Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Forward (+)

17936593 .. 17940124

Gene Structure 3532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032697

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGTTTGCGATCATCATACTTGTGGTTGTAGCTACAATGCGCAAGTATTTCTCCGTGTCGCGTCCCAGGAATACTAGTCAAATGAAAGCTAAGGTCCGCAGAGGAGGAAACCTGGTTCATATCTCCCCATCGGATGTTGTGCCAGGTGACATAGTATGCTTGGAATTGGAATCTCTAGTTCCTGCTGATGGTTTGTTCGTTTCGACTGGTGAATCCTTAGTGTTGGAAGATGGTATGGAATTTCCAATCGTCGATGACAGCAATCCTTTTCTGGTTTATGGTGCAAGGGTGGTAAATGGTAATGGTCGCATGTTGGTTACTTGTGTGGGGATGAAGACAACATTAGGTGAGCTGATGGGCCAAGTTAGATGTACACCTAACCAGGACCAATTACCAGTTCAACTTGATAACTTGAGCACAAGGTTGCAGAATGTTGGGCTCTTGATCACAATTTTCATGACTCTAGTGCTTATCATTCGTTCCGTGGTTCTAAAGGTTAATGAGTACCCTGGCCTCCAAGCTGATCAGTTCAAGGCTAAAACAACTACAAGCGAGGAGCTAATCAATGTCATTGGCAAATTTTTCATGAAATCAAGTAGGCAGATTAGTGTGTTGGCGACATATCTGCCTTTATTGATTGTAGGCTTAGCGGAAGGAGTACCTTTTTCAGTTGCACTTGCCATCAATTATTGGACTAAGACCACGCTGTCTGGGAAAGCTAGTGCTCAAAGAATCTTAGCTTGTTTCACCATGGGCTATGTGTTAAATATTTGCATTGGTGATGGGCTAACTTTGAACCCTGTACTTGAAGTCTACGTGAGCTGTGATGGGGATCAAATAATCGATACAGAGAGTGTTGCTGGTATTGACAGACACGTTCGTGAAGCTTTATACAAAGGAATTAGCACGCCACTTTTGATGCCGTTAAGCCCTTGTAGTTCAACAGAACACCGGGTCCTGCTACCGTGGGCCAAATCTAATTTGGGTATGGACAATGAGAATTTATTGCAAAATTGCACCATTGTGGGGAGCGAAAAGTTGTGCACCGATGAGGAGACTAGTGGAGTTCTGATGAAGGACAGTGAAACTGGAGATATGTGCTTTTATTGGAATGGACCTGCAACAACAATATTGCCCATGTGTTCCAAATACTATGACAGCAAGGGGACAACAAAGCTCATGGATGAACAGAAGAAACGTGATTTTAAAGAAATTATGGGGAACATGCAGTCCAAACATGTCAAGACCATTGCATTTGCGTACAAGAAGATTGATGCTCTAATGCCTAAAGAAGGTAACAGCTTAATATTGATAGGACTGCTAGGTGTGAAGTGTTGCACTGAGACAGTGGAAGCACTGGAAGTTCTACAAAAAGCAGGAGTGGACATCATACAGTTCCCAAAAGATAATGAGTCAGTACTGTTGGAAGGTGAAAGTCCTGTCTATGGAATGGGAAGACCTGCTGACAAGCTCCACACACTGCAACGTCTGAAGGAAGAGGGCCATGTTGTAGCAATGGTTGGGGCTAGAACAAATGAGACTCCTGCTCTAAAAGAAGCGGATGTGGGGATTGCAATAGGGACTTGCATTAGTGAAATGGCAAGAGAGGGTTCTGATCTCATCATCTCCGATTGCGGTCTCAGTTTCTTGGTCAACATTATTCGGATCGGAAGATGCATTCACTACAACGTTCAGAAGTACATCCAAGTTGAGCTCACCATGAATATATCATTGCTTGTGACAATCTCGATCACTACAACGTCCTTGGGACATTGCACAATTGGGGCAATCGAAGTAGTGTGGGCAAATATGGTTGTAACACTATGTGGGCTTGCGCTACTGGTTGAGCCGCCAACAGAGGAGCAGATGGAACAGCCGCCGGTAAAACAAACTGAATCTCTCATTAGCAAGACAATGTGGAGAAACATATTACTTCAAGCTTTATATCAGGCTGCCATCTTGGTCACCTTTCAGTTCAAATATAAAGCTCTCCCAGGCATCAACGAGAAGATTATGGAGTCCATAGCTTTCAGCAGTTATGTTCTTTGTCAGGTATTTAATCAAGTCAGCTCAAGGGAGCTAGAGAAGAAAAATGTGTTCAAAGGTATACTTCGAACTCGATGGTTATGGGTGGCTGTGGGGGTTAGTATCACGATGCAGGTGGCTTTTGTTGAGATTGAACATAAGGTTGCTGGCAATGCAAGGTTGAATTGGGCACAATGGGGTGTCTGTCTTTTAATAGCGATGGTTTCCTGGCCAATCGATTTGGCTGGGAAATGCGTATGGGGTGTCATCATGAAGATTAGAATGCTTGAAACTGATATTGGATCCACCAGTATGAGGTCCTCTGTTGTCTCAGAATCAGCTTCTAATCGAGAGCTCCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

797

Amino Acids

87.65

Weight (kDa)

6.0

Isoelectric Point (pI)

36.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	26 - 122	6.1e-11	P-type ATPase actuator domain
Cation_ATPase	PF13246	352 - 442	5.7e-06	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	595 - 759	1.7e-35	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2149
AasI	GACNNNNNNGTC	1 cut(s)	706
Acc16I	TGCGCA	1 cut(s)	41
Acc36I	ACCTGC	3 cut(s)	1126, 1468, 2149
AccI	GTMKAC	2 cut(s)	813, 2107
AccII	CGCG	1 cut(s)	61
AciI	CCGC	6 cut(s)	97, 650, 1559, 1635, 1850, 1877
AclI	AACGTT	1 cut(s)	1689
AclWI	GGATC	4 cut(s)	840, 1673, 2322, 2335
AcoI	YGGCCR	1 cut(s)	2255
AcsI	RAATTY	3 cut(s)	239, 578, 1000
AcuI	CTGAAG	1 cut(s)	1511
AdeI	CACNNNGTG	1 cut(s)	1826
AfaI	GTAC	7 cut(s)	373, 506, 660, 804, 1262, 1419, 1700
AfiI	CCNNNNNNNGG	5 cut(s)	188, 1026, 1292, 1445, 2340
AflIII	ACRYGT	2 cut(s)	874, 1237
AhlI	ACTAGT	2 cut(s)	74, 1058
AjnI	CCWGG	7 cut(s)	65, 111, 142, 381, 508, 1993, 2252
AjuI	GAANNNNNNNTTGG	4 cut(s)	381, 413, 2307, 2339
AleI	CACNNNNGTG	2 cut(s)	879, 1022
AloI	GAACNNNNNNTCC	6 cut(s)	99, 131, 939, 971, 1214, 1246
Alw21I	GWGCWC	5 cut(s)	419, 727, 1046, 1716, 2382
Alw26I	GTCTC	5 cut(s)	1049, 1337, 1532, 1643, 2359
Alw44I	GTGCAC	1 cut(s)	1042
AlwI	GGATC	4 cut(s)	840, 1673, 2322, 2335
AoxI	GGCC	5 cut(s)	358, 511, 969, 1501, 2255
ApaLI	GTGCAC	1 cut(s)	1042
ApeKI	GCWGC	1 cut(s)	1952
ApoI	RAATTY	3 cut(s)	239, 578, 1000
AspLEI	GCGC	2 cut(s)	42, 1837
AspS9I	GGNCC	8 cut(s)	94, 358, 385, 955, 969, 1115, 1501, 2343
AsuC2I	CCSGG	1 cut(s)	953
AsuHPI	GGTGA	8 cut(s)	158, 221, 359, 739, 791, 1442, 1708, 1957
AsuII	TTCGAA	1 cut(s)	2113
