Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Forward (+)

17892736 .. 17901735

Gene Structure 9000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032693

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3048 bp

ATGGGGAGTTCTGGAGTCGACCTTGAGAACCAACAAATAGCTCCCCCTGTTGATATTGATCGCCGAGGCAGATGGATAACTAGTCTCTTGGAGCGAATTCGTTCATTATGTTATCAGCTTCTCATAAAACCTTCTTCTGCTGATGATGACAGTGAAGAACTGGAACTGACAAGTACACACCTTACTCCTGCATCACCTCATGTTTCTGAAGCCGTATCAAGTTTGAGCGGGGAGGATGATGGTACTATAACTAGTACTGCTCCCGTTTCTGACCAAGTGATTCTGAACATTGAGGATGATACTACTACCAGGAAGGCTAATGAGGCTAAGATCCAGCTTGCAAATATTGAAAAGATAGTAAAGGAGAAGAACTTCGCTGCCTTACAGGAGTTTAGAGGCATCAAAGGAATTGCAGAGGCCACCAATCCAGATTTACATCACAGCGAAATCCCGGGCGATGAACAAGAACTTCTTGATCAACGCAGTGTAGTAGTCTCGATAACAGAGGCTCCGACTCCAAGCTTCTTCAAACTTCTCCTCCGATCCTACTTTGATTGGACCGTTTTCCTTCTGTTGGTGTATGCCTTCCTGTCAACTGTATTTGGTATCCAGCAGGAAGGCCCAAGTAATGGTTGGCTTGAAGGAGCTGTCGGAATGTTTGCGATCAGCATATTTGTGGTTGTAACTACATTGCAAAAGTATATCTCTGTGCCGCATAACAGGAAAACTAGTCAAATGGAAGTTAAGGTCTGTAAAGGAAGAAACCAGCTGGTTGATGTCTCCCCCTCGGATGTTGTGCCAGGTGACATAGTATGCTTGGAGTCGGGATCTCTAGTTCCTGCAGATGGTTTGTTCGTTTCGCCTGGTGAATCCTTAGAGCTGGAAGATGGTGAACTGCTAACGGTTGATGAAAGCAATCCGTTTCTTAATTATGGTGCAAAGGTGGTCAGTGGAAATGGTCGCATGTTGGTTACGTGTGTGGGAATGAAGACAACATTAGGTGGTCTGATGGAGCAAGTCAGATGTACTCCTAACCAGGGCCAATTACCAGCTCAACTGGATAAGTTGAGCACAAGGTTGCAGAATGTTGGGCTCTCGATCTCAATTTTGATGACTCTAGTGCTTATGATCCGTTCCCGGGTTCTAAAGGATAATGAGTACCCTGGCCTCCAAGCTGATCAGCTCAAGGGTAAAACAACTGCAAGCGAGGAGCTATTCAATGTCATTGGCAGGATTTTCATGAAATCAAGTGGGCAGATTAGTGTGTTGGCGACGTATGTGCCTTTGTTGATTGTAGGATTATCCGCTGGAGTACCTTTTTCAGTTGCACTTGCCATTACTTACTGGACTAAGACCACACTGTCCGGGAAACCCATTGCTCAAAGAATCTCAGCTTGTTTCACCATGGGCTCTGTGTCAACTATATGCATTGGTGGTGGTAGCTTAACTTTGAATCCTGTATTTAAAGTTGACGTGAGCCATGATGGGGATGAAATCATCGATACAAAGAGTATTGCTGGAATTGAAAAACATGTTCGTGAAGCTTTATATAAAGGAATCAGCACAACACTTTTGATGCCATCAAGCCCTTGTAGCTCAACAGAACACCAGCTCCTGCTTCGGTGGGCCAAATCTAATTTGGGTACAGATAATGAGAAATTTTTGAAGAATTGTACCATTGTGGTCAGCAAAAAGTTGAGCACCGATGAGGAGGCTAGTGGAGTTCTGATTAAGGACAGTGAAACCGGAGGTATGTGGTTGTATTGGAATGGACCTGCAGCAACAATATTACCCATGTGTTCTAAATACTATGACAGCATGGGGACAACAAAGCTCATCGATAAACAGAAGAAAGGTCATTTTGAGCAAATTATAGGGAAAATGCAGTCCAAACATCTCAAGACCATTGCATTTGCGTACAAGAAGATTGATGCTCCACTGCTTGAAGAAGACAACAACTTAATATTGATAGGACTGCTAGGTGTGAAGTGTTGCACTGAGACAATGGAAGTTCTACAAAAAGCGGGAGTGGACATCAAACAGTTCCCAAAAGAGAAAGAGTCAGTACTGTCGGAAGGTGAAAGTCCTGTTTATGGAATGGGAAGACCTGCTGACAAGCTCCACACACTGAAATGTCTGAAGGAAGAGGGCCATGTTGTAGCAATGGTTGGGGCTAGAACAAATGAGATTCCGGCTCTAAAAGAAGCCGATGTGGGGATTGCAATGGGGCCTTGCAATAGTGAAATGGCAGGAGAGTGTTCTGATCTCATCATCCCGGATGGCAGTCCCAGTTCCTTGTTCACCAATATTCTGATTGGCAGATGGATTCAATGCGACATTCAAAAGTACATCCAAGTTCAGCTCATCATGACTATATCATTGCTTGTGACAAACTTGGTTACTATAATGTTTTTGGGACACTGCACAGTTGCGGAAATTCCAGTAGTGTGGGTAAATATGCTTGTGACGACGCTATGTGGGCTTGCGCCATTGGTGGAGCCGCCAACAGAGGAGCTGATGGAGAAGATGCCAATAAAAAAAACTGAATCTCTCATTAGCAAGGCAATGTGGAGAAACATATTACTTCAAGCTTTATATCAGGCTTCTATCTTGGTTGCCTTAGAGTTCAAATGGAAAGCTCTCCCAGGCATCAACGAGAAGATCATGGAGTCCATTGTTTTTAACTGTTATGTTCTTTGTCAGGTATTTAACCTAGTCAGTTCAAGGGAGCCAGAGAAGAAAAATGTTTTCAGAGGTATACTTCGAACTCCATGCTTATGGGTGGCCGTAGGCTTTGGTATCACCATGCAGGTGGCCTTTGTTGAGGTTGCACACAAGGTTGCTGGCAATGCAAGGTTGGATTGGACACAATGGGGCATCTGTCTTCTAATAGCGATGGTTTCCTGGCTAATCGATTTCGCTGGAAAATGTGTATGGGGTATCATTATGAAGATTAGAACTACAATCAGCTCTCATATTGACATTGGATCCCCCAGTATGAGGTCAGCTGCTGTCTCTGAATCAGCCTCCAGTCGGGAGATCCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1016

Amino Acids

110.99

Weight (kDa)

5.56

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	244 - 340	6.6e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	543 - 662	2.2e-07	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	815 - 976	1.2e-34	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2800
AasI	GACNNNNNNGTC	1 cut(s)	1360
Acc36I	ACCTGC	3 cut(s)	1783, 2116, 2800
AccB7I	CCANNNNNTGG	1 cut(s)	629
AccBSI	CCGCTC	1 cut(s)	228
AccI	GTMKAC	2 cut(s)	18, 2758
AciI	CCGC	6 cut(s)	228, 713, 1305, 2024, 2432, 2501
AclWI	GGATC	7 cut(s)	325, 537, 835, 1123, 2982, 2995, 3034
AcoI	YGGCCR	1 cut(s)	2784
AcsI	RAATTY	3 cut(s)	96, 1658, 2436
AcuI	CTGAAG	2 cut(s)	228, 2159
AflIII	ACRYGT	2 cut(s)	974, 1531
AhlI	ACTAGT	3 cut(s)	80, 251, 728
