Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Forward (+)

17635970 .. 17648380

Gene Structure 12411 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G014710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3048 bp

ATGGGTAGTTCTGGTGAAGTCGACCTTGAGAATCAACAAACGGTTCCCCGTGTGGCGACTGATCGTGGAGGCGGCTGGCTAACTAGTCTCTTGAATGTAATTCATTCATTTTGCGAGTTTCTGATCATAAAACCTTCTTCTGCTGATGATGAAAGTGAGGAACTGGAACTTACCAGAACTACACACCTTGCTTCTGCATCACCTCACGTTTCTAAAGCAGTATCAAGTTTGAGCATGGAGGATGATGGTACCATCACTAGTACTGCTACCGTTTCTGACCAAGTGAATCTGAACATTGAGAATGATATTACTACCAGGATTGCTAATGAGGCTAAGATCCAGCATGCAAATATTTCCAAGATAGTAAAGGAGAAGGACTTTGCTACCTTACAGAAGTTTGGAGGCATCAAAGGAATTGCAGAGGCACTCAGTACAGATTTACACAGTGGAATCCCAGGTGATGAACAAGATCTTCATGATCGATGCAGTGCAGTAGTCTCAACAACACAGGCTCCAACTCCAAGCTTCTTTAAACTTCTACGACAATCTTGTTTCGATTGGACCGTTTTCCTTCTCTTCGTGTGTGTCATCCTGTCAACTGTATTTGGTATCCAGCAGGAAGGCCCAAGTAATGGTTGGCTTGAAGGAGCTGTCGGAATGTTTGCGATCATCATACTTGTGGTTGTACCTACAATGCGCAAGTATTTCTCCATGCCGCATCCCAGGAATACTAGTCAAATGAAAACTAAGGTCCGCAGAGGAGGAAACCTGCTTCATATCTCCCCATCGGATGTTGTGCCAGGTGACATAGTATGCTTGGAATTGGGATCTCTAGTTCCTGCTGATGGTTTGTTCGTTTCGACTGGTGAATCCTTAGTGTTGGAAGATGGTATGAAATTTCCAACCGTCGATGACAGCAATCCTTTTCTGGTTTATGGTGCAAGGGTGGAAAATGGTAATGGTCGCATGTTGGTTACTTGTGTGGGGATGAAGACAACATTAGGTGAGCTGATGGGCCAAGTTAGATGTACTCCTAGACAGGACCAATTACCAGCTCAACTTAATAACTTGAGCACAAGGTTGCAGACTGTTGGGCTCTTGATCACAATTTTCATGACTCTAGTGCTTATCATTCGTTCCGTGGTTCTAAAGGTTAATGATTACCCTGGCCTCCAAGCTGATCAGTTCAAGGCTAAAACAACTGCAAGCGAGGAGCTAATCAATGTCATTAGCAGGTTTTTCATGAAATCAAGTGGGCAGATTAGTGTGTTGGCGACGTATCTACCTTTTTTGATTGTAGGCTTAGCGGAAGGAGTACCTTTTTCAGTTGCACTTGCCATCACTTACTGGACTAAGACCACGCTGTCTGGGAAAGCTATTTCTCAAAGAAACTTAGCTTGTTTCACCATGGGATCTGTGTCAACTATTTGCATTGGTGATGGGCTAACTTTGAAGCCTGTTCTTGAAGTCGACCTGAGCTGTGATGGGGATCAAATCACCGATACAGAGAGTGTTGCTGGTATTGACAAACACGTTCGTGAAGCTTTGTACAAAGGAATTAGCACACCACTTTTGATGCCTTCAAGCCCTTGTAGCTCAACAGAACACCGGGTCTTGCTACCGTGGGCCAAATCTAATTTGGGTATGGACAATGAGAATTTATTGCAAAATTGCACCATTGTGGGGAGCGAAAAGTTGAGCACCGAAGAGGAGGCTAGTAGAGTTCTGATGAAGGACAGTGAAACTGGAGATATGTGCTTTTATTGGAATGGACCTGCAACAACAATATTGCCCATGTGTTCAGAATACTATGACAGCAAGGGGACAACAAAGCTCATGGATGAACAGAAGAAACGTGATTTTAAAGAAATTATGGGGAACATGCAGTCCAAACATCTCAAGACCATTGCATTTGCGTACAAGAAGATTGATACTCTAATGCCTGAAGAAGGCAACAACTTAATATTGATAGGACTGCTAGGTGTGAAGTGTTGCACTGAGACAATGGAAGCACCGGAAGTTCTACAAAAAGCGGGAGTGGACATCATCCAGTTCGCAAAAGATAATGAGTCAATACTGTCGGAAGGTGATAGTCCTGTCTATGGAATGGGAAGACCTGCTGACAAGCTCCATACACTGCAACGTCTGAAGGAAGAGGGCCATGTTGTAGCAATGGTTGGGGCTAGAACAAATGAGACTCCAGCTCTAAAAGAAGCCGATGTGGGGATTGTAATAGGGACTCGCATTAGTGAAATGGCAAGAGAGGGTTCTGATCTCATCATCCCCGATTGCAGTCTCAGTTTCTTGGTCAACATTATTCGGATCGGAAGATGCATTCACTACAACATTCAGAAGTACATCCAAGTTGAGCTCACCATGAATATATCATTGCTTGTGATAATCTCAATCACTACAATGTCCTTGGGACATTGCACAGTTGGGGCAATCGAAGTAGTGTGGGCAAATATGGTTGTGACACTATGTGGGCTTGCGCTACTGGTTGAGCCGCCAACAGAGGAGCAGATGGAAAAGCCGCCGGTAAAACAAACTGAATCTCTCATTACCAAGGCAATGTGGAGAAACATATTACTTCAAGCTTTATATCAGGCTGCCATCTTGGTCACCTTTCAGTTCAAATATAAAGCTCTCCCAGGCATCAACGAGAAGATTATGGAGTCCATAGTTTTCAGCAGTTATGTTCTTTGTCAGGTATTTAATCAAGTCAGCTCAAGGGAGCTAGAGAAGAAAAATGTGTTCAGAGATATACGTCGAACTCGATGGTTATGGGTGGCTGTGGGAGTTAGCATCACGATGCAGGTGGCTTTTGTTGAGATTGCACACAAGGTTGCTGGCAATGCAAGGTTGAATTGGGCACAATGGGGTGTCTGTCTTTTAATAGCGATGGTTTCCTGGCCAATGGATTTGGCTGGGAAATGTGTATGGGGTGTCATCATGAAGATTAGAGTACTTGGATCTGATATTGAATCCATCAGTATGAGGTCCTCTGCTGTCTCAGAATCAGCTTCTAATCGAGAGCTCCTAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1015

Amino Acids

111.35

Weight (kDa)

5.54

Isoelectric Point (pI)

38.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	245 - 341	1.2e-09	P-type ATPase actuator domain
Cation_ATPase	PF13246	547 - 662	1.5e-07	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	815 - 978	9.7e-36	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2806
AasI	GACNNNNNNGTC	1 cut(s)	1363
Acc16I	TGCGCA	1 cut(s)	698
Acc36I	ACCTGC	5 cut(s)	777, 1224, 1783, 2125, 2806
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccB7I	CCANNNNNTGG	1 cut(s)	632
AccI	GTMKAC	2 cut(s)	21, 1470
AciI	CCGC	7 cut(s)	72, 716, 754, 1307, 2033, 2507, 2534
AclWI	GGATC	6 cut(s)	331, 835, 1420, 1497, 2330, 2980
AcoI	YGGCCR	1 cut(s)	2912
