Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

55624269 .. 55629911

Gene Structure 5643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0387100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2388 bp

ATGTATGTGGTGGATAGCAAAGGAGGTGCTATAGCATGCATGCTGCTGGCATTGTTCTTATTGGGGACATGGCCTGCTGTCCTGACTATGCTCGAAAGAAGAGGCCGGCTTCCTCAGCATACTTATTTGGATTACTCTATCACCAATTTCTTGGTTGCTGTTCTGATTGCTTTGACATTTGGTCAGATAGGCAGTAGCACACCTGACAAGCCCAATTTTATAACTCAACTTTCACAGGATAATTTGCCTAGTGTTTTATTCGCAATGGCGGGTGGGATAGTCCTGAGCCTTGGAAATCTTTCTTCACAGTATGCATTTGCTTTAGTTGGTTTGTCACTGACAGAGGTGATCACTGCAAGCATCACAACTGTCATAGGCACAACCTTGAATTACTTCTTAGACAACAGAATTAATAGAGCCGAGATTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCACTCGTCCAATGCAGCTGATAACAAAGTAAAACTTGACAGTTTTCCCAGTGATTCAAAAGATGGAGAAAAGGCTCTAAAACAAATTCCAGATAAGGATGGGTTAAAGGATTTGGAGAGTGGAAATGAGAAAGCGAAGGCTGGCACTGCAGACTATCTTGTACAGATTGAGAACCAAAGAGCAATTAAGGTTTTTGGGAAGAAGACTTACATTGGACTGGCCATAACTTTCTTTGCGGGACTTTGCTTCTCCCTCTTCACACCAGCATTCAACGTGGCCACAAATGATCAGTGGCATACTTTGAATAAAGGAGTTCCTCATTTGGTTGTCTATACTGCATTTTTCTACTTCTCAGCATCTTGTTTCGTCATTGCTATCATTTTAAACACCATCTTCCTTTACCGCCCTATACTAGACTTACCCAAAAGTTCATTCAAAGCTTACTTGAACGACTGGGAGGGTAGGGGTTGGGCCCTTTTGGCTGGTCTCATATGTGGATTCGGCAACGGTCTCCAATTCATGGGAGGTCAAGCTGCAGGATATGCAGCAGCTGATTCTGTTCAGCTTCTGGGTCCTCCACAACTAGTGGGTGCAACACTATTGATTGGGGCAGGTGATCTTTCTTCTTCTACTGATATCCCTGGTGTTCCACTGCTGTTTTTTTTGCCGTCTGAGTGGAATTTATCGAGGGGGTTACAGATGTATGTGGTGGAAAGCAAAGGAGGTGCCATAGCATGCATGCTTCTGGCCTTGCTCTTCTTGGGGACATGGCCTGCTATCCTGACTATGCTCGAAAGAAGAGGCCGACTTCCTCAGCATACTTATCTGGATTATTCGATCACCAATTTCTTGGCTGCTATCCTTATTGCTTTGACATTTGGTCAGATAGGGAGTAGCACAGCTGAGGAGCCCAATTTTATAACTCAACTTTTGCAGTTGCCGGAGAATTGGCCCTGTGTTTTATTTGCAATGGCGGGTGGGATATTCCTGAGCCTTGGGAATCTTTCTTCACAGTATGCATTTGCTTTAGTCGGTTTGTCGGTGACAGAAGTGATCACTGCAAGCATCACAGTTGTCATAGGCACTACCTTGAATTACTTCTTAGATAACAAAATAAACAGCGCTGATATTCTTTTCCCTGGTGTTGCTTGCTTCTTGATTGCGGTTTGTCTTGGCTCTGCTGTTCACTCATCCAATGCAGCTGATAACAAAGTAAAACTAGACGATTTGCCAAGTGATCCAGAAGACGGAGAAAAGCTTTCAAGTGTGATTCCAAATAAGGAAGGGAAGGACCTGGAGACCGGAAATGATTATGCTGAGAAAGCGAAGGCTGGGACTGCAGATTTTCTTGTGAAGCTTGAGAACCAAAGAGCAATTAAGGTTTTTGGGAAGAGCATTTTTATTGGATTGGCCATATCTTTCTTTGCTGGAGTTTGCTTCTCTCTCTTCTCACCTTCATTCAACTTGGCCACAAATGATCAGTGGAACACTCTAAAGGAAGGAGTTCCTGATTTGGTTGTCTATACTGCGTTTTTCTACTTCTCAGCATCTTGTTTCGTCATTGCCATCATTCTAAATATCACCTTCCTCTACCACCCTATACTAGGCTCACCCAAATCATCATTCATAGCTTACTTGAGTGACTGGGATGGCAGGGGCTGGGCCTTTTTGGCTGGTATTATATGTGGATTCGGTAATGGTCTCCAATTCATGGGAGGCCAAGCTGCAGGATATGCAGCAGCTGATGCTGTTCAGGCACTTCCACTTGTGAGCACTTTTTGGGGTATACTTCTGTTTGGAGAGTTCCGAAAATCATCACGAAGAACATATGCGTTGCTTGTCAGCATGTTGTTTATGTTTATTGTTGCCGTTGCTCTCCTCATGGCATCATCAGGGCAACGAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

795

Amino Acids

85.57

Weight (kDa)

5.53

Isoelectric Point (pI)

32.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ureide_permease	PF07168	41 - 351	5.5e-163	Ureide permease
Ureide_permease	PF07168	434 - 790	6.3e-190	Ureide permease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	221, 1400
AarI	CACCTGC	1 cut(s)	1082
Acc36I	ACCTGC	1 cut(s)	1082
AccB1I	GGYRCC	1 cut(s)	1205
AccB7I	CCANNNNNTGG	2 cut(s)	1000, 2191
AccI	GTMKAC	1 cut(s)	2266
AciI	CCGC	6 cut(s)	269, 458, 716, 883, 1454, 1643
AclWI	GGATC	1 cut(s)	1712
AcoI	YGGCCR	4 cut(s)	699, 756, 1890, 1947
AcsI	RAATTY	2 cut(s)	564, 1159
AfaI	GTAC	1 cut(s)	642
AfeI	AGCGCT	1 cut(s)	1603
AfiI	CCNNNNNNNGG	4 cut(s)	1000, 1727, 2084, 2191
AgsI	TTSAA	9 cut(s)	388, 537, 751, 784, 916, 928, 1573, 1743, 1942
AhdI	GACNNNNNGTC	2 cut(s)	180, 1359
AhlI	ACTAGT	1 cut(s)	1063
AjnI	CCWGG	4 cut(s)	433, 1120, 1618, 1773
AjuI	GAANNNNNNNTTGG	4 cut(s)	896, 928, 2087, 2119
Alw21I	GWGCWC	1 cut(s)	2255
Alw26I	GTCTC	4 cut(s)	971, 995, 1772, 2186
AlwI	GGATC	1 cut(s)	1712
AlwNI	CAGNNNCTG	4 cut(s)	1031, 1048, 2139, 2222
Aor51HI	AGCGCT	1 cut(s)	1603
ApaI	GGGCCC	1 cut(s)	955
ApoI	RAATTY	2 cut(s)	564, 1159
AseI	ATTAAT	1 cut(s)	411
Asp700I	GAANNNNTTC	4 cut(s)	298, 392, 1577, 1983
AspLEI	GCGC	1 cut(s)	1604
AspS9I	GGNCC	6 cut(s)	951, 952, 1052, 1431, 1771, 2142
AsuHPI	GGTGA	8 cut(s)	133, 358, 1106, 1312, 1534, 1923, 2053, 2082
AvaII	GGWCC	2 cut(s)	1052, 1771
BaeGI	GKGCMC	1 cut(s)	955
BalI	TGGCCA	4 cut(s)	701, 758, 1892, 1949