AvaII	GGWCC	5 cut(s)	94, 385, 955, 1115, 2343
BaeGI	GKGCMC	2 cut(s)	1046, 2218
BalI	TGGCCA	1 cut(s)	2257
BamHI	GGATCC	1 cut(s)	2327
BanII	GRGCYC	3 cut(s)	441, 1716, 2382
BbsI	GAAGAC	2 cut(s)	341, 1462
Bbv12I	GWGCWC	5 cut(s)	419, 727, 1046, 1716, 2382
BbvI	GCAGC	1 cut(s)	1939
BceAI	ACGGC	1 cut(s)	907
BcgI	CGANNNNNNTGC	2 cut(s)	607, 641
BciT130I	CCWGG	7 cut(s)	67, 113, 144, 383, 510, 1995, 2254
BclI	TGATCA	2 cut(s)	444, 523
BcnI	CCSGG	1 cut(s)	953
BcoDI	GTCTC	5 cut(s)	1049, 1337, 1532, 1643, 2359
BcuI	ACTAGT	2 cut(s)	74, 1058
BfaI	CTAG	9 cut(s)	75, 176, 464, 720, 1059, 1322, 1527, 2081, 2384
BfuAI	ACCTGC	3 cut(s)	1126, 1468, 2149
BisI	GCNGC	3 cut(s)	1850, 1877, 1953
BlpI	GCTNAGC	1 cut(s)	646
BlsI	GCNGC	3 cut(s)	1851, 1878, 1954
BmcAI	AGTACT	1 cut(s)	1419
Bme1390I	CCNGG	8 cut(s)	67, 113, 144, 383, 510, 953, 1995, 2254
Bme18I	GGWCC	5 cut(s)	94, 385, 955, 1115, 2343
BmgT120I	GGNCC	8 cut(s)	94, 358, 385, 955, 969, 1115, 1501, 2343
BmiI	GGNNCC	2 cut(s)	956, 2329
BmrFI	CCNGG	8 cut(s)	67, 113, 144, 383, 510, 953, 1995, 2254
BmsI	GCATC	5 cut(s)	909, 1264, 1664, 2007, 2145
BpiI	GAAGAC	2 cut(s)	341, 1462
BpmI	CTGGAG	1 cut(s)	1110
Bpu10I	CCTNAGC	1 cut(s)	90
Bpu1102I	GCTNAGC	1 cut(s)	646
Bpu14I	TTCGAA	1 cut(s)	2113
BpuEI	CTTGAG	2 cut(s)	433, 2056
BpuMI	CCSGG	1 cut(s)	953
Bsa29I	ATCGAT	2 cut(s)	843, 2262
BsaAI	YACGTR	1 cut(s)	817
BsaBI	GATNNNNATC	1 cut(s)	831
BsaI	GGTCTC	1 cut(s)	1643
BsaJI	CCNNGG	7 cut(s)	65, 483, 508, 750, 965, 1764, 1993
Bsc4I	CCNNNNNNNGG	5 cut(s)	188, 1026, 1292, 1445, 2340
Bse118I	RCCGGY	1 cut(s)	1879
Bse1I	ACTGG	6 cut(s)	211, 395, 1093, 1362, 1845, 2334
Bse3DI	GCAATG	5 cut(s)	1248, 1521, 1730, 1771, 2203
Bse8I	GATNNNNATC	1 cut(s)	831
BseBI	CCWGG	7 cut(s)	67, 113, 144, 383, 510, 1995, 2254
BseCI	ATCGAT	2 cut(s)	843, 2262
BseDI	CCNNGG	7 cut(s)	65, 483, 508, 750, 965, 1764, 1993
BseGI	GGATG	5 cut(s)	139, 336, 1189, 1567, 1701
BseJI	GATNNNNATC	1 cut(s)	831
BseLI	CCNNNNNNNGG	5 cut(s)	188, 1026, 1292, 1445, 2340
BseMI	GCAATG	5 cut(s)	1248, 1521, 1730, 1771, 2203
BseMII	CTCAG	3 cut(s)	1332, 1654, 2370
BseNI	ACTGG	6 cut(s)	211, 395, 1093, 1362, 1845, 2334
BseRI	GAGGAG	4 cut(s)	117, 569, 1067, 1874