AcsI	RAATTY	2 cut(s)	896, 1657
AcuI	CTGAAG	2 cut(s)	1965, 2168
AdeI	CACNNNGTG	1 cut(s)	2483
AfiI	CCNNNNNNNGG	6 cut(s)	632, 845, 1683, 1949, 2102, 2223
AflIII	ACRYGT	1 cut(s)	1531
AhlI	ACTAGT	3 cut(s)	83, 257, 731
AjnI	CCWGG	7 cut(s)	314, 454, 722, 799, 1165, 2650, 2909
AleI	CACNNNNGTG	2 cut(s)	1536, 1679
AloI	GAACNNNNNNTCC	4 cut(s)	819, 851, 1871, 1903
Alw21I	GWGCWC	4 cut(s)	1076, 1703, 2373, 3039
Alw26I	GTCTC	6 cut(s)	92, 502, 1994, 2189, 2300, 3016
AlwI	GGATC	6 cut(s)	331, 835, 1420, 1497, 2330, 2980
AoxI	GGCC	6 cut(s)	622, 1015, 1168, 1626, 2158, 2912
ApeKI	GCWGC	1 cut(s)	2609
ApoI	RAATTY	2 cut(s)	896, 1657
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	2 cut(s)	699, 2494
AspS9I	GGNCC	9 cut(s)	561, 623, 751, 1015, 1042, 1626, 1772, 2158, 3000
AsuC2I	CCSGG	1 cut(s)	1610
AvaII	GGWCC	5 cut(s)	561, 751, 1042, 1772, 3000
BaeGI	GKGCMC	1 cut(s)	2875
BalI	TGGCCA	1 cut(s)	2914
BanI	GGYRCC	1 cut(s)	248
BanII	GRGCYC	3 cut(s)	1098, 2373, 3039
BbsI	GAAGAC	2 cut(s)	998, 2119
Bbv12I	GWGCWC	4 cut(s)	1076, 1703, 2373, 3039
BbvI	GCAGC	1 cut(s)	2596
BciT130I	CCWGG	7 cut(s)	316, 456, 724, 801, 1167, 2652, 2911
BciVI	GTATCC	1 cut(s)	620
BclI	TGATCA	3 cut(s)	123, 1101, 1180
BcnI	CCSGG	1 cut(s)	1610
BcoDI	GTCTC	6 cut(s)	92, 502, 1994, 2189, 2300, 3016
BcuI	ACTAGT	3 cut(s)	83, 257, 731
BfuAI	ACCTGC	5 cut(s)	777, 1224, 1783, 2125, 2806
BfuI	GTATCC	1 cut(s)	620
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	5 cut(s)	73, 716, 2507, 2534, 2610
BlpI	GCTNAGC	1 cut(s)	1303
BlsI	GCNGC	5 cut(s)	74, 717, 2508, 2535, 2611
BmcAI	AGTACT	2 cut(s)	262, 2967
Bme1390I	CCNGG	8 cut(s)	316, 456, 724, 801, 1167, 1610, 2652, 2911
Bme18I	GGWCC	5 cut(s)	561, 751, 1042, 1772, 3000
BmgT120I	GGNCC	9 cut(s)	561, 623, 751, 1015, 1042, 1626, 1772, 2158, 3000
BmiI	GGNNCC	3 cut(s)	45, 250, 513
BmrFI	CCNGG	8 cut(s)	316, 456, 724, 801, 1167, 1610, 2652, 2911
BmsI	GCATC	9 cut(s)	206, 414, 473, 727, 1566, 2321, 2664, 2802, 2814
BpiI	GAAGAC	2 cut(s)	998, 2119
BpmI	CTGGAG	2 cut(s)	1767, 2184
Bpu10I	CCTNAGC	1 cut(s)	1475
Bpu1102I	GCTNAGC	1 cut(s)	1303