AjiI	CACGTC	1 cut(s)	1474
AjnI	CCWGG	7 cut(s)	308, 799, 862, 1035, 1162, 2644, 2903
AloI	GAACNNNNNNTCC	4 cut(s)	819, 851, 1596, 1628
Alw21I	GWGCWC	2 cut(s)	1073, 1703
Alw26I	GTCTC	5 cut(s)	89, 499, 784, 1994, 3019
AlwI	GGATC	7 cut(s)	325, 537, 835, 1123, 2982, 2995, 3034
AlwNI	CAGNNNCTG	2 cut(s)	1615, 3011
Ama87I	CYCGRG	2 cut(s)	451, 1137
AoxI	GGCC	9 cut(s)	417, 619, 1039, 1165, 1626, 2149, 2228, 2784, 2814
ApeKI	GCWGC	3 cut(s)	377, 1778, 3008
ApoI	RAATTY	3 cut(s)	96, 1658, 2436
Asp700I	GAANNNNTTC	2 cut(s)	100, 371
AspLEI	GCGC	1 cut(s)	2488
AspS9I	GGNCC	7 cut(s)	558, 620, 1039, 1626, 1772, 2149, 2228
AsuC2I	CCSGG	6 cut(s)	452, 453, 1138, 1139, 1366, 2276
AsuHPI	GGTGA	8 cut(s)	186, 815, 878, 902, 1393, 2090, 2293, 2794
AsuII	TTCGAA	1 cut(s)	2764
AvaI	CYCGRG	2 cut(s)	451, 1137
AvaII	GGWCC	2 cut(s)	558, 1772
BamHI	GGATCC	1 cut(s)	2987
BanII	GRGCYC	2 cut(s)	1095, 1412
BbsI	GAAGAC	4 cut(s)	995, 1956, 2110, 2876
Bbv12I	GWGCWC	2 cut(s)	1073, 1703
BbvI	GCAGC	3 cut(s)	364, 1790, 2995
BceAI	ACGGC	2 cut(s)	197, 2771
BcgI	CGANNNNNNTGC	4 cut(s)	1261, 1295, 2754, 2788
BciT130I	CCWGG	7 cut(s)	310, 801, 864, 1037, 1164, 2646, 2905
BciVI	GTATCC	1 cut(s)	617
BclI	TGATCA	2 cut(s)	475, 1177
BcnI	CCSGG	6 cut(s)	452, 453, 1138, 1139, 1366, 2276
BcoDI	GTCTC	5 cut(s)	89, 499, 784, 1994, 3019
BcuI	ACTAGT	3 cut(s)	80, 251, 728
BfaI	CTAG	9 cut(s)	81, 252, 729, 833, 1118, 1716, 1979, 2175, 2714
BfmI	CTRYAG	3 cut(s)	840, 1776, 3044
BfuAI	ACCTGC	3 cut(s)	1783, 2116, 2800
BfuI	GTATCC	1 cut(s)	617
BisI	GCNGC	5 cut(s)	378, 713, 1779, 2501, 3009
BlsI	GCNGC	5 cut(s)	379, 714, 1780, 2502, 3010
BmcAI	AGTACT	2 cut(s)	256, 2067
Bme18I	GGWCC	2 cut(s)	558, 1772
BmeT110I	CYCGRG	2 cut(s)	451, 1137
BmgBI	CACGTC	1 cut(s)	1474
BmgT120I	GGNCC	7 cut(s)	558, 620, 1039, 1626, 1772, 2149, 2228
BmiI	GGNNCC	5 cut(s)	510, 2229, 2499, 2730, 2989
BmrI	ACTGGG	2 cut(s)	2283, 2988
BmsI	GCATC	7 cut(s)	200, 408, 1566, 1921, 2517, 2658, 2886
BmuI	ACTGGG	2 cut(s)	2283, 2988
BpiI	GAAGAC	4 cut(s)	995, 1956, 2110, 2876
BpmI	CTGGAG	3 cut(s)	33, 1329, 3013
