
Bsp19I	CCATGG	3 cut(s)	1272, 2541, 2648
BspACI	CCGC	7 cut(s)	498, 1125, 1433, 1904, 2160, 2378, 2883
BspANI	GGCC	9 cut(s)	489, 1038, 1223, 1493, 1580, 1987, 2031, 2669, 2949
BspCNI	CTCAG	3 cut(s)	13, 1861, 2181
BspDI	ATCGAT	3 cut(s)	1365, 1794, 2790
BspFNI	CGCG	1 cut(s)	2357
BspHI	TCATGA	2 cut(s)	340, 1110
BspLI	GGNNCC	4 cut(s)	666, 2030, 2607, 2860
BspMI	ACCTGC	2 cut(s)	645, 2677
BspPI	GGATC	5 cut(s)	196, 448, 703, 2853, 2866
BspQI	GCTCTTC	1 cut(s)	1544
BspT104I	TTCGAA	1 cut(s)	2641
BspT107I	GGYRCC	1 cut(s)	664
BsrDI	GCAATG	4 cut(s)	1690, 1770, 2109, 2731
BsrI	ACTGG	6 cut(s)	736, 1217, 1581, 1634, 1890, 2865
BssECI	CCNNGG	9 cut(s)	319, 774, 1008, 1033, 1272, 1487, 2521, 2541, 2648
BssHII	GCGCGC	1 cut(s)	2355
BssNAI	GTATAC	2 cut(s)	54, 2636
BssNI	GRCGYC	2 cut(s)	2405, 2754
BssT1I	CCWWGG	4 cut(s)	1272, 1487, 2541, 2648
Bst1107I	GTATAC	2 cut(s)	54, 2636
Bst6I	CTCTTC	2 cut(s)	1544, 2382
BstACI	GRCGYC	2 cut(s)	2405, 2754
BstBAI	YACGTR	1 cut(s)	71
BstBI	TTCGAA	1 cut(s)	2641
BstC8I	GCNNGC	8 cut(s)	210, 1075, 2357, 2361, 2438, 2722, 2800, 2920
BstDEI	CTNAG	6 cut(s)	21, 198, 1218, 1258, 1869, 2168
BstDSI	CCRYGG	4 cut(s)	774, 1272, 2541, 2648
BstFNI	CGCG	1 cut(s)	2357
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	5 cut(s)	61, 140, 564, 2357, 2359
BstMAI	GTCTC	4 cut(s)	228, 367, 1865, 2060
BstNSI	RCATGY	3 cut(s)	212, 838, 1750
BstSFI	CTRYAG	1 cut(s)	1611
BstSLI	GKGCMC	1 cut(s)	76
BstUI	CGCG	1 cut(s)	2357
BstV1I	GCAGC	4 cut(s)	1578, 2175, 2704, 2866
BstV2I	GAAGAC	3 cut(s)	1824, 2543, 2753
BstX2I	RGATCY	4 cut(s)	201, 695, 2143, 2858
BstXI	CCANNNNNNTGG	2 cut(s)	1097, 2655
BstYI	RGATCY	4 cut(s)	201, 695, 2143, 2858
BstZ17I	GTATAC	2 cut(s)	54, 2636
Bsu15I	ATCGAT	3 cut(s)	1365, 1794, 2790
BsuI	GTATCC	2 cut(s)	485, 2687
BsuRI	GGCC	9 cut(s)	489, 1038, 1223, 1493, 1580, 1987, 2031, 2669, 2949
BsuTUI	ATCGAT	3 cut(s)	1365, 1794, 2790
BtgI	CCRYGG	4 cut(s)	774, 1272, 2541, 2648
BtgZI	GCGATG	3 cut(s)	112, 1584, 2786
BtsI	GCAGTG	3 cut(s)	1841, 2155, 2299
BveI	ACCTGC	2 cut(s)	645, 2677
Cac8I	GCNNGC	8 cut(s)	210, 1075, 2357, 2361, 2438, 2722, 2800, 2920
CciI	TCATGA	2 cut(s)	340, 1110
CfoI	GCGC	5 cut(s)	61, 140, 564, 2357, 2359
Cfr13I	GGNCC	6 cut(s)	426, 488, 910, 1491, 1637, 2029
ClaI	ATCGAT	3 cut(s)	1365, 1794, 2790