BpuEI	CTTGAG	4 cut(s)	47, 1090, 1883, 2713
BpuMI	CCSGG	1 cut(s)	1610
Bsa29I	ATCGAT	1 cut(s)	481
BsaBI	GATNNNNATC	1 cut(s)	1488
BsaJI	CCNNGG	9 cut(s)	454, 722, 1140, 1165, 1407, 1622, 2421, 2565, 2650
BsaWI	WCCGGW	1 cut(s)	2014
BsaXI	ACNNNNNCTCC	2 cut(s)	496, 526
Bsc4I	CCNNNNNNNGG	6 cut(s)	632, 845, 1683, 1949, 2102, 2223
Bse118I	RCCGGY	1 cut(s)	2536
Bse1I	ACTGG	6 cut(s)	168, 868, 1352, 1750, 2050, 2502
Bse3DI	GCAATG	6 cut(s)	1905, 2178, 2387, 2428, 2577, 2860
Bse8I	GATNNNNATC	1 cut(s)	1488
BseBI	CCWGG	7 cut(s)	316, 456, 724, 801, 1167, 2652, 2911
BseCI	ATCGAT	1 cut(s)	481
BseDI	CCNNGG	9 cut(s)	454, 722, 1140, 1165, 1407, 1622, 2421, 2565, 2650
BseGI	GGATG	9 cut(s)	247, 588, 718, 796, 993, 1846, 2046, 2280, 2358
BseJI	GATNNNNATC	1 cut(s)	1488
BseLI	CCNNNNNNNGG	6 cut(s)	632, 845, 1683, 1949, 2102, 2223
BseMI	GCAATG	6 cut(s)	1905, 2178, 2387, 2428, 2577, 2860
BseMII	CTCAG	5 cut(s)	442, 1466, 1989, 2311, 3027
BseNI	ACTGG	6 cut(s)	168, 868, 1352, 1750, 2050, 2502
BseRI	GAGGAG	4 cut(s)	774, 1226, 1724, 2531
BseSI	GKGCMC	1 cut(s)	2875
BseXI	GCAGC	1 cut(s)	2596
BseYI	CCCAGC	1 cut(s)	2927
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	6 cut(s)	624, 1017, 1170, 1628, 2160, 2914
BshNI	GGYRCC	1 cut(s)	248
BshVI	ATCGAT	1 cut(s)	481
BsiHKAI	GWGCWC	4 cut(s)	1076, 1703, 2373, 3039
BsiSI	CCGG	3 cut(s)	1609, 2015, 2537
BslFI	GGGAC	3 cut(s)	1837, 2251, 2439
BslI	CCNNNNNNNGG	6 cut(s)	632, 845, 1683, 1949, 2102, 2223
BsmAI	GTCTC	6 cut(s)	92, 502, 1994, 2189, 2300, 3016
BsmFI	GGGAC	3 cut(s)	1837, 2251, 2439
BsmI	GAATGC	1 cut(s)	2334
BsnI	GGCC	6 cut(s)	624, 1017, 1170, 1628, 2160, 2914
Bsp1286I	GDGCHC	6 cut(s)	1076, 1098, 1703, 2373, 2875, 3039
Bsp1407I	TGTACA	1 cut(s)	1548
Bsp1720I	GCTNAGC	1 cut(s)	1303
Bsp19I	CCATGG	1 cut(s)	1407
BspACI	CCGC	7 cut(s)	72, 716, 754, 1307, 2033, 2507, 2534
BspANI	GGCC	6 cut(s)	624, 1017, 1170, 1628, 2160, 2914
BspCNI	CTCAG	5 cut(s)	441, 1467, 1990, 2310, 3026
BspDI	ATCGAT	1 cut(s)	481
BspHI	TCATGA	4 cut(s)	475, 1113, 1242, 2952
BspLI	GGNNCC	3 cut(s)	45, 250, 513