Bpu14I	TTCGAA	1 cut(s)	2764
BpuEI	CTTGAG	3 cut(s)	44, 1169, 1883
BpuMI	CCSGG	6 cut(s)	452, 453, 1138, 1139, 1366, 2276
Bsa29I	ATCGAT	3 cut(s)	1500, 1839, 2913
BsaAI	YACGTR	1 cut(s)	975
BsaBI	GATNNNNATC	2 cut(s)	57, 435
BsaJI	CCNNGG	8 cut(s)	64, 451, 786, 1036, 1137, 1162, 1404, 2644
BsaWI	WCCGGW	1 cut(s)	1745
BsaXI	ACNNNNNCTCC	6 cut(s)	493, 522, 523, 552, 1596, 1626
Bse1I	ACTGG	7 cut(s)	165, 1062, 1349, 2289, 2441, 2994, 3030
Bse3DI	GCAATG	8 cut(s)	689, 1374, 1905, 2169, 2229, 2378, 2571, 2854
Bse8I	GATNNNNATC	2 cut(s)	57, 435
BseBI	CCWGG	7 cut(s)	310, 801, 864, 1037, 1164, 2646, 2905
BseCI	ATCGAT	3 cut(s)	1500, 1839, 2913
BseDI	CCNNGG	8 cut(s)	64, 451, 786, 1036, 1137, 1162, 1404, 2644
BseGI	GGATG	7 cut(s)	241, 301, 796, 1495, 2271, 2284, 2349
BseJI	GATNNNNATC	2 cut(s)	57, 435
BseMI	GCAATG	8 cut(s)	689, 1374, 1905, 2169, 2229, 2378, 2571, 2854
BseMII	CTCAG	2 cut(s)	1404, 1989
BseNI	ACTGG	7 cut(s)	165, 1062, 1349, 2289, 2441, 2994, 3030
BseRI	GAGGAG	4 cut(s)	527, 1223, 1724, 2525
BseXI	GCAGC	3 cut(s)	364, 1790, 2995
BsgI	GTGCAG	1 cut(s)	2407
BshFI	GGCC	9 cut(s)	419, 621, 1041, 1167, 1628, 2151, 2230, 2786, 2816
BshVI	ATCGAT	3 cut(s)	1500, 1839, 2913
BsiHKAI	GWGCWC	2 cut(s)	1073, 1703
BsiHKCI	CYCGRG	2 cut(s)	451, 1137
BsiSI	CCGG	6 cut(s)	452, 1138, 1365, 1746, 2192, 2276
BslFI	GGGAC	3 cut(s)	1837, 2271, 2430
BsmAI	GTCTC	5 cut(s)	89, 499, 784, 1994, 3019
BsmFI	GGGAC	3 cut(s)	1837, 2271, 2430
BsnI	GGCC	9 cut(s)	419, 621, 1041, 1167, 1628, 2151, 2230, 2786, 2816
BsoBI	CYCGRG	2 cut(s)	451, 1137
Bsp119I	TTCGAA	1 cut(s)	2764
Bsp1286I	GDGCHC	4 cut(s)	1073, 1095, 1412, 1703
Bsp19I	CCATGG	1 cut(s)	1404
BspACI	CCGC	6 cut(s)	228, 713, 1305, 2024, 2432, 2501
BspANI	GGCC	9 cut(s)	419, 621, 1041, 1167, 1628, 2151, 2230, 2786, 2816
BspCNI	CTCAG	2 cut(s)	1403, 1990
BspDI	ATCGAT	3 cut(s)	1500, 1839, 2913
BspHI	TCATGA	2 cut(s)	1239, 2367
BspLI	GGNNCC	5 cut(s)	510, 2229, 2499, 2730, 2989
BspMAI	CTGCAG	2 cut(s)	844, 1780
BspMI	ACCTGC	3 cut(s)	1783, 2116, 2800
BspPI	GGATC	7 cut(s)	325, 537, 835, 1123, 2982, 2995, 3034
