Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

489377 .. 494115

Gene Structure 4739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG007600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3180 bp

ATGACAGACATCGCAAGCCCTGTGCACCAGTTCGACCTCGAGTCTCAGCATACAGTGTTGCTGAAAACCAGTAGTACTAACCCACCAATAGACCACTGGCGCTGGATTTATGTGATTCTCCAAGTGCGCAAACTCCTCATCTCATCCAGAGCCAAGAAACCTACAAACGGGTCTCAACCACCTCACCACCTCTCATCATCAGCTACAATCCCTTATGCTATTATCAGCACCAGCACTACTACTGGTGATGCAGACTTGCAACTGACATCAGGGACTACAGAAATCTTACCTGCCTCGCCTCAATTTTCTGGAGATGTCCATCGGATCGGGGAGGATGATAGTAGTACTGCTGCTACTGATGCAAAACTCCAGCATGCAAATATTGCCACGATAGTCACGGAGAAAGACTTTGAGTCTTTACAGAAGTTTGGATCCGTCCAAGGAATTGCAGAGGCACTTAATAGCGATTTACAGAATGGAATCCCAGGCAATGAAGAAGATGTGAGTTCTCGCCGCCCAGTCAGTGCCCTCTTAACCACACAGGCTCCTGTTCAAGGCTTCTTCAAACTGCTCCTACAGTCCAGCAACAACTACATCATTTTCCTTCTCTTGGTGGCTGCAGTGCTGTCGATTGGCTTTGGTATGAAGGAGGAAGGCCCAAGCACCGGTTGGTATGAAGGGGCCATCATAGCGTTTGTCATCATCATACTCGTTGTTGCGCCTTCCATACGAGACTTTTGGCTTCAAAATCCACAGAGCCATGCAATGAGACAGACTGCAGGGGCCATTAAAATGGTGGTTGAGGTCATCAGAGGGGGATCCCCATGTGAAATACCCACATGTGATGTTGTTTCAGGTGACATAGTGTGCTTGACAGGGGGATCTACAGTTCCCGGTGATGGTTTGTTTGTTTCTGGTGAGTTGTTTGTATTGGATGATGGTACAGTGGCAACCATTTATGACAAGAAACCATTCTTGTTCTATGGTTCAAAGGTGGTTGCTGGAAGTGGTCGCATGCTTGTAACGTCTGTGGGCATGGACACAGCATGGGGTGAGCTGATGAAGAAAGTAGCCAATACTCCTAACCGGGCTCATTTACCGGCTCAACTTGATAAGGTCAGCACAGGCACGCAGATTATAGGGATCTCAATCTCTATTCTCATCCTGGTAGTGTTGTTCTTCCGTTTCATGGTTGAAAGGGAAGACAATCACTCTGGCCTCCCAGACCTTAAGGGGAAGCCAACTGCAAGCAAGGAGATAATGAATTTAATTGAGAAAATTATGATGAAACCAAGTGGTCGGATCAGTATCCTAACGACATCTCTGGCTATATTCCTCGTAGGAGTAGTGGAAGGAATACCTCTTTTTGTTACACTTGCCATAAGGTATTGGAATAAGAAGACTTTATCTGGAAAGGCCACTGCTCGAGGGACTTTGGCGTGTGTCACCGTGGGCTCTATCACAACTATTTGCACTGACAAAACTGGAGTGCTGAAATTGTCAGTAGACAAGTGCTACATCGGGGATGAAGTCATAGAAACCGACTATGTCACTAGAATAGACACACATGTTCGTGAAGCTTTGTGCAATGGAATCAGCACACCCCTTCTGATGCCATCAAACCCTCATTGTAGCTCGAGAGAGGACCCGCTTCTTTCCTGGGCTTACCTCAATTTGGGAATGCAATATGAGATTTTGAGGCAAAATTGCACCATCCTGGAGATTAAAGGATTGAGCACCAACGATGAAGGCAGTGGAGTACTGATGAGAAGAAGCAGTGCTGACAACGAAGGAGATATGCGCTTGCATTGGAAAGGACCTGCAACAACAATATTAGCCATGTGTTCGCACTACAATGACAACAAAGGGGAAACAAAGGTCATGGATGAACAAAGTATATTGGTTTTTAACCAAATTATAGAGGGCATGCAGTCCAAATATCTCAAGACCATTGCATTTGCTTACAAACAGACTGAGGTTTCAATGCTAGAAGAAAACAGCTTAATCTTAATAGCACTGCTAGGTGTGAGGTATTCATGCTGCAGTGATATGGTGGAAGCTTGTAAACAAGCAGGAGTCAACATCGTATTGGTCTCAGAAGATAATGTTTCAGACCTGAAAGACATTGCTCGTGAGTGTGGAATATTTCTGAACCCAAAGAGATTGGAAGTTAAAGGTGAAAGTTTTCGAAATAGTGCCCAAGAAAACAGGATGGACGACATGGCAAATAAAATATGTGTGATGGGAAACTCCATTCCTTCTGACAGGCTCCTTTTGGTGCAATGTCTGAAAGAAAGAGGCCATGTCGTAGCAATGGTTGGAGTCGGAACAAATGATGCTCCAACTCTGAAAGAAGCTGATGTGGGCATTGCAATGGGGACTTGGAGTAGTGGAGTGGCAAGAGAGAGTTCTGACATCATCATCTGGGACGGAAATGTTAGTTTCTTGGTCACCATTATTGGGTGTGGAAGAAGCATATACTATAACATTCAGAAGTACATTCAACTTGAGCTCACCATGAATATATCATGGCTGTTGATAACATCCGCTACCACAATGTGTTTAGGACAAAGTGCAATTGCAGCCATACAATTGGTCTGGGCAAACATGATTGTGACTCTTCTAGGTGGGCTTGCTCTATTGATGGAGCCTCCAACAGAGGAACTAATGAAAAAGGCACCGGTCAAGCGAAATGAATCTCTCATTAGCAAGGCAATGTGGAGAAACATAGTCAGTCAAGCTTTATATCAGACTACCATCTTGGTCGCCTTTCAATTCAAAGGACCAGCTATCCCAGGCATCAGCAAGAAGGTCAGTGAGTCCATTGTTTTCAACAGTTTTGTTCTCTGTCAGGTATTCAATCAAGTGAATTCAAGGGAACTGGAGAAGAAAAACGTATTTAGGGGCATATTTCACAATCTATGGTTTTGGGTGGCTGTGGGTGCCATTCTTACCCTGCAGGTGAGTTTTGTTGAGATTGCACACATTCTGGCTGGCAATGCAAGGTTGAATTGGGCAGAGTGGGGTATCTGTCTTCTAATTGGGATGGTTTCATGGGCAATTGATTTGATTGTTAAGTCTGCAACCAGTTTCATAGGATTCATTAGAATGCTTATGACACCATCTAATGTTTCAGAATCCGCTTCTAATCTAGAGCTCCCACTCATTAACCCATCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1059

Amino Acids

115.63

Weight (kDa)

5.95

Isoelectric Point (pI)

35.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	266 - 357	8.9e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	558 - 662	7.6e-09	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	858 - 1026	5.1e-38	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2950
Acc16I	TGCGCA	1 cut(s)	128
Acc36I	ACCTGC	3 cut(s)	298, 1828, 2950
AccB1I	GGYRCC	2 cut(s)	2677, 2942
AccI	GTMKAC	1 cut(s)	1506
AciI	CCGC	4 cut(s)	514, 1649, 2547, 3141
AclWI	GGATC	8 cut(s)	332, 426, 439, 813, 826, 889, 1151, 1310
AcsI	RAATTY	2 cut(s)	1264, 2869
AdeI	CACNNNGTG	1 cut(s)	2559
AfaI	GTAC	5 cut(s)	76, 346, 943, 1761, 2498
AfiI	CCNNNNNNNGG	8 cut(s)	167, 554, 610, 665, 899, 1189, 1675, 2460
AflII	CTTAAG	1 cut(s)	1229
AflIII	ACRYGT	2 cut(s)	839, 1567
AgeI	ACCGGT	2 cut(s)	665, 2680
AhdI	GACNNNNNGTC	2 cut(s)	40, 412
AjnI	CCWGG	5 cut(s)	484, 1164, 1658, 1716, 2794
