Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

581380 .. 586689

Gene Structure 5310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG009000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3057 bp

ATGGACATGTCAAAGGACAATCCAGGTGGAGTCGATCATAAGGACCTTGAATCTCAGCAAACAGTGTCAAAAGAGCTTGAACTGGTGCCCATTGATCCTAACCGCCGCTGGCGTACGATTGTGCTGATCCTTCAGGCACGCCATATTTTCATCACCTTAGCAGCTGCTAAAAATCCTGAACTTGGATCTCTTACAGGAGACTTGGAAGTAACTATAAGTACCCCTAATCCTACACCACCTGAAGGGGTTACCGCCAATGTATATTCCGACAACCCCAATGACAGTGAATATCAGCTCCAGTTTGCCACCATTTCCAACATCATAAAGACAAAGGATTTAACATCCTTACGTGACTTTGGAGGTGCCCAAGCATTTGCAGAGGCTCTCGGTAGTGATTTGGAGACTGGGATCCCCACCAACGATGAAGCTATTTGTTGTCGGCTCAAATCCACGACAAATTCCACTACTCCTGAACAGGCTGCTGCAAGAGGCTTCATTCAGCTAGCCAAAATATATTGCAACAGTTACATGATTCTCTTGCTTTTCGTGGCTGCTGTGCTCTCACTTTGCTTTGGAATCGTGGAGGAAGGCCCGACGACTGGTTGGTTTGAAGGGGCCATCATACTCGATGCCATTATCATGCTCGTGGTTCTTCCTTCCATACGTGATTATTGGCGGGAATCTAAAGGGTTGTCCGGGAGGCAAAAACTGTTGGAGAACACAGATGAAGTGGAGGTTGAGGTCTTAAGAGGCGGAAATGAGGAGAAGATCTCCTCATCAGATATTTTGTTTGGTGACATCGTGTGCTTGAAGAGAGGACATCAAGTTCCTGCTGATGGTATATTCATATCAGGAGGTTTCGTAGTCTTGGATGATCAATTAGGGGCAGTAGTTGATGCCGATAACCCTTTTCTCTTCTATGGAGCGGAAGTGATAGATGGCAATGGTCGCATGCTTGTGACATCTGTGGGTGTAAACACAGTGTGGGGTGACATGATGAGCAGCATAAACCATTTGAAGAAGACACCATTAGAGGCACAACTTGACAGGGTGAACACTTGTATGCAGATCATTGGTCTCCTAATCTCTATCCTGATCCTTGTGGTGTTGTTCTTGCGTTTTGAACTCAAAAAAGAACTGCACACCGGAGCATCCATGGATCTAAGGGGAGAGCCAACTAAAATGAACATGTTTATGGATGCCATCAAGAAAATTGTCATGAAACCAAGCGGAAAGATTAGCATCTTGACAACTTCTCTTACGGTGATGCTGGTTGGGATAGTAGAAGGGTTACCTTTCTGTATCAACCTTGCCATCATTTACTGGAACAGGAAGGCTTTGAATGGGATGGCCTCTCTTCAACACCTGTTGGCCTGTGTCACCATGGCTTCTGTTACATCTATCTGCACAGACAAAAACGGTGGGCTAACATTGGATTCAATGGAAGTTGACATGTGCTGGATTGGAGAACAAGTTATGGCTGAAAATTCTGTTATAGCCTCAAATGTCCTCGAAGCTTTTCGTGATGGAATCAGCATGCTCCTTCTCTCGCAGCCTCCTCCTTATACCTCAATAGAAGACCCTGTCATTTCCTGGGCGGCACTGAAGTTGGGCATGGAATTGGAAATTGTGAGGCAGAGTAATACCGTTGTCGAGGATAAAGAATTGACCACTGATCAGGAAGGAAGAGGAGCAATGATGCAGAAGAACAGAGACAGTGAAAGAGAAAGAATGTACTTGCATTGCAGAGGACCTGCTACAAGTATTTTGCCCATTTGTTCACACTACCATGACTGTGAAGGGATGATCAACGTCATCGAAGAACGAAACAGGGTGACTTTTCATAGAAATGTCGAGGATATGCAGTCCAAGCATCTTAAAACCATGGCATTTGCGTACAAGGAAATTGATGTCCCAACAATGGAAGAAAGAGATCTGATATTGCTGGGACTGGTTGGTCTGAAGTCATGTTTGGAAAAGATGAGGGAATCAATCAGAGCCATAAGAAACGCTGGAGTCAATATCATACTGGTTTCCGGAGATGATGTGCAGACACTAGTGAGCATAGCTGAGCATTTCAGAATTCAGGGGGTGCCGATTTCAAATGAAATGGTGACCACAGGTGAAAAGTTCAGGAATTGCAGTGAAGAAGACAGGATGAAGATGGTAAGTGAAATTTCAGTGATGGGAAACTCACTCCCCTCCGACAAGCTTCTTCTGGTTAAGTGTTTGAAGCAAAAAGGGGAAACAGTAGCAGTCATTGGAGTTAAAACGAATGAGGCTCCTGCACTGAAAGAAGCTGATGTTGGACTTACAATGGGAATATGGGCCACCAAAATGGCTAAAGCGAGTTCAGACATCATCGTAAGGGTTGCAGATATCAGTTGCCTGGTAAGTATCCTCAGGCATGGAAGATGTGCTTATTACAACATTCAAAAGTACATTCAACTTGAGCTTACTATAGTCGCCGCAGGGCTTTTAGTAACATTTATCATAGCAGCATCTACAGGAAATATGCCCATAACAAGTATCCAATTGTTCTGGGTAAATTTGGTAGTGCCAATGCTGGGCGGCCTGGCTCTATTGACAGAGCTCCCAAGAAAGAAGTTAATGGAGAAATCACAATCTGGACAAACCAAAGCAATTATTACCATGGCCATGTGCAGAAATATAATAATCCAAGCTTCATATCAAGCTGTTACTATAGTCACCTTCCATTTCAAAGGACAAGCAATCTTGGGTGTTGATGAAAAGGTTCGCAAGACTATCATCTTCAATAGTTTTGTCATCTGCCAGATTTTTAACAAGTTCAGTGCGAGAGAGCTGGTAAAGAAAAATGTGTTTAAGGCGATCCACAAGAACCAATGGTTTTGGGTGGCTTTGGCTGCAATCCTAGTGCTACAGCTGAGTTTTATTGAGATTTCACATGTGGTTGTTGGCGATGCAAGGCTGAGCTTGGTGCACTGGGGTTTCTGCCTTCTTATTGGGATTGTTTCACTAGGGATGGATATAGCTGCAAAGGGCATATATGATTATTTGTCTTCTTTCGTCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1018

Amino Acids

112.31

Weight (kDa)

5.63

Isoelectric Point (pI)

32.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	244 - 336	4.8e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	534 - 655	6.6e-09	P-type ATPase, cytoplasmic domain N
Hydrolase	PF00702	649 - 768	5.7e-06	haloacid dehalogenase-like hydrolase
Cation_ATPase_C	PF00689	839 - 1007	1.3e-32	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1956
Acc36I	ACCTGC	1 cut(s)	1762
AccB1I	GGYRCC	3 cut(s)	85, 362, 2092
AccBSI	CCGCTC	1 cut(s)	926
AccIII	TCCGGA	1 cut(s)	2036
AclWI	GGATC	8 cut(s)	89, 121, 193, 403, 416, 1090, 1167, 2845
AcoI	YGGCCR	1 cut(s)	2655
AcsI	RAATTY	5 cut(s)	457, 1486, 2082, 2175, 2548
AcuI	CTGAAG	4 cut(s)	116, 261, 1625, 1982
AdeI	CACNNNGTG	1 cut(s)	984
AfaI	GTAC	5 cut(s)	115, 220, 1736, 1898, 2441
AfiI	CCNNNNNNNGG	6 cut(s)	182, 242, 599, 836, 1921, 2567
AflII	CTTAAG	1 cut(s)	745
AflIII	ACRYGT	4 cut(s)	6, 1188, 1452, 2926
AhlI	ACTAGT	1 cut(s)	2056
AjnI	CCWGG	4 cut(s)	22, 1592, 2388, 2574
AjuI	GAANNNNNNNTTGG	4 cut(s)	1955, 1987, 2289, 2321
AloI	GAACNNNNNNTCC	2 cut(s)	810, 842
Alw21I	GWGCWC	3 cut(s)	561, 2595, 2964
Alw26I	GTCTC	4 cut(s)	192, 395, 1082, 1707