BspT104I	TTCGAA	1 cut(s)	2764
BsrBI	CCGCTC	1 cut(s)	228
BsrDI	GCAATG	8 cut(s)	689, 1374, 1905, 2169, 2229, 2378, 2571, 2854
BsrI	ACTGG	7 cut(s)	165, 1062, 1349, 2289, 2441, 2994, 3030
BssECI	CCNNGG	8 cut(s)	64, 451, 786, 1036, 1137, 1162, 1404, 2644
BssNAI	GTATAC	1 cut(s)	2759
BssT1I	CCWWGG	1 cut(s)	1404
Bst1107I	GTATAC	1 cut(s)	2759
Bst2UI	CCWGG	7 cut(s)	310, 801, 864, 1037, 1164, 2646, 2905
Bst6I	CTCTTC	1 cut(s)	2139
BstBAI	YACGTR	1 cut(s)	975
BstBI	TTCGAA	1 cut(s)	2764
BstC8I	GCNNGC	4 cut(s)	339, 1204, 2484, 2845
BstDEI	CTNAG	6 cut(s)	327, 874, 1350, 1390, 1998, 2620
BstDSI	CCRYGG	1 cut(s)	1404
BstF5I	GGATG	7 cut(s)	241, 301, 796, 1495, 2271, 2284, 2349
BstHHI	GCGC	1 cut(s)	2488
BstMAI	GTCTC	5 cut(s)	89, 499, 784, 1994, 3019
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 1593, 2479, 2849
BstNI	CCWGG	7 cut(s)	310, 801, 864, 1037, 1164, 2646, 2905
BstNSI	RCATGY	2 cut(s)	967, 1535
BstSFI	CTRYAG	3 cut(s)	840, 1776, 3044
BstV1I	GCAGC	3 cut(s)	364, 1790, 2995
BstV2I	GAAGAC	4 cut(s)	995, 1956, 2110, 2876
BstX2I	RGATCY	4 cut(s)	330, 827, 2987, 3039
BstXI	CCANNNNNNTGG	3 cut(s)	2448, 2778, 2812
BstYI	RGATCY	4 cut(s)	330, 827, 2987, 3039
BstZ17I	GTATAC	1 cut(s)	2759
Bsu15I	ATCGAT	3 cut(s)	1500, 1839, 2913
BsuI	GTATCC	1 cut(s)	617
BsuRI	GGCC	9 cut(s)	419, 621, 1041, 1167, 1628, 2151, 2230, 2786, 2816
BsuTUI	ATCGAT	3 cut(s)	1500, 1839, 2913
BtgI	CCRYGG	1 cut(s)	1404
BtgZI	GCGATG	2 cut(s)	471, 2909
BtrI	CACGTC	1 cut(s)	1474
BtsCI	GGATG	7 cut(s)	241, 301, 796, 1495, 2271, 2284, 2349
BtsI	GCAGTG	3 cut(s)	490, 1937, 2419
BtsIMutI	CAGTG	9 cut(s)	157, 490, 955, 1358, 1744, 1937, 1995, 2126, 2419
BveI	ACCTGC	3 cut(s)	1783, 2116, 2800
Cac8I	GCNNGC	4 cut(s)	339, 1204, 2484, 2845
CaiI	CAGNNNCTG	2 cut(s)	1615, 3011
CciI	TCATGA	2 cut(s)	1239, 2367
CfoI	GCGC	1 cut(s)	2488
Cfr13I	GGNCC	7 cut(s)	558, 620, 1039, 1626, 1772, 2149, 2228
Cfr9I	CCCGGG	2 cut(s)	451, 1137
ClaI	ATCGAT	3 cut(s)	1500, 1839, 2913
CseI	GACGC	1 cut(s)	2479
DdeI	CTNAG	6 cut(s)	327, 874, 1350, 1390, 1998, 2620
DraI	TTTAAA	1 cut(s)	1465