BanI	GGYRCC	1 cut(s)	1205
BanII	GRGCYC	2 cut(s)	955, 1392
BarI	GAAGNNNNNNTAC	2 cut(s)	671, 703
BbsI	GAAGAC	2 cut(s)	689, 1731
Bbv12I	GWGCWC	1 cut(s)	2255
BbvCI	CCTCAGC	3 cut(s)	114, 1293, 1383
BccI	CCATC	5 cut(s)	536, 572, 878, 2054, 2123
BceAI	ACGGC	2 cut(s)	1132, 2333
BciT130I	CCWGG	4 cut(s)	435, 1122, 1620, 1775
BclI	TGATCA	4 cut(s)	348, 766, 1533, 1957
BcoDI	GTCTC	4 cut(s)	971, 995, 1772, 2186
BcuI	ACTAGT	1 cut(s)	1063
BfaI	CTAG	5 cut(s)	249, 893, 1064, 1700, 2084
BfmI	CTRYAG	5 cut(s)	30, 627, 1014, 1818, 2205
BfoI	RGCGCY	1 cut(s)	1605
BfuAI	ACCTGC	1 cut(s)	1082
BglI	GCCNNNNNGGC	2 cut(s)	959, 2150
Bme1390I	CCNGG	4 cut(s)	435, 1122, 1620, 1775
Bme18I	GGWCC	2 cut(s)	1052, 1771
BmeRI	GACNNNNNGTC	2 cut(s)	180, 1359
BmgT120I	GGNCC	6 cut(s)	951, 952, 1052, 1431, 1771, 2142
BmiI	GGNNCC	4 cut(s)	953, 1053, 1207, 1389
BmrFI	CCNGG	4 cut(s)	435, 1122, 1620, 1775
BmrI	ACTGGG	3 cut(s)	522, 943, 2134
BmsI	GCATC	6 cut(s)	369, 845, 1554, 2036, 2215, 2375
BmuI	ACTGGG	3 cut(s)	522, 943, 2134
BpiI	GAAGAC	2 cut(s)	689, 1731
BpmI	CTGGAG	2 cut(s)	1796, 1929
Bpu10I	CCTNAGC	5 cut(s)	114, 284, 1293, 1383, 1469
BpuEI	CTTGAG	2 cut(s)	1859, 2137
BsaI	GGTCTC	4 cut(s)	971, 995, 1772, 2186
BsaJI	CCNNGG	5 cut(s)	289, 433, 1120, 1474, 1618
BsaWI	WCCGGW	1 cut(s)	1781
Bsc4I	CCNNNNNNNGG	4 cut(s)	1000, 1727, 2084, 2191
Bse118I	RCCGGY	1 cut(s)	105
Bse1I	ACTGG	4 cut(s)	528, 702, 938, 2129
Bse3DI	GCAATG	4 cut(s)	270, 849, 1455, 2040
BseBI	CCWGG	4 cut(s)	435, 1122, 1620, 1775
BseDI	CCNNGG	5 cut(s)	289, 433, 1120, 1474, 1618
BseGI	GGATG	3 cut(s)	583, 1670, 2134
BseLI	CCNNNNNNNGG	4 cut(s)	1000, 1727, 2084, 2191
BseMI	GCAATG	4 cut(s)	270, 849, 1455, 2040
BseMII	CTCAG	9 cut(s)	128, 275, 846, 1143, 1307, 1374, 1460, 1788, 2037
BseNI	ACTGG	4 cut(s)	528, 702, 938, 2129
BseRI	GAGGAG	2 cut(s)	1400, 2348
BseSI	GKGCMC	1 cut(s)	955
BseYI	CCCAGC	2 cut(s)	1811, 2139
BshNI	GGYRCC	1 cut(s)	1205
BsiHKAI	GWGCWC	1 cut(s)	2255
BsiSI	CCGG	3 cut(s)	106, 1421, 1782
BslFI	GGGAC	4 cut(s)	79, 732, 1258, 1828
BslI	CCNNNNNNNGG	4 cut(s)	1000, 1727, 2084, 2191