BseSI	GKGCMC	2 cut(s)	1046, 2218
BseXI	GCAGC	1 cut(s)	1939
BseYI	CCCAGC	1 cut(s)	2270
Bsh1236I	CGCG	1 cut(s)	61
BshFI	GGCC	5 cut(s)	360, 513, 971, 1503, 2257
BshVI	ATCGAT	2 cut(s)	843, 2262
BsiHKAI	GWGCWC	5 cut(s)	419, 727, 1046, 1716, 2382
BsiSI	CCGG	2 cut(s)	952, 1880
BslFI	GGGAC	4 cut(s)	48, 1180, 1594, 1782
BslI	CCNNNNNNNGG	5 cut(s)	188, 1026, 1292, 1445, 2340
BsmAI	GTCTC	5 cut(s)	1049, 1337, 1532, 1643, 2359
BsmFI	GGGAC	4 cut(s)	48, 1180, 1594, 1782
BsmI	GAATGC	2 cut(s)	1677, 2313
BsnI	GGCC	5 cut(s)	360, 513, 971, 1503, 2257
Bso31I	GGTCTC	1 cut(s)	1643
Bsp119I	TTCGAA	1 cut(s)	2113
Bsp1286I	GDGCHC	7 cut(s)	419, 441, 727, 1046, 1716, 2218, 2382
Bsp1407I	TGTACA	1 cut(s)	371
Bsp143I	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
Bsp1720I	GCTNAGC	1 cut(s)	646
Bsp19I	CCATGG	1 cut(s)	750
BspACI	CCGC	6 cut(s)	97, 650, 1559, 1635, 1850, 1877
BspANI	GGCC	5 cut(s)	360, 513, 971, 1503, 2257
BspCNI	CTCAG	3 cut(s)	1333, 1653, 2369
BspDI	ATCGAT	2 cut(s)	843, 2262
BspFNI	CGCG	1 cut(s)	61
BspHI	TCATGA	3 cut(s)	456, 585, 2295
BspLI	GGNNCC	2 cut(s)	956, 2329
BspMI	ACCTGC	3 cut(s)	1126, 1468, 2149
BspPI	GGATC	4 cut(s)	840, 1673, 2322, 2335
BspT104I	TTCGAA	1 cut(s)	2113
BspTNI	GGTCTC	1 cut(s)	1643
BsrDI	GCAATG	5 cut(s)	1248, 1521, 1730, 1771, 2203
BsrFI	RCCGGY	1 cut(s)	1879
BsrGI	TGTACA	1 cut(s)	371
BsrI	ACTGG	6 cut(s)	211, 395, 1093, 1362, 1845, 2334
BssAI	RCCGGY	1 cut(s)	1879
BssECI	CCNNGG	7 cut(s)	65, 483, 508, 750, 965, 1764, 1993
BssMI	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
BssNAI	GTATAC	1 cut(s)	2108
BssT1I	CCWWGG	2 cut(s)	750, 1764
Bst1107I	GTATAC	1 cut(s)	2108
Bst2UI	CCWGG	7 cut(s)	67, 113, 144, 383, 510, 1995, 2254
Bst4CI	ACNGT	5 cut(s)	966, 1082, 1348, 1395, 1422
Bst6I	CTCTTC	1 cut(s)	1491
BstAUI	TGTACA	1 cut(s)	371
BstBAI	YACGTR	1 cut(s)	817
BstBI	TTCGAA	1 cut(s)	2113
BstC8I	GCNNGC	3 cut(s)	908, 1833, 2194
BstDEI	CTNAG	8 cut(s)	90, 217, 646, 696, 736, 1341, 1640, 2356
BstDSI	CCRYGG	3 cut(s)	483, 750, 965
BstEII	GGTNACC	1 cut(s)	1963
BstENI	CCTNNNNNAGG	1 cut(s)	1290
BstF5I	GGATG	5 cut(s)	139, 336, 1189, 1567, 1701
BstFNI	CGCG	1 cut(s)	61
BstHHI	GCGC	2 cut(s)	42, 1837