Alw44I	GTGCAC	1 cut(s)	2960
AlwI	GGATC	8 cut(s)	89, 121, 193, 403, 416, 1090, 1167, 2845
Aor13HI	TCCGGA	1 cut(s)	2036
AoxI	GGCC	7 cut(s)	589, 615, 1350, 1371, 2328, 2572, 2655
ApaLI	GTGCAC	1 cut(s)	2960
ApoI	RAATTY	5 cut(s)	457, 1486, 2082, 2175, 2548
Asp700I	GAANNNNTTC	2 cut(s)	1518, 2754
AspS9I	GGNCC	5 cut(s)	43, 590, 615, 1751, 2328
AsuC2I	CCSGG	1 cut(s)	697
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	2 cut(s)	43, 1751
AxyI	CCTNAGG	1 cut(s)	2402
BaeGI	GKGCMC	3 cut(s)	90, 367, 2964
BalI	TGGCCA	1 cut(s)	2657
BamHI	GGATCC	1 cut(s)	408
BanI	GGYRCC	3 cut(s)	85, 362, 2092
BanII	GRGCYC	1 cut(s)	2595
BauI	CACGAG	1 cut(s)	644
BbsI	GAAGAC	4 cut(s)	1028, 1584, 2157, 3033
Bbv12I	GWGCWC	3 cut(s)	561, 2595, 2964
BciT130I	CCWGG	4 cut(s)	24, 1594, 2390, 2576
BciVI	GTATCC	2 cut(s)	2408, 2540
BclI	TGATCA	3 cut(s)	874, 1675, 1806
BcnI	CCSGG	1 cut(s)	697
BcoDI	GTCTC	4 cut(s)	192, 395, 1082, 1707
BcuI	ACTAGT	1 cut(s)	2056
BfaI	CTAG	4 cut(s)	503, 2057, 2894, 2999
BfmI	CTRYAG	4 cut(s)	2460, 2505, 2703, 2900
BfrI	CTTAAG	1 cut(s)	745
BfuAI	ACCTGC	1 cut(s)	1762
BfuI	GTATCC	2 cut(s)	2408, 2540
BglII	AGATCT	2 cut(s)	768, 1933
BlpI	GCTNAGC	2 cut(s)	2070, 2951
Bme1390I	CCNGG	5 cut(s)	24, 697, 1594, 2390, 2576
Bme18I	GGWCC	2 cut(s)	43, 1751
BmgT120I	GGNCC	5 cut(s)	43, 590, 615, 1751, 2328
BmiI	GGNNCC	6 cut(s)	87, 364, 410, 616, 2094, 2283
BmrFI	CCNGG	5 cut(s)	24, 697, 1594, 2390, 2576
BmrI	ACTGGG	2 cut(s)	414, 2974
BmtI	GCTAGC	1 cut(s)	506
BmuI	ACTGGG	2 cut(s)	414, 2974
BpiI	GAAGAC	4 cut(s)	1028, 1584, 2157, 3033
BplI	GAGNNNNNCTC	2 cut(s)	755, 787
BpmI	CTGGAG	2 cut(s)	281, 2034
Bpu10I	CCTNAGC	1 cut(s)	157
Bpu1102I	GCTNAGC	2 cut(s)	2070, 2951
BpuEI	CTTGAG	1 cut(s)	2471
BpuMI	CCSGG	1 cut(s)	697
BsaAI	YACGTR	2 cut(s)	350, 665
BsaBI	GATNNNNATC	1 cut(s)	1241
BsaI	GGTCTC	1 cut(s)	1082
BsaJI	CCNNGG	5 cut(s)	1155, 1383, 1593, 1884, 2652
BsaWI	WCCGGW	2 cut(s)	1145, 2036
BsaXI	ACNNNNNCTCC	8 cut(s)	846, 876, 915, 945, 1458, 1488, 2031, 2061
Bsc4I	CCNNNNNNNGG	6 cut(s)	182, 242, 599, 836, 1921, 2567
Bse1I	ACTGG	8 cut(s)	87, 298, 409, 604, 1328, 1956, 2034, 2969
Bse21I	CCTNAGG	1 cut(s)	2402
Bse3DI	GCAATG	3 cut(s)	949, 1701, 1741
Bse8I	GATNNNNATC	1 cut(s)	1241
BseAI	TCCGGA	1 cut(s)	2036
BseBI	CCWGG	4 cut(s)	24, 1594, 2390, 2576
