Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Forward (+)

96147590 .. 96148492

Gene Structure 903 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAGATGGTAAGTGAAATTTCAGTGATGGGAAACTCACTTCCCTCCGACAAGCTTCTCCTGGTTAAGTGTTTGAAGCGAAAAGGGGAAACAGTAGCAGTCATTGGAGTTAAAACGAATGAGGCTCCTGCACTGAAAGAAGCTGATGTTGGACTTACAATGGGAATATGGACCACCAAAATGGCTAAAGCGAGTTCAGACATCATCGTAAGGGTTGCAGATATCAGTTGCCTGGTAAGTATCCTCAGGTATGGAAGATGTGCTTATTACAACATTCAAAAGTACATCCAACTTGAGCTTACTATAGTCGCCGCAGGGCTTTTAGTAACATTTATCATAGCAGCATCTACAGGAAATATGCCCATAACAAGTATCCAATTGTTCTGGGTAAACCTGGTAGTGCCAATGCTGGGCGGCCTGGCTCTATTGACAGAGCTCCCAAGAAAGAAGTTAATGGAGAAATCACAATCCGGACAAACCAAAGCAATTATTACCATGGCCATGTGCAGAAATATAATAATCCAAGCTTCATATCAAGCTGTTACTCTAGTCACCTTCCATTTCAAAGGACAAGCAATCTTGGGTGTCGATGAAAAGGTTCGTAAGACTATCATCTTCAATAGTTTTGTCATTTGCCAGATTTTTAACAAGTTCAGTGCGAGAGAGCTGGTAAAGAAAAATGTTTTTAAGGCGATCCACAAAAACCAATGGTTTTGGGTGGCTTTGGCTGCAATACTAGTGCTACAGCTGAGTTTTATTGAGATTTCACATGTGGTTGCTGGTGATGCAAGGCTGAGCTTGGTGCACTGGGGTTTCTGCCTTCTTATTGGGATTGTTTCGCTAGGGATGGATATAGCTGCAAAGGGCATATATGATTGCATGTCATCTTTCGACGTCGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

300

Amino Acids

33.04

Weight (kDa)

9.41

Isoelectric Point (pI)