BstKTI	GATC	8 cut(s)	12, 447, 526, 835, 1618, 1668, 1752, 2330
BstMAI	GTCTC	5 cut(s)	1049, 1337, 1532, 1643, 2359
BstMBI	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
BstMWI	GCNNNNNNNGC	1 cut(s)	2198
BstNI	CCWGG	7 cut(s)	67, 113, 144, 383, 510, 1995, 2254
BstNSI	RCATGY	3 cut(s)	313, 1228, 1241
BstPI	GGTNACC	1 cut(s)	1963
BstSCI	CCNGG	8 cut(s)	65, 111, 142, 381, 508, 951, 1993, 2252
BstSLI	GKGCMC	2 cut(s)	1046, 2218
BstUI	CGCG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	1939
BstV2I	GAAGAC	2 cut(s)	341, 1462
BstX2I	RGATCY	1 cut(s)	2327
BstYI	RGATCY	1 cut(s)	2327
BstZ17I	GTATAC	1 cut(s)	2108
Bsu15I	ATCGAT	2 cut(s)	843, 2262
BsuRI	GGCC	5 cut(s)	360, 513, 971, 1503, 2257
BsuTUI	ATCGAT	2 cut(s)	843, 2262
BtgI	CCRYGG	3 cut(s)	483, 750, 965
BtgZI	GCGATG	1 cut(s)	2258
BtsCI	GGATG	5 cut(s)	139, 336, 1189, 1567, 1701
BtsI	GCAGTG	1 cut(s)	1478
BtsIMutI	CAGTG	5 cut(s)	1087, 1338, 1353, 1355, 1478
BveI	ACCTGC	3 cut(s)	1126, 1468, 2149
Cac8I	GCNNGC	3 cut(s)	908, 1833, 2194
CciI	TCATGA	3 cut(s)	456, 585, 2295
CfoI	GCGC	2 cut(s)	42, 1837
Cfr10I	RCCGGY	1 cut(s)	1879
Cfr13I	GGNCC	8 cut(s)	94, 358, 385, 955, 969, 1115, 1501, 2343
ClaI	ATCGAT	2 cut(s)	843, 2262
CseI	GACGC	1 cut(s)	50
CsiI	ACCWGGT	1 cut(s)	111
Csp6I	GTAC	7 cut(s)	372, 505, 659, 803, 1261, 1418, 1699
CviQI	GTAC	7 cut(s)	372, 505, 659, 803, 1261, 1418, 1699
DdeI	CTNAG	8 cut(s)	90, 217, 646, 696, 736, 1341, 1640, 2356
DpnI	GATC	8 cut(s)	11, 446, 525, 834, 1617, 1667, 1751, 2329
DpnII	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
DraI	TTTAAA	1 cut(s)	1207
DraIII	CACNNNGTG	1 cut(s)	1826
DrdI	GACNNNNNNGTC	1 cut(s)	706
DseDI	GACNNNNNNGTC	1 cut(s)	706
EaeI	YGGCCR	1 cut(s)	2255
Eam1104I	CTCTTC	1 cut(s)	1491
EarI	CTCTTC	1 cut(s)	1491
Ecl136II	GAGCTC	2 cut(s)	1714, 2380
Eco130I	CCWWGG	2 cut(s)	750, 1764
Eco24I	GRGCYC	3 cut(s)	441, 1716, 2382
Eco31I	GGTCTC	1 cut(s)	1643
Eco47I	GGWCC	5 cut(s)	94, 385, 955, 1115, 2343
Eco53kI	GAGCTC	2 cut(s)	1714, 2380
Eco57I	CTGAAG	1 cut(s)	1511
Eco91I	GGTNACC	1 cut(s)	1963
EcoICRI	GAGCTC	2 cut(s)	1714, 2380
EcoNI	CCTNNNNNAGG	1 cut(s)	1290
EcoO109I	RGGNCCY	2 cut(s)	955, 2343
EcoO65I	GGTNACC	1 cut(s)	1963