DrdI	GACNNNNNNGTC	1 cut(s)	1360
DseDI	GACNNNNNNGTC	1 cut(s)	1360
EaeI	YGGCCR	1 cut(s)	2784
Eam1104I	CTCTTC	1 cut(s)	2139
EarI	CTCTTC	1 cut(s)	2139
Eco130I	CCWWGG	1 cut(s)	1404
Eco24I	GRGCYC	2 cut(s)	1095, 1412
Eco47I	GGWCC	2 cut(s)	558, 1772
Eco57I	CTGAAG	2 cut(s)	228, 2159
Eco88I	CYCGRG	2 cut(s)	451, 1137
EcoO109I	RGGNCCY	1 cut(s)	2228
EcoRI	GAATTC	1 cut(s)	96
EcoRII	CCWGG	7 cut(s)	308, 799, 862, 1035, 1162, 2644, 2903
EcoT14I	CCWWGG	1 cut(s)	1404
EcoT22I	ATGCAT	1 cut(s)	1430
EcoT38I	GRGCYC	2 cut(s)	1095, 1412
ErhI	CCWWGG	1 cut(s)	1404
FalI	AAGNNNNNCTT	2 cut(s)	456, 488
FaqI	GGGAC	3 cut(s)	1837, 2271, 2430
FauI	CCCGC	2 cut(s)	221, 2017
FbaI	TGATCA	2 cut(s)	475, 1177
FblI	GTMKAC	2 cut(s)	18, 2758
Fnu4HI	GCNGC	5 cut(s)	378, 713, 1779, 2501, 3009
FokI	GGATG	7 cut(s)	248, 308, 803, 1502, 2258, 2291, 2336
FriOI	GRGCYC	2 cut(s)	1095, 1412
Fsp4HI	GCNGC	5 cut(s)	378, 713, 1779, 2501, 3009
FspBI	CTAG	9 cut(s)	81, 252, 729, 833, 1118, 1716, 1979, 2175, 2714
GlaI	GCGC	1 cut(s)	2487
GluI	GCNGC	5 cut(s)	378, 713, 1779, 2501, 3009
GsuI	CTGGAG	3 cut(s)	33, 1329, 3013
HaeIII	GGCC	9 cut(s)	419, 621, 1041, 1167, 1628, 2151, 2230, 2786, 2816
HapII	CCGG	6 cut(s)	452, 1138, 1365, 1746, 2192, 2276
HgaI	GACGC	1 cut(s)	2479
HhaI	GCGC	1 cut(s)	2488
Hin6I	GCGC	1 cut(s)	2486
HinP1I	GCGC	1 cut(s)	2486
HincII	GTYRAC	4 cut(s)	19, 594, 1419, 1471
HindII	GTYRAC	4 cut(s)	19, 594, 1419, 1471
HindIII	AAGCTT	3 cut(s)	520, 1542, 2589
HpaII	CCGG	6 cut(s)	452, 1138, 1365, 1746, 2192, 2276
HphI	GGTGA	8 cut(s)	186, 815, 878, 902, 1393, 2090, 2293, 2794
Hpy166II	GTNNAC	9 cut(s)	19, 176, 594, 893, 1419, 1471, 2032, 2301, 2759
Hpy8I	GTNNAC	9 cut(s)	19, 176, 594, 893, 1419, 1471, 2032, 2301, 2759
Hpy99I	CGWCG	2 cut(s)	1276, 2473
HpyAV	CCTTC	8 cut(s)	141, 307, 578, 595, 611, 635, 2069, 2134
HpyCH4IV	ACGT	3 cut(s)	974, 1274, 1473
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 1593, 2479, 2849
HpyF3I	CTNAG	6 cut(s)	327, 874, 1350, 1390, 1998, 2620
HpySE526I	ACGT	3 cut(s)	974, 1274, 1473
HspAI	GCGC	1 cut(s)	2486
Ksp22I	TGATCA	2 cut(s)	475, 1177