30.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cation_ATPase_C	PF00689	120 - 288	2.4e-33	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	897
AccIII	TCCGGA	1 cut(s)	470
AciI	CCGC	2 cut(s)	312, 414
AclWI	GGATC	1 cut(s)	688
AcoI	YGGCCR	1 cut(s)	498
AcsI	RAATTY	1 cut(s)	18
AcyI	GRCGYC	1 cut(s)	894
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	410
AflIII	ACRYGT	1 cut(s)	769
AgsI	TTSAA	4 cut(s)	76, 278, 565, 619
AhlI	ACTAGT	1 cut(s)	736
AjnI	CCWGG	4 cut(s)	60, 231, 393, 417
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
Alw21I	GWGCWC	2 cut(s)	438, 807
Alw44I	GTGCAC	1 cut(s)	803
AlwI	GGATC	1 cut(s)	688
Aor13HI	TCCGGA	1 cut(s)	470
AoxI	GGCC	2 cut(s)	415, 498
ApaLI	GTGCAC	1 cut(s)	803
ApeKI	GCWGC	3 cut(s)	341, 728, 857
ApoI	RAATTY	1 cut(s)	18
Asp700I	GAANNNNTTC	1 cut(s)	597
AspS9I	GGNCC	1 cut(s)	171
AsuHPI	GGTGA	2 cut(s)	544, 794
AvaII	GGWCC	1 cut(s)	171
AxyI	CCTNAGG	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	807
BalI	TGGCCA	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	2 cut(s)	438, 807
BbvI	GCAGC	3 cut(s)	353, 715, 844
BccI	CCATC	2 cut(s)	22, 841
BciT130I	CCWGG	4 cut(s)	62, 233, 395, 419
BciVI	GTATCC	2 cut(s)	251, 383
BcuI	ACTAGT	1 cut(s)	736
BfaI	CTAG	3 cut(s)	548, 737, 842
BfmI	CTRYAG	3 cut(s)	303, 348, 743
BfuI	GTATCC	2 cut(s)	251, 383
BisI	GCNGC	5 cut(s)	312, 342, 415, 729, 858
BlpI	GCTNAGC	1 cut(s)	794
BlsI	GCNGC	5 cut(s)	313, 343, 416, 730, 859
Bme1390I	CCNGG	4 cut(s)	62, 233, 395, 419
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	171
BmiI	GGNNCC	1 cut(s)	126
BmrFI	CCNGG	4 cut(s)	62, 233, 395, 419
BmrI	ACTGGG	1 cut(s)	817
BmsI	GCATC	2 cut(s)	353, 775
BmuI	ACTGGG	1 cut(s)	817
Bpu1102I	GCTNAGC	1 cut(s)	794
BpuEI	CTTGAG	1 cut(s)	314
BsaHI	GRCGYC	1 cut(s)	894
BsaJI	CCNNGG	1 cut(s)	495
BsaWI	WCCGGW	1 cut(s)	470
Bsc4I	CCNNNNNNNGG	1 cut(s)	410
Bse1I	ACTGG	1 cut(s)	812
Bse21I	CCTNAGG	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	470
BseBI	CCWGG	4 cut(s)	62, 233, 395, 419
BseDI	CCNNGG	1 cut(s)	495
BseGI	GGATG	2 cut(s)	285, 852
BseLI	CCNNNNNNNGG	1 cut(s)	410
BseMII	CTCAG	3 cut(s)	259, 740, 785
BseNI	ACTGG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	807
BseXI	GCAGC	3 cut(s)	353, 715, 844
BseYI	CCCAGC	1 cut(s)	409
BsgI	GTGCAG	2 cut(s)	114, 526
BshFI	GGCC	2 cut(s)	417, 500
BsiHKAI	GWGCWC	2 cut(s)	438, 807
BsiSI	CCGG	1 cut(s)	471
BslI	CCNNNNNNNGG	1 cut(s)	410
BsnI	GGCC	2 cut(s)	417, 500
Bsp1286I	GDGCHC	2 cut(s)	438, 807
Bsp13I	TCCGGA	1 cut(s)	470
Bsp143I	GATC	1 cut(s)	693
Bsp1720I	GCTNAGC	1 cut(s)	794
Bsp19I	CCATGG	1 cut(s)	495
BspACI	CCGC	2 cut(s)	312, 414
BspANI	GGCC	2 cut(s)	417, 500
BspCNI	CTCAG	3 cut(s)	258, 741, 786
BspEI	TCCGGA	1 cut(s)	470
BspLI	GGNNCC	1 cut(s)	126
BspPI	GGATC	1 cut(s)	688
BsrI	ACTGG	1 cut(s)	812
BssECI	CCNNGG	1 cut(s)	495
BssMI	GATC	1 cut(s)	693
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	1 cut(s)	495
Bst2UI	CCWGG	4 cut(s)	62, 233, 395, 419
Bst4CI	ACNGT	1 cut(s)	94
BstACI	GRCGYC	1 cut(s)	894
BstDEI	CTNAG	3 cut(s)	245, 749, 794
BstDSI	CCRYGG	1 cut(s)	495
BstF5I	GGATG	2 cut(s)	285, 852
BstKTI	GATC	1 cut(s)	696
BstMBI	GATC	1 cut(s)	693
BstMWI	GCNNNNNNNGC	2 cut(s)	728, 785
BstNI	CCWGG	4 cut(s)	62, 233, 395, 419
BstNSI	RCATGY	2 cut(s)	773, 883
BstSCI	CCNGG	4 cut(s)	60, 231, 393, 417
BstSFI	CTRYAG	3 cut(s)	303, 348, 743
BstSLI	GKGCMC	1 cut(s)	807
BstV1I	GCAGC	3 cut(s)	353, 715, 844
BstXI	CCANNNNNNTGG	1 cut(s)	181
Bsu36I	CCTNAGG	1 cut(s)	245
BsuI	GTATCC	2 cut(s)	251, 383
BsuRI	GGCC	2 cut(s)	417, 500
BtgI	CCRYGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	285, 852
BtsIMutI	CAGTG	4 cut(s)	30, 131, 661, 805
Cfr13I	GGNCC	1 cut(s)	171