AloI	GAACNNNNNNTCC	2 cut(s)	873, 905
Alw21I	GWGCWC	4 cut(s)	27, 1739, 2514, 3159
Alw26I	GTCTC	5 cut(s)	48, 177, 726, 763, 2098
Alw44I	GTGCAC	1 cut(s)	23
AlwI	GGATC	8 cut(s)	332, 426, 439, 813, 826, 889, 1151, 1310
Ama87I	CYCGRG	3 cut(s)	38, 1425, 1636
AoxI	GGCC	6 cut(s)	655, 681, 783, 1216, 1416, 2299
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	4 cut(s)	350, 617, 2040, 2582
ApoI	RAATTY	2 cut(s)	1264, 2869
AsiGI	ACCGGT	2 cut(s)	665, 2680
Asp700I	GAANNNNTTC	2 cut(s)	971, 2184
AspLEI	GCGC	4 cut(s)	102, 129, 721, 1803
AspS9I	GGNCC	6 cut(s)	656, 681, 783, 1645, 1817, 2783
AsuC2I	CCSGG	2 cut(s)	894, 1088
AsuII	TTCGAA	1 cut(s)	2188
AvaI	CYCGRG	3 cut(s)	38, 1425, 1636
AvaII	GGWCC	3 cut(s)	1645, 1817, 2783
BaeGI	GKGCMC	3 cut(s)	27, 529, 2200
BamHI	GGATCC	2 cut(s)	431, 818
BanI	GGYRCC	2 cut(s)	2677, 2942
BanII	GRGCYC	4 cut(s)	1093, 1457, 2514, 3159
BauI	CACGAG	1 cut(s)	2130
BbsI	GAAGAC	3 cut(s)	1209, 1406, 3026
Bbv12I	GWGCWC	4 cut(s)	27, 1739, 2514, 3159
BbvI	GCAGC	4 cut(s)	337, 604, 2027, 2594
BcgI	CGANNNNNNTGC	2 cut(s)	609, 643
BciT130I	CCWGG	5 cut(s)	486, 1166, 1660, 1718, 2796
BciVI	GTATCC	1 cut(s)	1319
BcnI	CCSGG	2 cut(s)	894, 1088
BcoDI	GTCTC	5 cut(s)	48, 177, 726, 763, 2098
BfaI	CTAG	6 cut(s)	1554, 1988, 2021, 2624, 3152, 3178
BfmI	CTRYAG	7 cut(s)	276, 575, 618, 777, 885, 2041, 2957
BfoI	RGCGCY	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	1229
BfuAI	ACCTGC	3 cut(s)	298, 1828, 2950
BfuI	GTATCC	1 cut(s)	1319
BisI	GCNGC	5 cut(s)	351, 514, 618, 2041, 2583
BlsI	GCNGC	5 cut(s)	352, 515, 619, 2042, 2584
BmcAI	AGTACT	3 cut(s)	76, 346, 1761
Bme1390I	CCNGG	7 cut(s)	486, 894, 1088, 1166, 1660, 1718, 2796
Bme18I	GGWCC	3 cut(s)	1645, 1817, 2783
BmeRI	GACNNNNNGTC	2 cut(s)	40, 412
BmeT110I	CYCGRG	3 cut(s)	38, 1425, 1636
BmgT120I	GGNCC	6 cut(s)	656, 681, 783, 1645, 1817, 2783
BmrFI	CCNGG	7 cut(s)	486, 894, 1088, 1166, 1660, 1718, 2796
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	5 cut(s)	238, 349, 1602, 2326, 2808
BmuI	ACTGGG	1 cut(s)	512
BpiI	GAAGAC	3 cut(s)	1209, 1406, 3026
BpmI	CTGGAG	5 cut(s)	330, 353, 1506, 1739, 2903
Bpu14I	TTCGAA	1 cut(s)	2188
BpuEI	CTTGAG	2 cut(s)	1928, 2528
BpuMI	CCSGG	2 cut(s)	894, 1088
BsaBI	GATNNNNATC	3 cut(s)	318, 1148, 1307