BsmAI	GTCTC	4 cut(s)	971, 995, 1772, 2186
BsmFI	GGGAC	4 cut(s)	79, 732, 1258, 1828
BsmI	GAATGC	1 cut(s)	746
Bso31I	GGTCTC	4 cut(s)	971, 995, 1772, 2186
Bsp120I	GGGCCC	1 cut(s)	951
Bsp1286I	GDGCHC	3 cut(s)	955, 1392, 2255
Bsp1407I	TGTACA	1 cut(s)	640
Bsp143I	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
BspACI	CCGC	6 cut(s)	269, 458, 716, 883, 1454, 1643
BspCNI	CTCAG	9 cut(s)	127, 276, 845, 1144, 1306, 1375, 1461, 1789, 2036
BspLI	GGNNCC	4 cut(s)	953, 1053, 1207, 1389
BspMAI	CTGCAG	4 cut(s)	631, 1018, 1822, 2209
BspMI	ACCTGC	1 cut(s)	1082
BspPI	GGATC	1 cut(s)	1712
BspQI	GCTCTTC	2 cut(s)	1241, 1865
BspT107I	GGYRCC	1 cut(s)	1205
BspTNI	GGTCTC	4 cut(s)	971, 995, 1772, 2186
BsrDI	GCAATG	4 cut(s)	270, 849, 1455, 2040
BsrFI	RCCGGY	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	640
BsrI	ACTGG	4 cut(s)	528, 702, 938, 2129
BssAI	RCCGGY	1 cut(s)	105
BssECI	CCNNGG	5 cut(s)	289, 433, 1120, 1474, 1618
BssMI	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
BssNAI	GTATAC	1 cut(s)	2267
BssT1I	CCWWGG	2 cut(s)	289, 1474
Bst1107I	GTATAC	1 cut(s)	2267
Bst2UI	CCWGG	4 cut(s)	435, 1122, 1620, 1775
Bst4CI	ACNGT	6 cut(s)	309, 370, 521, 989, 1494, 1552
Bst6I	CTCTTC	6 cut(s)	94, 740, 1241, 1273, 1865, 1931
BstAPI	GCANNNNNTGC	3 cut(s)	1022, 2213, 2225
BstAUI	TGTACA	1 cut(s)	640
BstENI	CCTNNNNNAGG	1 cut(s)	2082
BstF5I	GGATG	3 cut(s)	583, 1670, 2134
BstH2I	RGCGCY	1 cut(s)	1605
BstHHI	GCGC	1 cut(s)	1604
BstKTI	GATC	7 cut(s)	351, 769, 1099, 1320, 1536, 1720, 1960
BstMAI	GTCTC	4 cut(s)	971, 995, 1772, 2186
BstMBI	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
BstNI	CCWGG	4 cut(s)	435, 1122, 1620, 1775
BstNSI	RCATGY	5 cut(s)	39, 43, 1218, 1222, 2329
BstSCI	CCNGG	4 cut(s)	433, 1120, 1618, 1773
BstSFI	CTRYAG	5 cut(s)	30, 627, 1014, 1818, 2205
BstSLI	GKGCMC	1 cut(s)	955
BstV2I	GAAGAC	2 cut(s)	689, 1731
BstXI	CCANNNNNNTGG	2 cut(s)	151, 1330
BstZ17I	GTATAC	1 cut(s)	2267
BtsCI	GGATG	3 cut(s)	583, 1670, 2134
BtsI	GCAGTG	4 cut(s)	351, 624, 1130, 1536
BtsIMutI	CAGTG	8 cut(s)	335, 351, 535, 624, 776, 1130, 1536, 1967
BveI	ACCTGC	1 cut(s)	1082