Lsp1109I	GCAGC	3 cut(s)	364, 1790, 2995
LweI	GCATC	7 cut(s)	200, 408, 1566, 1921, 2517, 2658, 2886
MaeI	CTAG	9 cut(s)	81, 252, 729, 833, 1118, 1716, 1979, 2175, 2714
MaeII	ACGT	3 cut(s)	974, 1274, 1473
MaeIII	GTNAC	6 cut(s)	682, 803, 970, 2386, 2398, 2464
MbiI	CCGCTC	1 cut(s)	228
MflI	RGATCY	4 cut(s)	330, 827, 2987, 3039
MhlI	GDGCHC	4 cut(s)	1073, 1095, 1412, 1703
MlyI	GAGTC	6 cut(s)	24, 508, 830, 1108, 2069, 2678
MmeI	TCCRAC	4 cut(s)	536, 631, 2052, 2838
Mph1103I	ATGCAT	1 cut(s)	1430
MroXI	GAANNNNTTC	2 cut(s)	100, 371
MseI	TTAA	8 cut(s)	744, 927, 1445, 1464, 1731, 1961, 2682, 2709
MslI	CAYNNNNRTG	5 cut(s)	674, 1536, 2131, 2776, 2810
MspA1I	CMGCKG	3 cut(s)	769, 1307, 3008
MspI	CCGG	6 cut(s)	452, 1138, 1365, 1746, 2192, 2276
MvaI	CCWGG	7 cut(s)	310, 801, 864, 1037, 1164, 2646, 2905
MwoI	GCNNNNNNNGC	4 cut(s)	323, 1593, 2479, 2849
NciI	CCSGG	6 cut(s)	452, 453, 1138, 1139, 1366, 2276
NcoI	CCATGG	1 cut(s)	1404
NlaIV	GGNNCC	5 cut(s)	510, 2229, 2499, 2730, 2989
NmeAIII	GCCGAG	1 cut(s)	89
NmuCI	GTSAC	3 cut(s)	803, 2386, 2464
NsiI	ATGCAT	1 cut(s)	1430
NspI	RCATGY	2 cut(s)	967, 1535
NspV	TTCGAA	1 cut(s)	2764
PagI	TCATGA	2 cut(s)	1239, 2367
PaqCI	CACCTGC	1 cut(s)	2800
PciI	ACATGT	1 cut(s)	1531
PdmI	GAANNNNTTC	2 cut(s)	100, 371
PfeI	GAWTC	9 cut(s)	280, 869, 1386, 1453, 1557, 2188, 2326, 2546, 3020
PflMI	CCANNNNNTGG	1 cut(s)	629
PfoI	TCCNGGA	2 cut(s)	1364, 2274
PkrI	GCNGC	5 cut(s)	379, 714, 1780, 2502, 3010
PleI	GAGTC	6 cut(s)	23, 508, 829, 1108, 2068, 2677
PpsI	GAGTC	6 cut(s)	23, 508, 829, 1108, 2068, 2677
Ppu21I	YACGTR	1 cut(s)	975
PscI	ACATGT	1 cut(s)	1531
Psp6I	CCWGG	7 cut(s)	308, 799, 862, 1035, 1162, 2644, 2903
PspGI	CCWGG	7 cut(s)	308, 799, 862, 1035, 1162, 2644, 2903
PspN4I	GGNNCC	5 cut(s)	510, 2229, 2499, 2730, 2989
PspPI	GGNCC	7 cut(s)	558, 620, 1039, 1626, 1772, 2149, 2228
PstI	CTGCAG	2 cut(s)	844, 1780
PstNI	CAGNNNCTG	2 cut(s)	1615, 3011
PsuI	RGATCY	4 cut(s)	330, 827, 2987, 3039
PvuII	CAGCTG	2 cut(s)	769, 3008
RseI	CAYNNNNRTG	5 cut(s)	674, 1536, 2131, 2776, 2810
SalI	GTCGAC	1 cut(s)	17