BseDI	CCNNGG	5 cut(s)	1155, 1383, 1593, 1884, 2652
BseGI	GGATG	8 cut(s)	341, 877, 1151, 1204, 1353, 1809, 2163, 3009
BseJI	GATNNNNATC	1 cut(s)	1241
BseLI	CCNNNNNNNGG	6 cut(s)	182, 242, 599, 836, 1921, 2567
BseMI	GCAATG	3 cut(s)	949, 1701, 1741
BseMII	CTCAG	5 cut(s)	68, 2061, 2416, 2897, 2942
BseNI	ACTGG	8 cut(s)	87, 298, 409, 604, 1328, 1956, 2034, 2969
BseRI	GAGGAG	4 cut(s)	763, 776, 1548, 1704
BseSI	GKGCMC	3 cut(s)	90, 367, 2964
BseYI	CCCAGC	2 cut(s)	1945, 2566
BsgI	GTGCAG	5 cut(s)	1124, 1390, 2069, 2271, 2683
BshFI	GGCC	7 cut(s)	591, 617, 1352, 1373, 2330, 2574, 2657
BshNI	GGYRCC	3 cut(s)	85, 362, 2092
BsiHKAI	GWGCWC	3 cut(s)	561, 2595, 2964
BsiSI	CCGG	3 cut(s)	696, 1146, 2037
BsiWI	CGTACG	1 cut(s)	113
BslFI	GGGAC	2 cut(s)	1898, 1962
BslI	CCNNNNNNNGG	6 cut(s)	182, 242, 599, 836, 1921, 2567
BsmAI	GTCTC	4 cut(s)	192, 395, 1082, 1707
BsmFI	GGGAC	2 cut(s)	1898, 1962
BsnI	GGCC	7 cut(s)	591, 617, 1352, 1373, 2330, 2574, 2657
Bso31I	GGTCTC	1 cut(s)	1082
Bsp1286I	GDGCHC	5 cut(s)	90, 367, 561, 2595, 2964
Bsp13I	TCCGGA	1 cut(s)	2036
Bsp1720I	GCTNAGC	2 cut(s)	2070, 2951
Bsp19I	CCATGG	4 cut(s)	1155, 1383, 1884, 2652
BspANI	GGCC	7 cut(s)	591, 617, 1352, 1373, 2330, 2574, 2657
BspCNI	CTCAG	5 cut(s)	67, 2062, 2415, 2898, 2943
BspEI	TCCGGA	1 cut(s)	2036
BspHI	TCATGA	1 cut(s)	1218
BspLI	GGNNCC	6 cut(s)	87, 364, 410, 616, 2094, 2283
BspMI	ACCTGC	1 cut(s)	1762
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	8 cut(s)	89, 121, 193, 403, 416, 1090, 1167, 2845
BspT107I	GGYRCC	3 cut(s)	85, 362, 2092
BspTI	CTTAAG	1 cut(s)	745
BspTNI	GGTCTC	1 cut(s)	1082
BsrBI	CCGCTC	1 cut(s)	926
BsrDI	GCAATG	3 cut(s)	949, 1701, 1741
BsrI	ACTGG	8 cut(s)	87, 298, 409, 604, 1328, 1956, 2034, 2969
BssECI	CCNNGG	5 cut(s)	1155, 1383, 1593, 1884, 2652
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	4 cut(s)	1155, 1383, 1884, 2652
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	4 cut(s)	24, 1594, 2390, 2576
Bst6I	CTCTTC	4 cut(s)	806, 920, 1362, 1681
BstAFI	CTTAAG	1 cut(s)	745
BstBAI	YACGTR	2 cut(s)	350, 665
BstC8I	GCNNGC	5 cut(s)	110, 139, 504, 953, 1538
BstDEI	CTNAG	7 cut(s)	54, 157, 1163, 2070, 2402, 2906, 2951
BstDSI	CCRYGG	4 cut(s)	1155, 1383, 1884, 2652
BstEII	GGTNACC	3 cut(s)	247, 1290, 2113
BstF5I	GGATG	8 cut(s)	341, 877, 1151, 1204, 1353, 1809, 2163, 3009