CaiI	CAGNNNCTG	4 cut(s)	1031, 1048, 2139, 2222
CfoI	GCGC	1 cut(s)	1604
Cfr10I	RCCGGY	1 cut(s)	105
Cfr13I	GGNCC	6 cut(s)	951, 952, 1052, 1431, 1771, 2142
Csp6I	GTAC	1 cut(s)	641
CviQI	GTAC	1 cut(s)	641
DpnI	GATC	7 cut(s)	350, 768, 1098, 1319, 1535, 1719, 1959
DpnII	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
DraI	TTTAAA	1 cut(s)	864
DriI	GACNNNNNGTC	2 cut(s)	180, 1359
EaeI	YGGCCR	4 cut(s)	699, 756, 1890, 1947
Eam1104I	CTCTTC	6 cut(s)	94, 740, 1241, 1273, 1865, 1931
Eam1105I	GACNNNNNGTC	2 cut(s)	180, 1359
EarI	CTCTTC	6 cut(s)	94, 740, 1241, 1273, 1865, 1931
Eco130I	CCWWGG	2 cut(s)	289, 1474
Eco24I	GRGCYC	2 cut(s)	955, 1392
Eco31I	GGTCTC	4 cut(s)	971, 995, 1772, 2186
Eco32I	GATATC	1 cut(s)	1117
Eco47I	GGWCC	2 cut(s)	1052, 1771
Eco47III	AGCGCT	1 cut(s)	1603
EcoNI	CCTNNNNNAGG	1 cut(s)	2082
EcoO109I	RGGNCCY	3 cut(s)	952, 1052, 1771
EcoRII	CCWGG	4 cut(s)	433, 1120, 1618, 1773
EcoRV	GATATC	1 cut(s)	1117
EcoT14I	CCWWGG	2 cut(s)	289, 1474
EcoT22I	ATGCAT	4 cut(s)	41, 316, 1220, 1501
EcoT38I	GRGCYC	2 cut(s)	955, 1392
ErhI	CCWWGG	2 cut(s)	289, 1474
FalI	AAGNNNNNCTT	2 cut(s)	498, 530
FaqI	GGGAC	4 cut(s)	79, 732, 1258, 1828
FauI	CCCGC	3 cut(s)	262, 709, 1447
FauNDI	CATATG	2 cut(s)	971, 2308
FbaI	TGATCA	4 cut(s)	348, 766, 1533, 1957
FblI	GTMKAC	1 cut(s)	2266
FokI	GGATG	3 cut(s)	590, 1657, 2141
FriOI	GRGCYC	2 cut(s)	955, 1392
FspBI	CTAG	5 cut(s)	249, 893, 1064, 1700, 2084
GlaI	GCGC	1 cut(s)	1603
GsaI	CCCAGC	2 cut(s)	1815, 2143
GsuI	CTGGAG	2 cut(s)	1796, 1929
HaeII	RGCGCY	1 cut(s)	1605
HapII	CCGG	3 cut(s)	106, 1421, 1782
HhaI	GCGC	1 cut(s)	1604
Hin6I	GCGC	1 cut(s)	1602
HinP1I	GCGC	1 cut(s)	1602
HindIII	AAGCTT	3 cut(s)	918, 1736, 1835
HinfI	GANTC	7 cut(s)	424, 533, 978, 1034, 1480, 1750, 2169
HpaII	CCGG	3 cut(s)	106, 1421, 1782
HphI	GGTGA	8 cut(s)	133, 358, 1106, 1312, 1534, 1923, 2053, 2082
Hpy166II	GTNNAC	3 cut(s)	481, 1666, 2267
Hpy188I	TCNGA	5 cut(s)	165, 186, 1153, 1365, 2288
Hpy8I	GTNNAC	3 cut(s)	481, 1666, 2267
HpyAV	CCTTC	7 cut(s)	610, 1757, 1762, 1801, 1944, 1973, 2074
HpyCH4III	ACNGT	6 cut(s)	309, 370, 521, 989, 1494, 1552