BsaI	GGTCTC	2 cut(s)	177, 2098
BsaJI	CCNNGG	5 cut(s)	439, 484, 1449, 1659, 2794
BsaWI	WCCGGW	2 cut(s)	665, 2680
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	8 cut(s)	167, 554, 610, 665, 899, 1189, 1675, 2460
Bse118I	RCCGGY	3 cut(s)	665, 1099, 2680
Bse1I	ACTGG	8 cut(s)	28, 69, 101, 247, 518, 1489, 2886, 3087
Bse8I	GATNNNNATC	3 cut(s)	318, 1148, 1307
BseBI	CCWGG	5 cut(s)	486, 1166, 1660, 1718, 2796
BseDI	CCNNGG	5 cut(s)	439, 484, 1449, 1659, 2794
BseJI	GATNNNNATC	3 cut(s)	318, 1148, 1307
BseLI	CCNNNNNNNGG	8 cut(s)	167, 554, 610, 665, 899, 1189, 1675, 2460
BseMII	CTCAG	3 cut(s)	59, 1965, 2109
BseNI	ACTGG	8 cut(s)	28, 69, 101, 247, 518, 1489, 2886, 3087
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	3 cut(s)	27, 529, 2200
BseXI	GCAGC	4 cut(s)	337, 604, 2027, 2594
BshFI	GGCC	6 cut(s)	657, 683, 785, 1218, 1418, 2301
BshNI	GGYRCC	2 cut(s)	2677, 2942
BshTI	ACCGGT	2 cut(s)	665, 2680
BsiHKAI	GWGCWC	4 cut(s)	27, 1739, 2514, 3159
BsiHKCI	CYCGRG	3 cut(s)	38, 1425, 1636
BsiSI	CCGG	5 cut(s)	666, 894, 1087, 1100, 2681
BslFI	GGGAC	4 cut(s)	286, 1444, 2392, 2441
BslI	CCNNNNNNNGG	8 cut(s)	167, 554, 610, 665, 899, 1189, 1675, 2460
BsmAI	GTCTC	5 cut(s)	48, 177, 726, 763, 2098
BsmFI	GGGAC	4 cut(s)	286, 1444, 2392, 2441
BsmI	GAATGC	2 cut(s)	1686, 3114
BsnI	GGCC	6 cut(s)	657, 683, 785, 1218, 1418, 2301
Bso31I	GGTCTC	2 cut(s)	177, 2098
BsoBI	CYCGRG	3 cut(s)	38, 1425, 1636
Bsp119I	TTCGAA	1 cut(s)	2188
Bsp1286I	GDGCHC	8 cut(s)	27, 529, 1093, 1457, 1739, 2200, 2514, 3159
Bsp143I	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
BspACI	CCGC	4 cut(s)	514, 1649, 2547, 3141
BspANI	GGCC	6 cut(s)	657, 683, 785, 1218, 1418, 2301
BspCNI	CTCAG	3 cut(s)	58, 1966, 2108
BspMAI	CTGCAG	4 cut(s)	622, 781, 2045, 2961
BspMI	ACCTGC	3 cut(s)	298, 1828, 2950
BspPI	GGATC	8 cut(s)	332, 426, 439, 813, 826, 889, 1151, 1310
BspT104I	TTCGAA	1 cut(s)	2188
BspT107I	GGYRCC	2 cut(s)	2677, 2942
BspTI	CTTAAG	1 cut(s)	1229
BspTNI	GGTCTC	2 cut(s)	177, 2098
BsrFI	RCCGGY	3 cut(s)	665, 1099, 2680
BsrI	ACTGG	8 cut(s)	28, 69, 101, 247, 518, 1489, 2886, 3087
BssAI	RCCGGY	3 cut(s)	665, 1099, 2680
BssECI	CCNNGG	5 cut(s)	439, 484, 1449, 1659, 2794
BssMI	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