BstMAI	GTCTC	4 cut(s)	192, 395, 1082, 1707
BstMWI	GCNNNNNNNGC	3 cut(s)	948, 1870, 2885
BstNI	CCWGG	4 cut(s)	24, 1594, 2390, 2576
BstNSI	RCATGY	6 cut(s)	10, 955, 1192, 1456, 1540, 2930
BstPI	GGTNACC	3 cut(s)	247, 1290, 2113
BstSCI	CCNGG	5 cut(s)	22, 695, 1592, 2388, 2574
BstSFI	CTRYAG	4 cut(s)	2460, 2505, 2703, 2900
BstSLI	GKGCMC	3 cut(s)	90, 367, 2964
BstV2I	GAAGAC	4 cut(s)	1028, 1584, 2157, 3033
BstX2I	RGATCY	5 cut(s)	185, 408, 768, 1159, 1933
BstXI	CCANNNNNNTGG	1 cut(s)	2338
BstYI	RGATCY	5 cut(s)	185, 408, 768, 1159, 1933
Bsu36I	CCTNAGG	1 cut(s)	2402
BsuI	GTATCC	2 cut(s)	2408, 2540
BsuRI	GGCC	7 cut(s)	591, 617, 1352, 1373, 2330, 2574, 2657
BtgI	CCRYGG	4 cut(s)	1155, 1383, 1884, 2652
BtgZI	GCGATG	1 cut(s)	2955
BtsCI	GGATG	8 cut(s)	341, 877, 1151, 1204, 1353, 1809, 2163, 3009
BtsI	GCAGTG	1 cut(s)	2149
BveI	ACCTGC	1 cut(s)	1762
Cac8I	GCNNGC	5 cut(s)	110, 139, 504, 953, 1538
CciI	TCATGA	1 cut(s)	1218
Cfr13I	GGNCC	5 cut(s)	43, 590, 615, 1751, 2328
Csp6I	GTAC	5 cut(s)	114, 219, 1735, 1897, 2440
CspCI	CAANNNNNGTGG	4 cut(s)	7, 42, 1402, 1437
CviQI	GTAC	5 cut(s)	114, 219, 1735, 1897, 2440
DdeI	CTNAG	7 cut(s)	54, 157, 1163, 2070, 2402, 2906, 2951
DraIII	CACNNNGTG	1 cut(s)	984
DrdI	GACNNNNNNGTC	1 cut(s)	1956
DseDI	GACNNNNNNGTC	1 cut(s)	1956
EaeI	YGGCCR	1 cut(s)	2655
Eam1104I	CTCTTC	4 cut(s)	806, 920, 1362, 1681
EarI	CTCTTC	4 cut(s)	806, 920, 1362, 1681
EciI	GGCGGA	1 cut(s)	768
Ecl136II	GAGCTC	1 cut(s)	2593
Eco130I	CCWWGG	4 cut(s)	1155, 1383, 1884, 2652
Eco24I	GRGCYC	1 cut(s)	2595
Eco31I	GGTCTC	1 cut(s)	1082
Eco32I	GATATC	1 cut(s)	2380
Eco47I	GGWCC	2 cut(s)	43, 1751
Eco53kI	GAGCTC	1 cut(s)	2593
Eco57I	CTGAAG	4 cut(s)	116, 261, 1625, 1982
Eco81I	CCTNAGG	1 cut(s)	2402
Eco91I	GGTNACC	3 cut(s)	247, 1290, 2113
EcoICRI	GAGCTC	1 cut(s)	2593
EcoO109I	RGGNCCY	2 cut(s)	43, 1751
EcoO65I	GGTNACC	3 cut(s)	247, 1290, 2113
EcoRI	GAATTC	1 cut(s)	2082
EcoRII	CCWGG	4 cut(s)	22, 1592, 2388, 2574
EcoRV	GATATC	1 cut(s)	2380
EcoT14I	CCWWGG	4 cut(s)	1155, 1383, 1884, 2652
EcoT38I	GRGCYC	1 cut(s)	2595
ErhI	CCWWGG	4 cut(s)	1155, 1383, 1884, 2652
FalI	AAGNNNNNCTT	2 cut(s)	2404, 2436
FaqI	GGGAC	2 cut(s)	1898, 1962
FauI	CCCGC	1 cut(s)	669
FbaI	TGATCA	3 cut(s)	874, 1675, 1806
FokI	GGATG	8 cut(s)	328, 884, 1138, 1211, 1360, 1816, 2170, 3016