EcoRII	CCWGG	7 cut(s)	65, 111, 142, 381, 508, 1993, 2252
EcoT14I	CCWWGG	2 cut(s)	750, 1764
EcoT22I	ATGCAT	1 cut(s)	1679
EcoT38I	GRGCYC	3 cut(s)	441, 1716, 2382
ErhI	CCWWGG	2 cut(s)	750, 1764
FalI	AAGNNNNNCTT	2 cut(s)	2094, 2126
FaqI	GGGAC	4 cut(s)	48, 1180, 1594, 1782
FbaI	TGATCA	2 cut(s)	444, 523
FblI	GTMKAC	2 cut(s)	813, 2107
Fnu4HI	GCNGC	3 cut(s)	1850, 1877, 1953
FokI	GGATG	5 cut(s)	146, 343, 1196, 1574, 1688
FriOI	GRGCYC	3 cut(s)	441, 1716, 2382
Fsp4HI	GCNGC	3 cut(s)	1850, 1877, 1953
FspBI	CTAG	9 cut(s)	75, 176, 464, 720, 1059, 1322, 1527, 2081, 2384
FspI	TGCGCA	1 cut(s)	41
GlaI	GCGC	2 cut(s)	41, 1836
GluI	GCNGC	3 cut(s)	1850, 1877, 1953
GsaI	CCCAGC	1 cut(s)	2274
GsuI	CTGGAG	1 cut(s)	1110
HaeIII	GGCC	5 cut(s)	360, 513, 971, 1503, 2257
HapII	CCGG	2 cut(s)	952, 1880
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	2 cut(s)	42, 1837
Hin6I	GCGC	2 cut(s)	40, 1835
HinP1I	GCGC	2 cut(s)	40, 1835
HincII	GTYRAC	1 cut(s)	1654
HindII	GTYRAC	1 cut(s)	1654
HindIII	AAGCTT	2 cut(s)	885, 1938
HinfI	GANTC	9 cut(s)	170, 212, 460, 732, 1412, 1540, 1895, 2018, 2360
HpaII	CCGG	2 cut(s)	952, 1880
HphI	GGTGA	8 cut(s)	158, 221, 359, 739, 791, 1442, 1708, 1957
Hpy166II	GTNNAC	6 cut(s)	374, 814, 1044, 1384, 1654, 2108
Hpy188I	TCNGA	9 cut(s)	133, 1071, 1491, 1615, 1630, 1665, 1670, 1695, 2359
Hpy188III	TCNNGA	9 cut(s)	442, 457, 586, 881, 1243, 1747, 2152, 2296, 2375
Hpy8I	GTNNAC	6 cut(s)	374, 814, 1044, 1384, 1654, 2108
Hpy99I	CGWCG	1 cut(s)	254
HpyAV	CCTTC	5 cut(s)	647, 1069, 1286, 1421, 1486
HpyCH4III	ACNGT	5 cut(s)	966, 1082, 1348, 1395, 1422
HpyCH4IV	ACGT	6 cut(s)	816, 876, 1198, 1486, 1689, 1760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	2198
HpyF3I	CTNAG	8 cut(s)	90, 217, 646, 696, 736, 1341, 1640, 2356
HpySE526I	ACGT	6 cut(s)	816, 876, 1198, 1486, 1689, 1760
HspAI	GCGC	2 cut(s)	40, 1835
Ksp22I	TGATCA	2 cut(s)	444, 523
Kzo9I	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
LmnI	GCTCC	6 cut(s)	556, 1029, 1476, 1861, 2077, 2385
Lsp1109I	GCAGC	1 cut(s)	1939
LweI	GCATC	5 cut(s)	909, 1264, 1664, 2007, 2145
MabI	ACCWGGT	1 cut(s)	111
MaeI	CTAG	9 cut(s)	75, 176, 464, 720, 1059, 1322, 1527, 2081, 2384
MaeII	ACGT	6 cut(s)	816, 876, 1198, 1486, 1689, 1760