BssSI	CACGAG	1 cut(s)	2130
BssT1I	CCWWGG	1 cut(s)	439
Bst2BI	CACGAG	1 cut(s)	2130
Bst2UI	CCWGG	5 cut(s)	486, 1166, 1660, 1718, 2796
Bst4CI	ACNGT	6 cut(s)	55, 579, 889, 946, 1450, 2837
Bst6I	CTCTTC	1 cut(s)	2625
BstAFI	CTTAAG	1 cut(s)	1229
BstAPI	GCANNNNNTGC	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	2188
BstC8I	GCNNGC	9 cut(s)	16, 375, 1016, 1130, 1249, 1805, 1928, 2634, 2995
BstDEI	CTNAG	3 cut(s)	45, 1974, 2095
BstDSI	CCRYGG	1 cut(s)	1449
BstEII	GGTNACC	1 cut(s)	2449
BstENI	CCTNNNNNAGG	1 cut(s)	552
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	4 cut(s)	102, 129, 721, 1803
BstKTI	GATC	6 cut(s)	327, 434, 821, 884, 1146, 1305
BstMAI	GTCTC	5 cut(s)	48, 177, 726, 763, 2098
BstMBI	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
BstMWI	GCNNNNNNNGC	6 cut(s)	359, 383, 689, 2582, 2942, 2999
BstNI	CCWGG	5 cut(s)	486, 1166, 1660, 1718, 2796
BstNSI	RCATGY	5 cut(s)	377, 843, 1018, 1571, 1930
BstPI	GGTNACC	1 cut(s)	2449
BstSCI	CCNGG	7 cut(s)	484, 892, 1086, 1164, 1658, 1716, 2794
BstSFI	CTRYAG	7 cut(s)	276, 575, 618, 777, 885, 2041, 2957
BstSLI	GKGCMC	3 cut(s)	27, 529, 2200
BstV1I	GCAGC	4 cut(s)	337, 604, 2027, 2594
BstV2I	GAAGAC	3 cut(s)	1209, 1406, 3026
BstX2I	RGATCY	4 cut(s)	431, 818, 881, 1143
BstXI	CCANNNNNNTGG	2 cut(s)	793, 2593
BstYI	RGATCY	4 cut(s)	431, 818, 881, 1143
BsuI	GTATCC	1 cut(s)	1319
BsuRI	GGCC	6 cut(s)	657, 683, 785, 1218, 1418, 2301
BtgI	CCRYGG	1 cut(s)	1449
BtsI	GCAGTG	6 cut(s)	627, 1419, 1759, 1783, 2015, 2050
BveI	ACCTGC	3 cut(s)	298, 1828, 2950
Cac8I	GCNNGC	9 cut(s)	16, 375, 1016, 1130, 1249, 1805, 1928, 2634, 2995
CfoI	GCGC	4 cut(s)	102, 129, 721, 1803
Cfr10I	RCCGGY	3 cut(s)	665, 1099, 2680
Cfr13I	GGNCC	6 cut(s)	656, 681, 783, 1645, 1817, 2783
Csp6I	GTAC	5 cut(s)	75, 345, 942, 1760, 2497
CspAI	ACCGGT	2 cut(s)	665, 2680
CviQI	GTAC	5 cut(s)	75, 345, 942, 1760, 2497
DdeI	CTNAG	3 cut(s)	45, 1974, 2095
DpnI	GATC	6 cut(s)	326, 433, 820, 883, 1145, 1304
DpnII	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
DraIII	CACNNNGTG	1 cut(s)	2559
DriI	GACNNNNNGTC	2 cut(s)	40, 412
Eam1104I	CTCTTC	1 cut(s)	2625
Eam1105I	GACNNNNNGTC	2 cut(s)	40, 412
EarI	CTCTTC	1 cut(s)	2625
Ecl136II	GAGCTC	2 cut(s)	2512, 3157