FriOI	GRGCYC	1 cut(s)	2595
FspBI	CTAG	4 cut(s)	503, 2057, 2894, 2999
GsaI	CCCAGC	2 cut(s)	1949, 2570
GsuI	CTGGAG	2 cut(s)	281, 2034
HaeIII	GGCC	7 cut(s)	591, 617, 1352, 1373, 2330, 2574, 2657
HapII	CCGG	3 cut(s)	696, 1146, 2037
HincII	GTYRAC	1 cut(s)	1450
HindII	GTYRAC	1 cut(s)	1450
HindIII	AAGCTT	3 cut(s)	1515, 2210, 2682
HinfI	GANTC	9 cut(s)	30, 50, 532, 576, 680, 1436, 1530, 1988, 2016
HpaII	CCGG	3 cut(s)	696, 1146, 2037
Hpy166II	GTNNAC	5 cut(s)	976, 1054, 1450, 1781, 2962
Hpy188I	TCNGA	8 cut(s)	268, 781, 1938, 1962, 1997, 2081, 2206, 2356
Hpy8I	GTNNAC	5 cut(s)	976, 1054, 1450, 1781, 2962
Hpy99I	CGWCG	2 cut(s)	598, 3053
HpyCH4IV	ACGT	3 cut(s)	349, 664, 1812
HpyF10VI	GCNNNNNNNGC	3 cut(s)	948, 1870, 2885
HpyF3I	CTNAG	7 cut(s)	54, 157, 1163, 2070, 2402, 2906, 2951
HpySE526I	ACGT	3 cut(s)	349, 664, 1812
Kpn2I	TCCGGA	1 cut(s)	2036
Ksp22I	TGATCA	3 cut(s)	874, 1675, 1806
LmnI	GCTCC	7 cut(s)	300, 923, 1148, 1545, 1691, 2287, 2598
MaeI	CTAG	4 cut(s)	503, 2057, 2894, 2999
MaeII	ACGT	3 cut(s)	349, 664, 1812
MbiI	CCGCTC	1 cut(s)	926
MfeI	CAATTG	1 cut(s)	2534
MflI	RGATCY	5 cut(s)	185, 408, 768, 1159, 1933
MhlI	GDGCHC	5 cut(s)	90, 367, 561, 2595, 2964
MlsI	TGGCCA	1 cut(s)	2657
MluNI	TGGCCA	1 cut(s)	2657
MlyI	GAGTC	2 cut(s)	39, 2025
MmeI	TCCRAC	5 cut(s)	291, 339, 693, 2229, 2287
Mox20I	TGGCCA	1 cut(s)	2657
MroI	TCCGGA	1 cut(s)	2036
MroXI	GAANNNNTTC	2 cut(s)	1518, 2754
MscI	TGGCCA	1 cut(s)	2657
MseI	TTAA	8 cut(s)	338, 746, 1878, 2223, 2268, 2609, 2802, 2844
Msp20I	TGGCCA	1 cut(s)	2657
MspA1I	CMGCKG	3 cut(s)	108, 164, 2905
MspCI	CTTAAG	1 cut(s)	745
MspI	CCGG	3 cut(s)	696, 1146, 2037
MspR9I	CCNGG	5 cut(s)	24, 697, 1594, 2390, 2576
MunI	CAATTG	1 cut(s)	2534
MvaI	CCWGG	4 cut(s)	24, 1594, 2390, 2576
MwoI	GCNNNNNNNGC	3 cut(s)	948, 1870, 2885
NciI	CCSGG	1 cut(s)	697
NcoI	CCATGG	4 cut(s)	1155, 1383, 1884, 2652
NheI	GCTAGC	1 cut(s)	502
NlaIV	GGNNCC	6 cut(s)	87, 364, 410, 616, 2094, 2283
NmuCI	GTSAC	8 cut(s)	350, 794, 958, 989, 1378, 1834, 2113, 2707
NspI	RCATGY	6 cut(s)	10, 955, 1192, 1456, 1540, 2930
PaeI	GCATGC	2 cut(s)	955, 1540
PagI	TCATGA	1 cut(s)	1218
PciI	ACATGT	4 cut(s)	6, 1188, 1452, 2926
PdmI	GAANNNNTTC	2 cut(s)	1518, 2754
PfeI	GAWTC	7 cut(s)	50, 532, 576, 680, 1436, 1530, 1988
Pfl23II	CGTACG	1 cut(s)	113