HpyCH4IV	ACGT	1 cut(s)	753
HpySE526I	ACGT	1 cut(s)	753
HspAI	GCGC	1 cut(s)	1602
KroI	GCCGGC	1 cut(s)	105
KroNI	GCCGGC	1 cut(s)	107
Ksp22I	TGATCA	4 cut(s)	348, 766, 1533, 1957
Kzo9I	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
LguI	GCTCTTC	2 cut(s)	1241, 1865
LmnI	GCTCC	1 cut(s)	1387
LweI	GCATC	6 cut(s)	369, 845, 1554, 2036, 2215, 2375
MaeI	CTAG	5 cut(s)	249, 893, 1064, 1700, 2084
MaeII	ACGT	1 cut(s)	753
MaeIII	GTNAC	4 cut(s)	333, 1173, 1522, 2120
MalI	GATC	7 cut(s)	350, 768, 1098, 1319, 1535, 1719, 1959
MboI	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
MhlI	GDGCHC	3 cut(s)	955, 1392, 2255
MlsI	TGGCCA	4 cut(s)	701, 758, 1892, 1949
MluNI	TGGCCA	4 cut(s)	701, 758, 1892, 1949
Mox20I	TGGCCA	4 cut(s)	701, 758, 1892, 1949
Mph1103I	ATGCAT	4 cut(s)	41, 316, 1220, 1501
MroNI	GCCGGC	1 cut(s)	105
MroXI	GAANNNNTTC	4 cut(s)	298, 392, 1577, 1983
MscI	TGGCCA	4 cut(s)	701, 758, 1892, 1949
MseI	TTAA	5 cut(s)	411, 584, 666, 863, 1857
Msp20I	TGGCCA	4 cut(s)	701, 758, 1892, 1949
MspA1I	CMGCKG	5 cut(s)	497, 1031, 1382, 1682, 2222
MspI	CCGG	3 cut(s)	106, 1421, 1782
MspR9I	CCNGG	4 cut(s)	435, 1122, 1620, 1775
Mva1269I	GAATGC	1 cut(s)	746
MvaI	CCWGG	4 cut(s)	435, 1122, 1620, 1775
NaeI	GCCGGC	1 cut(s)	107
NdeI	CATATG	2 cut(s)	971, 2308
NdeII	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
NgoMIV	GCCGGC	1 cut(s)	105
NlaIV	GGNNCC	4 cut(s)	953, 1053, 1207, 1389
NmeAIII	GCCGAG	1 cut(s)	445
NmuCI	GTSAC	3 cut(s)	333, 1522, 2120
NsiI	ATGCAT	4 cut(s)	41, 316, 1220, 1501
NspI	RCATGY	5 cut(s)	39, 43, 1218, 1222, 2329
PaeI	GCATGC	4 cut(s)	39, 43, 1218, 1222
PaqCI	CACCTGC	1 cut(s)	1082
PciSI	GCTCTTC	2 cut(s)	1241, 1865
PctI	GAATGC	1 cut(s)	746
PdiI	GCCGGC	1 cut(s)	107
PdmI	GAANNNNTTC	4 cut(s)	298, 392, 1577, 1983
PfeI	GAWTC	7 cut(s)	424, 533, 978, 1034, 1480, 1750, 2169
PflMI	CCANNNNNTGG	2 cut(s)	1000, 2191
PpuMI	RGGWCCY	2 cut(s)	1052, 1771
PshBI	ATTAAT	1 cut(s)	411
PsiI	TTATAA	2 cut(s)	221, 1400
Psp5II	RGGWCCY	2 cut(s)	1052, 1771
Psp6I	CCWGG	4 cut(s)	433, 1120, 1618, 1773
PspFI	CCCAGC	2 cut(s)	1811, 2139
PspGI	CCWGG	4 cut(s)	433, 1120, 1618, 1773