SaqAI	TTAA	8 cut(s)	744, 927, 1445, 1464, 1731, 1961, 2682, 2709
SatI	GCNGC	5 cut(s)	378, 713, 1779, 2501, 3009
Sau96I	GGNCC	7 cut(s)	558, 620, 1039, 1626, 1772, 2149, 2228
ScaI	AGTACT	2 cut(s)	256, 2067
SchI	GAGTC	6 cut(s)	24, 508, 830, 1108, 2069, 2678
SduI	GDGCHC	4 cut(s)	1073, 1095, 1412, 1703
SfaNI	GCATC	7 cut(s)	200, 408, 1566, 1921, 2517, 2658, 2886
SfcI	CTRYAG	3 cut(s)	840, 1776, 3044
SfuI	TTCGAA	1 cut(s)	2764
SinI	GGWCC	2 cut(s)	558, 1772
SmaI	CCCGGG	2 cut(s)	453, 1139
SmiMI	CAYNNNNRTG	5 cut(s)	674, 1536, 2131, 2776, 2810
SmlI	CTYRAG	3 cut(s)	23, 1184, 1898
SmoI	CTYRAG	3 cut(s)	23, 1184, 1898
SpeI	ACTAGT	3 cut(s)	80, 251, 728
SsiI	CCGC	6 cut(s)	228, 713, 1305, 2024, 2432, 2501
SspI	AATATT	4 cut(s)	346, 1788, 1965, 2308
SspMI	CTAG	9 cut(s)	81, 252, 729, 833, 1118, 1716, 1979, 2175, 2714
StyI	CCWWGG	1 cut(s)	1404
TaiI	ACGT	3 cut(s)	977, 1277, 1476
TaqI	TCGA	7 cut(s)	18, 497, 1097, 1500, 1839, 2764, 2913
TatI	WGTACW	5 cut(s)	173, 254, 1025, 2065, 2346
TauI	GCSGC	2 cut(s)	715, 2503
TfiI	GAWTC	9 cut(s)	280, 869, 1386, 1453, 1557, 2188, 2326, 2546, 3020
Tru1I	TTAA	8 cut(s)	744, 927, 1445, 1464, 1731, 1961, 2682, 2709
Tru9I	TTAA	8 cut(s)	744, 927, 1445, 1464, 1731, 1961, 2682, 2709
TscAI	CASTG	9 cut(s)	157, 490, 955, 1365, 1744, 1944, 2002, 2133, 2426
TseFI	GTSAC	3 cut(s)	803, 2386, 2464
TseI	GCWGC	3 cut(s)	377, 1778, 3008
Tsp45I	GTSAC	3 cut(s)	803, 2386, 2464
TspDTI	ATGAA	8 cut(s)	93, 474, 924, 1001, 1228, 1256, 1506, 2963
TspGWI	ACGGA	2 cut(s)	909, 1121
TspMI	CCCGGG	2 cut(s)	451, 1137
TspRI	CASTG	9 cut(s)	157, 490, 955, 1365, 1744, 1944, 2002, 2133, 2426
Van91I	CCANNNNNTGG	1 cut(s)	629
VpaK11BI	GGWCC	2 cut(s)	558, 1772
XapI	RAATTY	3 cut(s)	96, 1658, 2436
XceI	RCATGY	2 cut(s)	967, 1535
XcmI	CCANNNNNNNNNTGG	2 cut(s)	630, 1636
XmaI	CCCGGG	2 cut(s)	451, 1137
XmiI	GTMKAC	2 cut(s)	18, 2758
XmnI	GAANNNNTTC	2 cut(s)	100, 371
XspI	CTAG	9 cut(s)	81, 252, 729, 833, 1118, 1716, 1979, 2175, 2714
ZrmI	AGTACT	2 cut(s)	256, 2067
Zsp2I	ATGCAT	1 cut(s)	1430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.