MaeIII	GTNAC	6 cut(s)	146, 316, 1295, 1738, 1816, 1963
MalI	GATC	8 cut(s)	11, 446, 525, 834, 1617, 1667, 1751, 2329
MboI	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
MfeI	CAATTG	1 cut(s)	1779
MflI	RGATCY	1 cut(s)	2327
MhlI	GDGCHC	7 cut(s)	419, 441, 727, 1046, 1716, 2218, 2382
MlsI	TGGCCA	1 cut(s)	2257
MluNI	TGGCCA	1 cut(s)	2257
MlyI	GAGTC	4 cut(s)	454, 1421, 1534, 2027
MmeI	TCCRAC	2 cut(s)	204, 1404
Mox20I	TGGCCA	1 cut(s)	2257
Mph1103I	ATGCAT	1 cut(s)	1679
MscI	TGGCCA	1 cut(s)	2257
MseI	TTAA	7 cut(s)	498, 764, 926, 1206, 1304, 2058, 2237
MslI	CAYNNNNRTG	4 cut(s)	20, 879, 1022, 2336
Msp20I	TGGCCA	1 cut(s)	2257
MspI	CCGG	2 cut(s)	952, 1880
MspR9I	CCNGG	8 cut(s)	67, 113, 144, 383, 510, 953, 1995, 2254
MunI	CAATTG	1 cut(s)	1779
Mva1269I	GAATGC	2 cut(s)	1677, 2313
MvaI	CCWGG	7 cut(s)	67, 113, 144, 383, 510, 1995, 2254
MvnI	CGCG	1 cut(s)	61
MwoI	GCNNNNNNNGC	1 cut(s)	2198
NciI	CCSGG	1 cut(s)	953
NcoI	CCATGG	1 cut(s)	750
NdeII	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
NlaIV	GGNNCC	2 cut(s)	956, 2329
NmuCI	GTSAC	3 cut(s)	146, 1738, 1963
NsbI	TGCGCA	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	1679
NspI	RCATGY	3 cut(s)	313, 1228, 1241
NspV	TTCGAA	1 cut(s)	2113
OliI	CACNNNNGTG	2 cut(s)	879, 1022
PagI	TCATGA	3 cut(s)	456, 585, 2295
PaqCI	CACCTGC	1 cut(s)	2149
PciI	ACATGT	1 cut(s)	1237
PctI	GAATGC	2 cut(s)	1677, 2313
PfeI	GAWTC	5 cut(s)	170, 212, 732, 1895, 2360
PkrI	GCNGC	3 cut(s)	1851, 1878, 1954
PleI	GAGTC	4 cut(s)	454, 1420, 1534, 2026
PpsI	GAGTC	4 cut(s)	454, 1420, 1534, 2026
Ppu21I	YACGTR	1 cut(s)	817
PpuMI	RGGWCCY	2 cut(s)	955, 2343
PscI	ACATGT	1 cut(s)	1237
Psp124BI	GAGCTC	2 cut(s)	1716, 2382
Psp1406I	AACGTT	1 cut(s)	1689
Psp5II	RGGWCCY	2 cut(s)	955, 2343
Psp6I	CCWGG	7 cut(s)	65, 111, 142, 381, 508, 1993, 2252
PspEI	GGTNACC	1 cut(s)	1963
PspFI	CCCAGC	1 cut(s)	2270
PspGI	CCWGG	7 cut(s)	65, 111, 142, 381, 508, 1993, 2252
PspN4I	GGNNCC	2 cut(s)	956, 2329
PspPI	GGNCC	8 cut(s)	94, 358, 385, 955, 969, 1115, 1501, 2343
PspPPI	RGGWCCY	2 cut(s)	955, 2343
PsuI	RGATCY	1 cut(s)	2327
RsaI	GTAC	7 cut(s)	373, 506, 660, 804, 1262, 1419, 1700