PspN4I	GGNNCC	4 cut(s)	953, 1053, 1207, 1389
PspOMI	GGGCCC	1 cut(s)	951
PspPI	GGNCC	6 cut(s)	951, 952, 1052, 1431, 1771, 2142
PspPPI	RGGWCCY	2 cut(s)	1052, 1771
PstI	CTGCAG	4 cut(s)	631, 1018, 1822, 2209
PstNI	CAGNNNCTG	4 cut(s)	1031, 1048, 2139, 2222
PvuII	CAGCTG	5 cut(s)	497, 1031, 1382, 1682, 2222
RsaI	GTAC	1 cut(s)	642
RsaNI	GTAC	1 cut(s)	641
SapI	GCTCTTC	2 cut(s)	1241, 1865
SaqAI	TTAA	5 cut(s)	411, 584, 666, 863, 1857
Sau3AI	GATC	7 cut(s)	348, 766, 1096, 1317, 1533, 1717, 1957
Sau96I	GGNCC	6 cut(s)	951, 952, 1052, 1431, 1771, 2142
ScrFI	CCNGG	4 cut(s)	435, 1122, 1620, 1775
SduI	GDGCHC	3 cut(s)	955, 1392, 2255
SfaNI	GCATC	6 cut(s)	369, 845, 1554, 2036, 2215, 2375
SfcI	CTRYAG	5 cut(s)	30, 627, 1014, 1818, 2205
SinI	GGWCC	2 cut(s)	1052, 1771
SmlI	CTYRAG	2 cut(s)	1838, 2116
SmoI	CTYRAG	2 cut(s)	1838, 2116
SpeI	ACTAGT	1 cut(s)	1063
SphI	GCATGC	4 cut(s)	39, 43, 1218, 1222
SsiI	CCGC	6 cut(s)	269, 458, 716, 883, 1454, 1643
SspMI	CTAG	5 cut(s)	249, 893, 1064, 1700, 2084
StyD4I	CCNGG	4 cut(s)	433, 1120, 1618, 1773
StyI	CCWWGG	2 cut(s)	289, 1474
TaaI	ACNGT	6 cut(s)	309, 370, 521, 989, 1494, 1552
TaiI	ACGT	1 cut(s)	756
TaqI	TCGA	4 cut(s)	93, 1166, 1272, 1316
TatI	WGTACW	1 cut(s)	640
TfiI	GAWTC	7 cut(s)	424, 533, 978, 1034, 1480, 1750, 2169
Tru1I	TTAA	5 cut(s)	411, 584, 666, 863, 1857
Tru9I	TTAA	5 cut(s)	411, 584, 666, 863, 1857
TscAI	CASTG	8 cut(s)	342, 358, 535, 631, 776, 1137, 1543, 1967
TseFI	GTSAC	3 cut(s)	333, 1522, 2120
Tsp45I	GTSAC	3 cut(s)	333, 1522, 2120
TspDTI	ATGAA	5 cut(s)	900, 988, 1926, 2095, 2179
TspGWI	ACGGA	1 cut(s)	1743
TspRI	CASTG	8 cut(s)	342, 358, 535, 631, 776, 1137, 1543, 1967
Van91I	CCANNNNNTGG	2 cut(s)	1000, 2191
VpaK11BI	GGWCC	2 cut(s)	1052, 1771
VspI	ATTAAT	1 cut(s)	411
XagI	CCTNNNNNAGG	1 cut(s)	2082
XapI	RAATTY	2 cut(s)	564, 1159
XceI	RCATGY	5 cut(s)	39, 43, 1218, 1222, 2329
XmiI	GTMKAC	1 cut(s)	2266
XmnI	GAANNNNTTC	4 cut(s)	298, 392, 1577, 1983
XspI	CTAG	5 cut(s)	249, 893, 1064, 1700, 2084
Zsp2I	ATGCAT	4 cut(s)	41, 316, 1220, 1501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.