BspMI	ACCTGC	5 cut(s)	777, 1224, 1783, 2125, 2806
BspPI	GGATC	6 cut(s)	331, 835, 1420, 1497, 2330, 2980
BspT107I	GGYRCC	1 cut(s)	248
BsrDI	GCAATG	6 cut(s)	1905, 2178, 2387, 2428, 2577, 2860
BsrFI	RCCGGY	1 cut(s)	2536
BsrGI	TGTACA	1 cut(s)	1548
BsrI	ACTGG	6 cut(s)	168, 868, 1352, 1750, 2050, 2502
BssAI	RCCGGY	1 cut(s)	2536
BssECI	CCNNGG	9 cut(s)	454, 722, 1140, 1165, 1407, 1622, 2421, 2565, 2650
BssT1I	CCWWGG	3 cut(s)	1407, 2421, 2565
Bst2UI	CCWGG	7 cut(s)	316, 456, 724, 801, 1167, 2652, 2911
Bst6I	CTCTTC	3 cut(s)	581, 1701, 2148
BstAUI	TGTACA	1 cut(s)	1548
BstC8I	GCNNGC	5 cut(s)	77, 345, 1207, 2490, 2851
BstDSI	CCRYGG	3 cut(s)	1140, 1407, 1622
BstEII	GGTNACC	1 cut(s)	2620
BstENI	CCTNNNNNAGG	1 cut(s)	1947
BstF5I	GGATG	9 cut(s)	247, 588, 718, 796, 993, 1846, 2046, 2280, 2358
BstHHI	GCGC	2 cut(s)	699, 2494
BstMAI	GTCTC	6 cut(s)	92, 502, 1994, 2189, 2300, 3016
BstMWI	GCNNNNNNNGC	3 cut(s)	329, 1593, 2855
BstNI	CCWGG	7 cut(s)	316, 456, 724, 801, 1167, 2652, 2911
BstNSI	RCATGY	3 cut(s)	347, 970, 1885
BstPI	GGTNACC	1 cut(s)	2620
BstSCI	CCNGG	8 cut(s)	314, 454, 722, 799, 1165, 1608, 2650, 2909
BstSLI	GKGCMC	1 cut(s)	2875
BstV1I	GCAGC	1 cut(s)	2596
BstV2I	GAAGAC	2 cut(s)	998, 2119
BstX2I	RGATCY	5 cut(s)	336, 469, 827, 1412, 2972
BstYI	RGATCY	5 cut(s)	336, 469, 827, 1412, 2972
Bsu15I	ATCGAT	1 cut(s)	481
BsuI	GTATCC	1 cut(s)	620
BsuRI	GGCC	6 cut(s)	624, 1017, 1170, 1628, 2160, 2914
BsuTUI	ATCGAT	1 cut(s)	481
BtgI	CCRYGG	3 cut(s)	1140, 1407, 1622
BtgZI	GCGATG	1 cut(s)	2915
BtsCI	GGATG	9 cut(s)	247, 588, 718, 796, 993, 1846, 2046, 2280, 2358
BtsI	GCAGTG	2 cut(s)	493, 2135
BtsIMutI	CAGTG	5 cut(s)	451, 493, 1744, 1995, 2135
BveI	ACCTGC	5 cut(s)	777, 1224, 1783, 2125, 2806
Cac8I	GCNNGC	5 cut(s)	77, 345, 1207, 2490, 2851
CciI	TCATGA	4 cut(s)	475, 1113, 1242, 2952
CfoI	GCGC	2 cut(s)	699, 2494
Cfr10I	RCCGGY	1 cut(s)	2536
Cfr13I	GGNCC	9 cut(s)	561, 623, 751, 1015, 1042, 1626, 1772, 2158, 3000
ClaI	ATCGAT	1 cut(s)	481
DraI	TTTAAA	2 cut(s)	532, 1864
DraIII	CACNNNGTG	1 cut(s)	2483
DrdI	GACNNNNNNGTC	1 cut(s)	1363