CseI	GACGC	2 cut(s)	2413, 2743
Csp6I	GTAC	7 cut(s)	297, 1030, 1181, 1325, 1627, 1946, 2227
CviQI	GTAC	7 cut(s)	297, 1030, 1181, 1325, 1627, 1946, 2227
DdeI	CTNAG	6 cut(s)	21, 198, 1218, 1258, 1869, 2168
DraI	TTTAAA	1 cut(s)	1729
DraIII	CACNNNGTG	1 cut(s)	2008
DrdI	GACNNNNNNGTC	1 cut(s)	2545
DseDI	GACNNNNNNGTC	1 cut(s)	2545
EaeI	YGGCCR	2 cut(s)	2667, 2947
Eam1104I	CTCTTC	2 cut(s)	1544, 2382
EarI	CTCTTC	2 cut(s)	1544, 2382
Ecl136II	GAGCTC	2 cut(s)	2242, 2911
Eco130I	CCWWGG	4 cut(s)	1272, 1487, 2541, 2648
Eco147I	AGGCCT	1 cut(s)	1987
Eco24I	GRGCYC	2 cut(s)	2244, 2913
Eco47I	GGWCC	3 cut(s)	426, 910, 1637
Eco47III	AGCGCT	1 cut(s)	139
Eco53kI	GAGCTC	2 cut(s)	2242, 2911
Eco57I	CTGAAG	2 cut(s)	108, 1830
Eco72I	CACGTG	1 cut(s)	71
EcoICRI	GAGCTC	2 cut(s)	2242, 2911
EcoT14I	CCWWGG	4 cut(s)	1272, 1487, 2541, 2648
EcoT22I	ATGCAT	2 cut(s)	1298, 2207
EcoT38I	GRGCYC	2 cut(s)	2244, 2913
ErhI	CCWWGG	4 cut(s)	1272, 1487, 2541, 2648
FalI	AAGNNNNNCTT	2 cut(s)	557, 589
FaqI	GGGAC	5 cut(s)	874, 2065, 2122, 2310, 2757
FauI	CCCGC	1 cut(s)	1897
FauNDI	CATATG	1 cut(s)	2442
FbaI	TGATCA	3 cut(s)	343, 969, 1048
FblI	GTMKAC	5 cut(s)	53, 554, 1335, 2181, 2635
Fnu4HI	GCNGC	8 cut(s)	1126, 1567, 2161, 2164, 2378, 2718, 2880, 2883
FriOI	GRGCYC	2 cut(s)	2244, 2913
Fsp4HI	GCNGC	8 cut(s)	1126, 1567, 2161, 2164, 2378, 2718, 2880, 2883
FspI	TGCGCA	2 cut(s)	60, 563
GlaI	GCGC	5 cut(s)	60, 139, 563, 2356, 2358
GluI	GCNGC	8 cut(s)	1126, 1567, 2161, 2164, 2378, 2718, 2880, 2883
GsaI	CCCAGC	1 cut(s)	1850
GsuI	CTGGAG	2 cut(s)	1651, 2055
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	9 cut(s)	489, 1038, 1223, 1493, 1580, 1987, 2031, 2669, 2949
HapII	CCGG	1 cut(s)	2946
HgaI	GACGC	2 cut(s)	2413, 2743
HhaI	GCGC	5 cut(s)	61, 140, 564, 2357, 2359
Hin1I	GRCGYC	2 cut(s)	2405, 2754
Hin6I	GCGC	5 cut(s)	59, 138, 562, 2355, 2357
HinP1I	GCGC	5 cut(s)	59, 138, 562, 2355, 2357
HincII	GTYRAC	3 cut(s)	1287, 1336, 2182
HindII	GTYRAC	3 cut(s)	1287, 1336, 2182
HindIII	AAGCTT	4 cut(s)	388, 1825, 1997, 2466
HpaII	CCGG	1 cut(s)	2946
HphI	GGTGA	9 cut(s)	71, 335, 683, 746, 826, 884, 1970, 2236, 2701
Hpy166II	GTNNAC	8 cut(s)	54, 74, 555, 1287, 1336, 1637, 2182, 2636
Hpy188III	TCNNGA	7 cut(s)	341, 1111, 1234, 1403, 1511, 1765, 2906
Hpy8I	GTNNAC	8 cut(s)	54, 74, 555, 1287, 1336, 1637, 2182, 2636