Eco130I	CCWWGG	1 cut(s)	439
Eco24I	GRGCYC	4 cut(s)	1093, 1457, 2514, 3159
Eco31I	GGTCTC	2 cut(s)	177, 2098
Eco47I	GGWCC	3 cut(s)	1645, 1817, 2783
Eco53kI	GAGCTC	2 cut(s)	2512, 3157
Eco88I	CYCGRG	3 cut(s)	38, 1425, 1636
Eco91I	GGTNACC	1 cut(s)	2449
EcoICRI	GAGCTC	2 cut(s)	2512, 3157
EcoNI	CCTNNNNNAGG	1 cut(s)	552
EcoO109I	RGGNCCY	2 cut(s)	1645, 1817
EcoO65I	GGTNACC	1 cut(s)	2449
EcoRI	GAATTC	1 cut(s)	2869
EcoRII	CCWGG	5 cut(s)	484, 1164, 1658, 1716, 2794
EcoT14I	CCWWGG	1 cut(s)	439
EcoT38I	GRGCYC	4 cut(s)	1093, 1457, 2514, 3159
ErhI	CCWWGG	1 cut(s)	439
FaqI	GGGAC	4 cut(s)	286, 1444, 2392, 2441
FauI	CCCGC	1 cut(s)	1656
FblI	GTMKAC	1 cut(s)	1506
Fnu4HI	GCNGC	5 cut(s)	351, 514, 618, 2041, 2583
FriOI	GRGCYC	4 cut(s)	1093, 1457, 2514, 3159
Fsp4HI	GCNGC	5 cut(s)	351, 514, 618, 2041, 2583
FspBI	CTAG	6 cut(s)	1554, 1988, 2021, 2624, 3152, 3178
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	4 cut(s)	101, 128, 720, 1802
GluI	GCNGC	5 cut(s)	351, 514, 618, 2041, 2583
GsuI	CTGGAG	5 cut(s)	330, 353, 1506, 1739, 2903
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	6 cut(s)	657, 683, 785, 1218, 1418, 2301
HapII	CCGG	5 cut(s)	666, 894, 1087, 1100, 2681
HhaI	GCGC	4 cut(s)	102, 129, 721, 1803
Hin6I	GCGC	4 cut(s)	100, 127, 719, 1801
HinP1I	GCGC	4 cut(s)	100, 127, 719, 1801
HincII	GTYRAC	1 cut(s)	2080
HindII	GTYRAC	1 cut(s)	2080
HindIII	AAGCTT	3 cut(s)	1578, 2058, 2739
HpaII	CCGG	5 cut(s)	666, 894, 1087, 1100, 2681
Hpy166II	GTNNAC	4 cut(s)	25, 1507, 2066, 2080
Hpy188III	TCNNGA	8 cut(s)	147, 309, 1410, 1574, 1638, 1945, 2132, 3152
Hpy8I	GTNNAC	4 cut(s)	25, 1507, 2066, 2080
HpyCH4III	ACNGT	6 cut(s)	55, 579, 889, 946, 1450, 2837
HpyCH4IV	ACGT	2 cut(s)	1025, 2895
HpyF10VI	GCNNNNNNNGC	6 cut(s)	359, 383, 689, 2582, 2942, 2999
HpyF3I	CTNAG	3 cut(s)	45, 1974, 2095
HpySE526I	ACGT	2 cut(s)	1025, 2895
HspAI	GCGC	4 cut(s)	100, 127, 719, 1801
Kzo9I	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
LmnI	GCTCC	6 cut(s)	550, 576, 2274, 2344, 2647, 3162
Lsp1109I	GCAGC	4 cut(s)	337, 604, 2027, 2594
LweI	GCATC	5 cut(s)	238, 349, 1602, 2326, 2808
MaeI	CTAG	6 cut(s)	1554, 1988, 2021, 2624, 3152, 3178
MaeII	ACGT	2 cut(s)	1025, 2895
MaeIII	GTNAC	8 cut(s)	394, 857, 1021, 1369, 1444, 1549, 2449, 2614