RsaNI	GTAC	7 cut(s)	372, 505, 659, 803, 1261, 1418, 1699
RseI	CAYNNNNRTG	4 cut(s)	20, 879, 1022, 2336
SacI	GAGCTC	2 cut(s)	1716, 2382
SaqAI	TTAA	7 cut(s)	498, 764, 926, 1206, 1304, 2058, 2237
SatI	GCNGC	3 cut(s)	1850, 1877, 1953
Sau3AI	GATC	8 cut(s)	9, 444, 523, 832, 1615, 1665, 1749, 2327
Sau96I	GGNCC	8 cut(s)	94, 358, 385, 955, 969, 1115, 1501, 2343
ScaI	AGTACT	1 cut(s)	1419
SchI	GAGTC	4 cut(s)	454, 1421, 1534, 2027
ScrFI	CCNGG	8 cut(s)	67, 113, 144, 383, 510, 953, 1995, 2254
SduI	GDGCHC	7 cut(s)	419, 441, 727, 1046, 1716, 2218, 2382
SexAI	ACCWGGT	1 cut(s)	111
SfaNI	GCATC	5 cut(s)	909, 1264, 1664, 2007, 2145
SfuI	TTCGAA	1 cut(s)	2113
SinI	GGWCC	5 cut(s)	94, 385, 955, 1115, 2343
SmiMI	CAYNNNNRTG	4 cut(s)	20, 879, 1022, 2336
SmlI	CTYRAG	2 cut(s)	412, 2071
SmoI	CTYRAG	2 cut(s)	412, 2071
SpeI	ACTAGT	2 cut(s)	74, 1058
SsiI	CCGC	6 cut(s)	97, 650, 1559, 1635, 1850, 1877
SspI	AATATT	3 cut(s)	769, 1131, 1308
SspMI	CTAG	9 cut(s)	75, 176, 464, 720, 1059, 1322, 1527, 2081, 2384
SstI	GAGCTC	2 cut(s)	1716, 2382
StyD4I	CCNGG	8 cut(s)	65, 111, 142, 381, 508, 951, 1993, 2252
StyI	CCWWGG	2 cut(s)	750, 1764
TaaI	ACNGT	5 cut(s)	966, 1082, 1348, 1395, 1422
TaiI	ACGT	6 cut(s)	819, 879, 1201, 1489, 1692, 1763
TaqI	TCGA	9 cut(s)	203, 252, 843, 1748, 1791, 2113, 2119, 2262, 2374
TatI	WGTACW	4 cut(s)	371, 802, 1417, 1698
TauI	GCSGC	2 cut(s)	1852, 1879
TfiI	GAWTC	5 cut(s)	170, 212, 732, 1895, 2360
Tru1I	TTAA	7 cut(s)	498, 764, 926, 1206, 1304, 2058, 2237
Tru9I	TTAA	7 cut(s)	498, 764, 926, 1206, 1304, 2058, 2237
TscAI	CASTG	5 cut(s)	1087, 1345, 1353, 1362, 1485
TseFI	GTSAC	3 cut(s)	146, 1738, 1963
TseI	GCWGC	1 cut(s)	1952
Tsp45I	GTSAC	3 cut(s)	146, 1738, 1963
TspGWI	ACGGA	2 cut(s)	43, 472
TspRI	CASTG	5 cut(s)	1087, 1345, 1353, 1362, 1485
VneI	GTGCAC	1 cut(s)	1042
VpaK11BI	GGWCC	5 cut(s)	94, 385, 955, 1115, 2343
XagI	CCTNNNNNAGG	1 cut(s)	1290
XapI	RAATTY	3 cut(s)	239, 578, 1000
XceI	RCATGY	3 cut(s)	313, 1228, 1241
XcmI	CCANNNNNNNNNTGG	1 cut(s)	979
XmiI	GTMKAC	2 cut(s)	813, 2107
XspI	CTAG	9 cut(s)	75, 176, 464, 720, 1059, 1322, 1527, 2081, 2384
ZrmI	AGTACT	1 cut(s)	1419
Zsp2I	ATGCAT	1 cut(s)	1679

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.