DseDI	GACNNNNNNGTC	1 cut(s)	1363
EaeI	YGGCCR	1 cut(s)	2912
Eam1104I	CTCTTC	3 cut(s)	581, 1701, 2148
EarI	CTCTTC	3 cut(s)	581, 1701, 2148
Ecl136II	GAGCTC	2 cut(s)	2371, 3037
Eco130I	CCWWGG	3 cut(s)	1407, 2421, 2565
Eco24I	GRGCYC	3 cut(s)	1098, 2373, 3039
Eco47I	GGWCC	5 cut(s)	561, 751, 1042, 1772, 3000
Eco53kI	GAGCTC	2 cut(s)	2371, 3037
Eco57I	CTGAAG	2 cut(s)	1965, 2168
Eco91I	GGTNACC	1 cut(s)	2620
EcoICRI	GAGCTC	2 cut(s)	2371, 3037
EcoNI	CCTNNNNNAGG	1 cut(s)	1947
EcoO109I	RGGNCCY	1 cut(s)	3000
EcoO65I	GGTNACC	1 cut(s)	2620
EcoRII	CCWGG	7 cut(s)	314, 454, 722, 799, 1165, 2650, 2909
EcoT14I	CCWWGG	3 cut(s)	1407, 2421, 2565
EcoT22I	ATGCAT	1 cut(s)	2336
EcoT38I	GRGCYC	3 cut(s)	1098, 2373, 3039
ErhI	CCWWGG	3 cut(s)	1407, 2421, 2565
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FaqI	GGGAC	3 cut(s)	1837, 2251, 2439
FauI	CCCGC	1 cut(s)	2026
FbaI	TGATCA	3 cut(s)	123, 1101, 1180
FblI	GTMKAC	2 cut(s)	21, 1470
Fnu4HI	GCNGC	5 cut(s)	73, 716, 2507, 2534, 2610
FokI	GGATG	9 cut(s)	254, 575, 705, 803, 1000, 1853, 2033, 2267, 2345
FriOI	GRGCYC	3 cut(s)	1098, 2373, 3039
Fsp4HI	GCNGC	5 cut(s)	73, 716, 2507, 2534, 2610
FspI	TGCGCA	1 cut(s)	698
GlaI	GCGC	2 cut(s)	698, 2493
GluI	GCNGC	5 cut(s)	73, 716, 2507, 2534, 2610
GsaI	CCCAGC	1 cut(s)	2931
GsuI	CTGGAG	2 cut(s)	1767, 2184
HaeIII	GGCC	6 cut(s)	624, 1017, 1170, 1628, 2160, 2914
HapII	CCGG	3 cut(s)	1609, 2015, 2537
HhaI	GCGC	2 cut(s)	699, 2494
Hin6I	GCGC	2 cut(s)	697, 2492
HinP1I	GCGC	2 cut(s)	697, 2492
HincII	GTYRAC	5 cut(s)	22, 597, 1422, 1471, 2311
HindII	GTYRAC	5 cut(s)	22, 597, 1422, 1471, 2311
HindIII	AAGCTT	3 cut(s)	523, 1542, 2595
HpaII	CCGG	3 cut(s)	1609, 2015, 2537
Hpy166II	GTNNAC	6 cut(s)	22, 597, 1422, 1471, 2041, 2311
Hpy8I	GTNNAC	6 cut(s)	22, 597, 1422, 1471, 2041, 2311
Hpy99I	CGWCG	3 cut(s)	911, 1279, 2772
HpyCH4IV	ACGT	6 cut(s)	207, 1277, 1533, 1855, 2143, 2767
HpyF10VI	GCNNNNNNNGC	3 cut(s)	329, 1593, 2855
HpySE526I	ACGT	6 cut(s)	207, 1277, 1533, 1855, 2143, 2767
HspAI	GCGC	2 cut(s)	697, 2492
KpnI	GGTACC	1 cut(s)	252