PflFI	GACNNNGTC	1 cut(s)	1583
PfoI	TCCNGGA	1 cut(s)	695
PleI	GAGTC	2 cut(s)	38, 2024
PpsI	GAGTC	2 cut(s)	38, 2024
Ppu21I	YACGTR	2 cut(s)	350, 665
PpuMI	RGGWCCY	2 cut(s)	43, 1751
PscI	ACATGT	4 cut(s)	6, 1188, 1452, 2926
Psp124BI	GAGCTC	1 cut(s)	2595
Psp5II	RGGWCCY	2 cut(s)	43, 1751
Psp6I	CCWGG	4 cut(s)	22, 1592, 2388, 2574
PspEI	GGTNACC	3 cut(s)	247, 1290, 2113
PspFI	CCCAGC	2 cut(s)	1945, 2566
PspGI	CCWGG	4 cut(s)	22, 1592, 2388, 2574
PspLI	CGTACG	1 cut(s)	113
PspN4I	GGNNCC	6 cut(s)	87, 364, 410, 616, 2094, 2283
PspPI	GGNCC	5 cut(s)	43, 590, 615, 1751, 2328
PspPPI	RGGWCCY	2 cut(s)	43, 1751
PsuI	RGATCY	5 cut(s)	185, 408, 768, 1159, 1933
PsyI	GACNNNGTC	1 cut(s)	1583
PvuII	CAGCTG	2 cut(s)	164, 2905
RsaI	GTAC	5 cut(s)	115, 220, 1736, 1898, 2441
RsaNI	GTAC	5 cut(s)	114, 219, 1735, 1897, 2440
SacI	GAGCTC	1 cut(s)	2595
SaqAI	TTAA	8 cut(s)	338, 746, 1878, 2223, 2268, 2609, 2802, 2844
Sau96I	GGNCC	5 cut(s)	43, 590, 615, 1751, 2328
SchI	GAGTC	2 cut(s)	39, 2025
ScrFI	CCNGG	5 cut(s)	24, 697, 1594, 2390, 2576
SduI	GDGCHC	5 cut(s)	90, 367, 561, 2595, 2964
SfcI	CTRYAG	4 cut(s)	2460, 2505, 2703, 2900
SinI	GGWCC	2 cut(s)	43, 1751
SmlI	CTYRAG	2 cut(s)	745, 2450
SmoI	CTYRAG	2 cut(s)	745, 2450
SpeI	ACTAGT	1 cut(s)	2056
SphI	GCATGC	2 cut(s)	955, 1540
SspMI	CTAG	4 cut(s)	503, 2057, 2894, 2999
SstI	GAGCTC	1 cut(s)	2595
StyD4I	CCNGG	5 cut(s)	22, 695, 1592, 2388, 2574
StyI	CCWWGG	4 cut(s)	1155, 1383, 1884, 2652
TaiI	ACGT	3 cut(s)	352, 667, 1815
TaqI	TCGA	7 cut(s)	33, 627, 1512, 1653, 1818, 1854, 3051
TatI	WGTACW	2 cut(s)	1734, 2439
TauI	GCSGC	4 cut(s)	108, 1601, 2471, 2574
TfiI	GAWTC	7 cut(s)	50, 532, 576, 680, 1436, 1530, 1988
Tru1I	TTAA	8 cut(s)	338, 746, 1878, 2223, 2268, 2609, 2802, 2844
Tru9I	TTAA	8 cut(s)	338, 746, 1878, 2223, 2268, 2609, 2802, 2844
TseFI	GTSAC	8 cut(s)	350, 794, 958, 989, 1378, 1834, 2113, 2707
Tsp45I	GTSAC	8 cut(s)	350, 794, 958, 989, 1378, 1834, 2113, 2707
Tth111I	GACNNNGTC	1 cut(s)	1583
Vha464I	CTTAAG	1 cut(s)	745
VneI	GTGCAC	1 cut(s)	2960
VpaK11BI	GGWCC	2 cut(s)	43, 1751
XapI	RAATTY	5 cut(s)	457, 1486, 2082, 2175, 2548
XceI	RCATGY	6 cut(s)	10, 955, 1192, 1456, 1540, 2930
XmnI	GAANNNNTTC	2 cut(s)	1518, 2754
XspI	CTAG	4 cut(s)	503, 2057, 2894, 2999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.