Hpy99I	CGWCG	1 cut(s)	1144
HpyCH4IV	ACGT	7 cut(s)	50, 70, 583, 1142, 1398, 1720, 2014
HpyF3I	CTNAG	6 cut(s)	21, 198, 1218, 1258, 1869, 2168
HpySE526I	ACGT	7 cut(s)	50, 70, 583, 1142, 1398, 1720, 2014
Hsp92I	GRCGYC	2 cut(s)	2405, 2754
HspAI	GCGC	5 cut(s)	59, 138, 562, 2355, 2357
Ksp22I	TGATCA	3 cut(s)	343, 969, 1048
LguI	GCTCTTC	1 cut(s)	1544
LmnI	GCTCC	8 cut(s)	382, 512, 521, 904, 1081, 2605, 2908, 2916
Lsp1109I	GCAGC	4 cut(s)	1578, 2175, 2704, 2866
LweI	GCATC	5 cut(s)	279, 1431, 1786, 2192, 2535
MaeII	ACGT	7 cut(s)	50, 70, 583, 1142, 1398, 1720, 2014
MaeIII	GTNAC	9 cut(s)	323, 671, 841, 1742, 2038, 2278, 2344, 2364, 2689
MfeI	CAATTG	2 cut(s)	421, 2307
MflI	RGATCY	4 cut(s)	201, 695, 2143, 2858
MhlI	GDGCHC	5 cut(s)	76, 901, 944, 2244, 2913
MlsI	TGGCCA	1 cut(s)	2669
MluNI	TGGCCA	1 cut(s)	2669
MlyI	GAGTC	4 cut(s)	979, 1382, 2062, 2555
MmeI	TCCRAC	7 cut(s)	404, 499, 502, 729, 794, 940, 2715
Mox20I	TGGCCA	1 cut(s)	2669
Mph1103I	ATGCAT	2 cut(s)	1298, 2207
MscI	TGGCCA	1 cut(s)	2669
MseI	TTAA	7 cut(s)	461, 615, 1728, 1829, 2586, 2786, 2975
MslI	CAYNNNNRTG	6 cut(s)	542, 1133, 1401, 2653, 2687, 2867
Msp20I	TGGCCA	1 cut(s)	2669
MspA1I	CMGCKG	1 cut(s)	2879
MspI	CCGG	1 cut(s)	2946
MunI	CAATTG	2 cut(s)	421, 2307
Mva1269I	GAATGC	1 cut(s)	2205
MvnI	CGCG	1 cut(s)	2357
NcoI	CCATGG	3 cut(s)	1272, 2541, 2648
NdeI	CATATG	1 cut(s)	2442
NlaIV	GGNNCC	4 cut(s)	666, 2030, 2607, 2860
NmuCI	GTSAC	5 cut(s)	323, 671, 2038, 2344, 2689
NsbI	TGCGCA	2 cut(s)	60, 563
NsiI	ATGCAT	2 cut(s)	1298, 2207
NspI	RCATGY	3 cut(s)	212, 838, 1750
NspV	TTCGAA	1 cut(s)	2641
OliI	CACNNNNGTG	1 cut(s)	1401
PaeI	GCATGC	1 cut(s)	212
PagI	TCATGA	2 cut(s)	340, 1110
PaqCI	CACCTGC	1 cut(s)	2677
PauI	GCGCGC	1 cut(s)	2355
PceI	AGGCCT	1 cut(s)	1987
PciSI	GCTCTTC	1 cut(s)	1544
PctI	GAATGC	1 cut(s)	2205
PfeI	GAWTC	7 cut(s)	160, 315, 737, 1940, 2423, 2956, 2980
PfoI	TCCNGGA	1 cut(s)	587
PkrI	GCNGC	8 cut(s)	1127, 1568, 2162, 2165, 2379, 2719, 2881, 2884
PleI	GAGTC	4 cut(s)	979, 1381, 2062, 2554
PmaCI	CACGTG	1 cut(s)	71
PmlI	CACGTG	1 cut(s)	71
PpsI	GAGTC	4 cut(s)	979, 1381, 2062, 2554
Ppu21I	YACGTR	1 cut(s)	71
PshBI	ATTAAT	1 cut(s)	2975
Psp124BI	GAGCTC	2 cut(s)	2244, 2913
Psp1406I	AACGTT	1 cut(s)	2014
PspCI	CACGTG	1 cut(s)	71
PspFI	CCCAGC	1 cut(s)	1846
PspN4I	GGNNCC	4 cut(s)	666, 2030, 2607, 2860