Ksp22I	TGATCA	3 cut(s)	123, 1101, 1180
LmnI	GCTCC	8 cut(s)	517, 647, 1213, 1686, 2133, 2518, 2734, 3042
Lsp1109I	GCAGC	1 cut(s)	2596
LweI	GCATC	9 cut(s)	206, 414, 473, 727, 1566, 2321, 2664, 2802, 2814
MaeII	ACGT	6 cut(s)	207, 1277, 1533, 1855, 2143, 2767
MaeIII	GTNAC	4 cut(s)	803, 973, 2473, 2620
MflI	RGATCY	5 cut(s)	336, 469, 827, 1412, 2972
MhlI	GDGCHC	6 cut(s)	1076, 1098, 1703, 2373, 2875, 3039
MlsI	TGGCCA	1 cut(s)	2914
MluNI	TGGCCA	1 cut(s)	2914
MlyI	GAGTC	5 cut(s)	1111, 2078, 2191, 2233, 2684
MmeI	TCCRAC	5 cut(s)	539, 634, 861, 926, 2061
Mox20I	TGGCCA	1 cut(s)	2914
Mph1103I	ATGCAT	1 cut(s)	2336
MscI	TGGCCA	1 cut(s)	2914
MseI	TTAA	7 cut(s)	531, 1062, 1155, 1863, 1961, 2715, 2894
MslI	CAYNNNNRTG	6 cut(s)	677, 1536, 1679, 2414, 2810, 2993
Msp20I	TGGCCA	1 cut(s)	2914
MspI	CCGG	3 cut(s)	1609, 2015, 2537
MspR9I	CCNGG	8 cut(s)	316, 456, 724, 801, 1167, 1610, 2652, 2911
Mva1269I	GAATGC	1 cut(s)	2334
MvaI	CCWGG	7 cut(s)	316, 456, 724, 801, 1167, 2652, 2911
MwoI	GCNNNNNNNGC	3 cut(s)	329, 1593, 2855
NciI	CCSGG	1 cut(s)	1610
NcoI	CCATGG	1 cut(s)	1407
NlaIV	GGNNCC	3 cut(s)	45, 250, 513
NmuCI	GTSAC	3 cut(s)	803, 2473, 2620
NsbI	TGCGCA	1 cut(s)	698
NsiI	ATGCAT	1 cut(s)	2336
NspI	RCATGY	3 cut(s)	347, 970, 1885
OliI	CACNNNNGTG	2 cut(s)	1536, 1679
PaeI	GCATGC	1 cut(s)	347
PagI	TCATGA	4 cut(s)	475, 1113, 1242, 2952
PaqCI	CACCTGC	1 cut(s)	2806
PcsI	WCGNNNNNNNCGW	2 cut(s)	561, 2773
PctI	GAATGC	1 cut(s)	2334
PfeI	GAWTC	7 cut(s)	31, 286, 450, 869, 2552, 2984, 3017
PflMI	CCANNNNNTGG	1 cut(s)	632
PkrI	GCNGC	5 cut(s)	74, 717, 2508, 2535, 2611
PleI	GAGTC	5 cut(s)	1111, 2077, 2191, 2233, 2683
PpsI	GAGTC	5 cut(s)	1111, 2077, 2191, 2233, 2683
PpuMI	RGGWCCY	1 cut(s)	3000
Psp124BI	GAGCTC	2 cut(s)	2373, 3039
Psp5II	RGGWCCY	1 cut(s)	3000
Psp6I	CCWGG	7 cut(s)	314, 454, 722, 799, 1165, 2650, 2909
PspEI	GGTNACC	1 cut(s)	2620
PspFI	CCCAGC	1 cut(s)	2927
PspGI	CCWGG	7 cut(s)	314, 454, 722, 799, 1165, 2650, 2909
PspN4I	GGNNCC	3 cut(s)	45, 250, 513
PspPI	GGNCC	9 cut(s)	561, 623, 751, 1015, 1042, 1626, 1772, 2158, 3000