MalI	GATC	6 cut(s)	326, 433, 820, 883, 1145, 1304
MboI	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
MfeI	CAATTG	3 cut(s)	2577, 2591, 3060
MflI	RGATCY	4 cut(s)	431, 818, 881, 1143
MhlI	GDGCHC	8 cut(s)	27, 529, 1093, 1457, 1739, 2200, 2514, 3159
MlyI	GAGTC	6 cut(s)	50, 422, 2085, 2331, 2611, 2828
MmeI	TCCRAC	5 cut(s)	1280, 2299, 2305, 2366, 2678
MroXI	GAANNNNTTC	2 cut(s)	971, 2184
MslI	CAYNNNNRTG	6 cut(s)	791, 1572, 1854, 2372, 2612, 3107
MspCI	CTTAAG	1 cut(s)	1229
MspI	CCGG	5 cut(s)	666, 894, 1087, 1100, 2681
MspR9I	CCNGG	7 cut(s)	486, 894, 1088, 1166, 1660, 1718, 2796
MunI	CAATTG	3 cut(s)	2577, 2591, 3060
Mva1269I	GAATGC	2 cut(s)	1686, 3114
MvaI	CCWGG	5 cut(s)	486, 1166, 1660, 1718, 2796
MwoI	GCNNNNNNNGC	6 cut(s)	359, 383, 689, 2582, 2942, 2999
NciI	CCSGG	2 cut(s)	894, 1088
NdeII	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
NmuCI	GTSAC	6 cut(s)	394, 857, 1444, 1549, 2449, 2614
NsbI	TGCGCA	1 cut(s)	128
NspI	RCATGY	5 cut(s)	377, 843, 1018, 1571, 1930
NspV	TTCGAA	1 cut(s)	2188
PaeI	GCATGC	3 cut(s)	377, 1018, 1930
PaeR7I	CTCGAG	3 cut(s)	38, 1425, 1636
PaqCI	CACCTGC	1 cut(s)	2950
PciI	ACATGT	2 cut(s)	839, 1567
PctI	GAATGC	2 cut(s)	1686, 3114
PdmI	GAANNNNTTC	2 cut(s)	971, 2184
PfeI	GAWTC	6 cut(s)	115, 480, 1593, 2696, 3099, 3137
PflFI	GACNNNGTC	1 cut(s)	1547
PfoI	TCCNGGA	1 cut(s)	1716
PinAI	ACCGGT	2 cut(s)	665, 2680
PkrI	GCNGC	5 cut(s)	352, 515, 619, 2042, 2584
PleI	GAGTC	6 cut(s)	49, 421, 2084, 2330, 2611, 2827
PpsI	GAGTC	6 cut(s)	49, 421, 2084, 2330, 2611, 2827
PpuMI	RGGWCCY	2 cut(s)	1645, 1817
PscI	ACATGT	2 cut(s)	839, 1567
Psp124BI	GAGCTC	2 cut(s)	2514, 3159
Psp5II	RGGWCCY	2 cut(s)	1645, 1817
Psp6I	CCWGG	5 cut(s)	484, 1164, 1658, 1716, 2794
PspEI	GGTNACC	1 cut(s)	2449
PspGI	CCWGG	5 cut(s)	484, 1164, 1658, 1716, 2794
PspPI	GGNCC	6 cut(s)	656, 681, 783, 1645, 1817, 2783
PspPPI	RGGWCCY	2 cut(s)	1645, 1817
PspXI	VCTCGAGB	2 cut(s)	38, 1425
PstI	CTGCAG	4 cut(s)	622, 781, 2045, 2961
PsuI	RGATCY	4 cut(s)	431, 818, 881, 1143
PsyI	GACNNNGTC	1 cut(s)	1547
RsaI	GTAC	5 cut(s)	76, 346, 943, 1761, 2498
RsaNI	GTAC	5 cut(s)	75, 345, 942, 1760, 2497
RseI	CAYNNNNRTG	6 cut(s)	791, 1572, 1854, 2372, 2612, 3107
SacI	GAGCTC	2 cut(s)	2514, 3159