PspPI	GGNCC	6 cut(s)	426, 488, 910, 1491, 1637, 2029
PsuI	RGATCY	4 cut(s)	201, 695, 2143, 2858
PteI	GCGCGC	1 cut(s)	2355
PvuII	CAGCTG	1 cut(s)	2879
RsaI	GTAC	7 cut(s)	298, 1031, 1182, 1326, 1628, 1947, 2228
RsaNI	GTAC	7 cut(s)	297, 1030, 1181, 1325, 1627, 1946, 2227
RseI	CAYNNNNRTG	6 cut(s)	542, 1133, 1401, 2653, 2687, 2867
SacI	GAGCTC	2 cut(s)	2244, 2913
SalI	GTCGAC	2 cut(s)	1334, 2180
SapI	GCTCTTC	1 cut(s)	1544
SaqAI	TTAA	7 cut(s)	461, 615, 1728, 1829, 2586, 2786, 2975
SatI	GCNGC	8 cut(s)	1126, 1567, 2161, 2164, 2378, 2718, 2880, 2883
Sau96I	GGNCC	6 cut(s)	426, 488, 910, 1491, 1637, 2029
ScaI	AGTACT	1 cut(s)	1947
SchI	GAGTC	4 cut(s)	979, 1382, 2062, 2555
SduI	GDGCHC	5 cut(s)	76, 901, 944, 2244, 2913
SfaNI	GCATC	5 cut(s)	279, 1431, 1786, 2192, 2535
SfcI	CTRYAG	1 cut(s)	1611
SfuI	TTCGAA	1 cut(s)	2641
SinI	GGWCC	3 cut(s)	426, 910, 1637
SmiMI	CAYNNNNRTG	6 cut(s)	542, 1133, 1401, 2653, 2687, 2867
SmlI	CTYRAG	3 cut(s)	1055, 1763, 2372
SmoI	CTYRAG	3 cut(s)	1055, 1763, 2372
SphI	GCATGC	1 cut(s)	212
SseBI	AGGCCT	1 cut(s)	1987
SsiI	CCGC	7 cut(s)	498, 1125, 1433, 1904, 2160, 2378, 2883
SspI	AATATT	5 cut(s)	1653, 1673, 1833, 2274, 2623
SstI	GAGCTC	2 cut(s)	2244, 2913
StuI	AGGCCT	1 cut(s)	1987
StyI	CCWWGG	4 cut(s)	1272, 1487, 2541, 2648
TaiI	ACGT	7 cut(s)	53, 73, 586, 1145, 1401, 1723, 2017
TaqI	TCGA	7 cut(s)	273, 1335, 1365, 1794, 2181, 2641, 2790
TatI	WGTACW	4 cut(s)	1324, 1626, 1945, 2226
TauI	GCSGC	4 cut(s)	1128, 2163, 2380, 2885
TfiI	GAWTC	7 cut(s)	160, 315, 737, 1940, 2423, 2956, 2980
Tru1I	TTAA	7 cut(s)	461, 615, 1728, 1829, 2586, 2786, 2975
Tru9I	TTAA	7 cut(s)	461, 615, 1728, 1829, 2586, 2786, 2975
TseFI	GTSAC	5 cut(s)	323, 671, 2038, 2344, 2689
TseI	GCWGC	4 cut(s)	1566, 2163, 2717, 2879
Tsp45I	GTSAC	5 cut(s)	323, 671, 2038, 2344, 2689
TspDTI	ATGAA	6 cut(s)	329, 632, 988, 1099, 1610, 1722
TspGWI	ACGGA	4 cut(s)	327, 342, 992, 1989
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	3 cut(s)	426, 910, 1637
VspI	ATTAAT	1 cut(s)	2975
XapI	RAATTY	2 cut(s)	1386, 1522
XceI	RCATGY	3 cut(s)	212, 838, 1750
XcmI	CCANNNNNNNNNTGG	3 cut(s)	498, 1501, 2122
XmiI	GTMKAC	5 cut(s)	53, 554, 1335, 2181, 2635
ZrmI	AGTACT	1 cut(s)	1947
Zsp2I	ATGCAT	2 cut(s)	1298, 2207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.