PspPPI	RGGWCCY	1 cut(s)	3000
PsuI	RGATCY	5 cut(s)	336, 469, 827, 1412, 2972
RseI	CAYNNNNRTG	6 cut(s)	677, 1536, 1679, 2414, 2810, 2993
SacI	GAGCTC	2 cut(s)	2373, 3039
SalI	GTCGAC	2 cut(s)	20, 1469
SaqAI	TTAA	7 cut(s)	531, 1062, 1155, 1863, 1961, 2715, 2894
SatI	GCNGC	5 cut(s)	73, 716, 2507, 2534, 2610
Sau96I	GGNCC	9 cut(s)	561, 623, 751, 1015, 1042, 1626, 1772, 2158, 3000
ScaI	AGTACT	2 cut(s)	262, 2967
SchI	GAGTC	5 cut(s)	1111, 2078, 2191, 2233, 2684
ScrFI	CCNGG	8 cut(s)	316, 456, 724, 801, 1167, 1610, 2652, 2911
SduI	GDGCHC	6 cut(s)	1076, 1098, 1703, 2373, 2875, 3039
SfaNI	GCATC	9 cut(s)	206, 414, 473, 727, 1566, 2321, 2664, 2802, 2814
SinI	GGWCC	5 cut(s)	561, 751, 1042, 1772, 3000
SmiMI	CAYNNNNRTG	6 cut(s)	677, 1536, 1679, 2414, 2810, 2993
SmlI	CTYRAG	4 cut(s)	26, 1069, 1898, 2728
SmoI	CTYRAG	4 cut(s)	26, 1069, 1898, 2728
SpeI	ACTAGT	3 cut(s)	83, 257, 731
SphI	GCATGC	1 cut(s)	347
SsiI	CCGC	7 cut(s)	72, 716, 754, 1307, 2033, 2507, 2534
SspI	AATATT	3 cut(s)	352, 1788, 1965
SstI	GAGCTC	2 cut(s)	2373, 3039
StyD4I	CCNGG	8 cut(s)	314, 454, 722, 799, 1165, 1608, 2650, 2909
StyI	CCWWGG	3 cut(s)	1407, 2421, 2565
TaiI	ACGT	6 cut(s)	210, 1280, 1536, 1858, 2146, 2770
TatI	WGTACW	6 cut(s)	260, 431, 1028, 1548, 2355, 2965
TauI	GCSGC	4 cut(s)	75, 718, 2509, 2536
TfiI	GAWTC	7 cut(s)	31, 286, 450, 869, 2552, 2984, 3017
Tru1I	TTAA	7 cut(s)	531, 1062, 1155, 1863, 1961, 2715, 2894
Tru9I	TTAA	7 cut(s)	531, 1062, 1155, 1863, 1961, 2715, 2894
TscAI	CASTG	5 cut(s)	451, 493, 1744, 2002, 2142
TseFI	GTSAC	3 cut(s)	803, 2473, 2620
TseI	GCWGC	1 cut(s)	2609
Tsp45I	GTSAC	3 cut(s)	803, 2473, 2620
TspGWI	ACGGA	1 cut(s)	1129
TspRI	CASTG	5 cut(s)	451, 493, 1744, 2002, 2142
Van91I	CCANNNNNTGG	1 cut(s)	632
VpaK11BI	GGWCC	5 cut(s)	561, 751, 1042, 1772, 3000
XagI	CCTNNNNNAGG	1 cut(s)	1947
XapI	RAATTY	2 cut(s)	896, 1657
XceI	RCATGY	3 cut(s)	347, 970, 1885
XcmI	CCANNNNNNNNNTGG	2 cut(s)	633, 1636
XmiI	GTMKAC	2 cut(s)	21, 1470
ZrmI	AGTACT	2 cut(s)	262, 2967
Zsp2I	ATGCAT	1 cut(s)	2336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.