SatI	GCNGC	5 cut(s)	351, 514, 618, 2041, 2583
Sau3AI	GATC	6 cut(s)	324, 431, 818, 881, 1143, 1302
Sau96I	GGNCC	6 cut(s)	656, 681, 783, 1645, 1817, 2783
SbfI	CCTGCAGG	1 cut(s)	2961
ScaI	AGTACT	3 cut(s)	76, 346, 1761
SchI	GAGTC	6 cut(s)	50, 422, 2085, 2331, 2611, 2828
ScrFI	CCNGG	7 cut(s)	486, 894, 1088, 1166, 1660, 1718, 2796
SdaI	CCTGCAGG	1 cut(s)	2961
SduI	GDGCHC	8 cut(s)	27, 529, 1093, 1457, 1739, 2200, 2514, 3159
SfaNI	GCATC	5 cut(s)	238, 349, 1602, 2326, 2808
SfcI	CTRYAG	7 cut(s)	276, 575, 618, 777, 885, 2041, 2957
Sfr274I	CTCGAG	3 cut(s)	38, 1425, 1636
SfuI	TTCGAA	1 cut(s)	2188
SinI	GGWCC	3 cut(s)	1645, 1817, 2783
SlaI	CTCGAG	3 cut(s)	38, 1425, 1636
SmiMI	CAYNNNNRTG	6 cut(s)	791, 1572, 1854, 2372, 2612, 3107
SmlI	CTYRAG	6 cut(s)	38, 1229, 1425, 1636, 1943, 2507
SmoI	CTYRAG	6 cut(s)	38, 1229, 1425, 1636, 1943, 2507
SphI	GCATGC	3 cut(s)	377, 1018, 1930
Sse8387I	CCTGCAGG	1 cut(s)	2961
SsiI	CCGC	4 cut(s)	514, 1649, 2547, 3141
SspI	AATATT	3 cut(s)	382, 1833, 2145
SspMI	CTAG	6 cut(s)	1554, 1988, 2021, 2624, 3152, 3178
SstI	GAGCTC	2 cut(s)	2514, 3159
StyD4I	CCNGG	7 cut(s)	484, 892, 1086, 1164, 1658, 1716, 2794
StyI	CCWWGG	1 cut(s)	439
TaaI	ACNGT	6 cut(s)	55, 579, 889, 946, 1450, 2837
TaiI	ACGT	2 cut(s)	1028, 2898
TaqI	TCGA	6 cut(s)	33, 39, 629, 1426, 1637, 2188
TatI	WGTACW	4 cut(s)	74, 344, 1759, 2496
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	6 cut(s)	115, 480, 1593, 2696, 3099, 3137
TseFI	GTSAC	6 cut(s)	394, 857, 1444, 1549, 2449, 2614
TseI	GCWGC	4 cut(s)	350, 617, 2040, 2582
Tsp45I	GTSAC	6 cut(s)	394, 857, 1444, 1549, 2449, 2614
TspGWI	ACGGA	4 cut(s)	413, 424, 1172, 2445
Tth111I	GACNNNGTC	1 cut(s)	1547
Vha464I	CTTAAG	1 cut(s)	1229
VneI	GTGCAC	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	1645, 1817, 2783
XagI	CCTNNNNNAGG	1 cut(s)	552
XapI	RAATTY	2 cut(s)	1264, 2869
XbaI	TCTAGA	1 cut(s)	3151
XceI	RCATGY	5 cut(s)	377, 843, 1018, 1571, 1930
XcmI	CCANNNNNNNNNTGG	3 cut(s)	93, 666, 793
XhoI	CTCGAG	3 cut(s)	38, 1425, 1636
XmiI	GTMKAC	1 cut(s)	1506
XmnI	GAANNNNTTC	2 cut(s)	971, 2184
XspI	CTAG	6 cut(s)	1554, 1988, 2021, 2624, 3152, 3178
ZrmI	AGTACT	3 cut(s)	76, 346, 1761

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.