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	4 cut(s)	496, 502, 770, 880
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	3 cut(s)	245, 749, 794
DpnI	GATC	1 cut(s)	695
DpnII	GATC	1 cut(s)	693
EaeI	YGGCCR	1 cut(s)	498
Ecl136II	GAGCTC	1 cut(s)	436
Eco130I	CCWWGG	1 cut(s)	495
Eco24I	GRGCYC	1 cut(s)	438
Eco32I	GATATC	1 cut(s)	223
Eco47I	GGWCC	1 cut(s)	171
Eco53kI	GAGCTC	1 cut(s)	436
Eco81I	CCTNAGG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	436
EcoRII	CCWGG	4 cut(s)	60, 231, 393, 417
EcoRV	GATATC	1 cut(s)	223
EcoT14I	CCWWGG	1 cut(s)	495
EcoT38I	GRGCYC	1 cut(s)	438
ErhI	CCWWGG	1 cut(s)	495
FaeI	CATG	4 cut(s)	499, 505, 773, 883
FalI	AAGNNNNNCTT	2 cut(s)	247, 279
FatI	CATG	4 cut(s)	495, 501, 769, 879
Fnu4HI	GCNGC	5 cut(s)	312, 342, 415, 729, 858
FokI	GGATG	2 cut(s)	272, 859
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	5 cut(s)	312, 342, 415, 729, 858
FspBI	CTAG	3 cut(s)	548, 737, 842
GluI	GCNGC	5 cut(s)	312, 342, 415, 729, 858
GsaI	CCCAGC	1 cut(s)	413
HaeIII	GGCC	2 cut(s)	417, 500
HapII	CCGG	1 cut(s)	471
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	4 cut(s)	499, 505, 773, 883
HindIII	AAGCTT	2 cut(s)	53, 525
HpaII	CCGG	1 cut(s)	471
HphI	GGTGA	2 cut(s)	544, 794
Hpy166II	GTNNAC	2 cut(s)	391, 805
Hpy188I	TCNGA	2 cut(s)	49, 199
Hpy188III	TCNNGA	1 cut(s)	471
Hpy8I	GTNNAC	2 cut(s)	391, 805
Hpy99I	CGWCG	2 cut(s)	896, 899
HpyAV	CCTTC	2 cut(s)	565, 830
HpyCH4III	ACNGT	1 cut(s)	94
HpyCH4IV	ACGT	1 cut(s)	894
HpyCH4V	TGCA	8 cut(s)	131, 218, 507, 731, 788, 805, 860, 879
HpyF10VI	GCNNNNNNNGC	2 cut(s)	728, 785
HpyF3I	CTNAG	3 cut(s)	245, 749, 794
HpySE526I	ACGT	1 cut(s)	894
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	4 cut(s)	499, 505, 773, 883
Kpn2I	TCCGGA	1 cut(s)	470
Kzo9I	GATC	1 cut(s)	693
LmnI	GCTCC	2 cut(s)	130, 441
Lsp1109I	GCAGC	3 cut(s)	353, 715, 844
LweI	GCATC	2 cut(s)	353, 775
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	3 cut(s)	548, 737, 842
MaeII	ACGT	1 cut(s)	894
MaeIII	GTNAC	3 cut(s)	325, 541, 550
MalI	GATC	1 cut(s)	695
MboI	GATC	1 cut(s)	693
MboII	GAAGA	3 cut(s)	16, 267, 607
MfeI	CAATTG	1 cut(s)	377
MhlI	GDGCHC	2 cut(s)	438, 807
MlsI	TGGCCA	1 cut(s)	500
MluCI	AATT	3 cut(s)	18, 377, 486
MluNI	TGGCCA	1 cut(s)	500
MmeI	TCCRAC	3 cut(s)	72, 130, 313
MnlI	CCTC	3 cut(s)	55, 115, 254
Mox20I	TGGCCA	1 cut(s)	500
MroI	TCCGGA	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	597
MscI	TGGCCA	1 cut(s)	500
MseI	TTAA	5 cut(s)	66, 111, 452, 645, 687
MslI	CAYNNNNRTG	2 cut(s)	179, 500
Msp20I	TGGCCA	1 cut(s)	500
MspA1I	CMGCKG	1 cut(s)	748
MspI	CCGG	1 cut(s)	471
MspR9I	CCNGG	4 cut(s)	62, 233, 395, 419
MunI	CAATTG	1 cut(s)	377
MvaI	CCWGG	4 cut(s)	62, 233, 395, 419
MwoI	GCNNNNNNNGC	2 cut(s)	728, 785
NcoI	CCATGG	1 cut(s)	495
NdeII	GATC	1 cut(s)	693
NlaIII	CATG	4 cut(s)	499, 505, 773, 883
NlaIV	GGNNCC	1 cut(s)	126
NmuCI	GTSAC	1 cut(s)	550
NspI	RCATGY	2 cut(s)	773, 883
PciI	ACATGT	1 cut(s)	769
PdmI	GAANNNNTTC	1 cut(s)	597
PkrI	GCNGC	5 cut(s)	313, 343, 416, 730, 859
PscI	ACATGT	1 cut(s)	769
Psp124BI	GAGCTC	1 cut(s)	438
Psp6I	CCWGG	4 cut(s)	60, 231, 393, 417
PspFI	CCCAGC	1 cut(s)	409
PspGI	CCWGG	4 cut(s)	60, 231, 393, 417
PspN4I	GGNNCC	1 cut(s)	126
PspPI	GGNCC	1 cut(s)	171
PvuII	CAGCTG	1 cut(s)	748
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	179, 500
SacI	GAGCTC	1 cut(s)	438
SaqAI	TTAA	5 cut(s)	66, 111, 452, 645, 687
SatI	GCNGC	5 cut(s)	312, 342, 415, 729, 858
Sau3AI	GATC	1 cut(s)	693
Sau96I	GGNCC	1 cut(s)	171
ScrFI	CCNGG	4 cut(s)	62, 233, 395, 419
SduI	GDGCHC	2 cut(s)	438, 807
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	2 cut(s)	353, 775
SfcI	CTRYAG	3 cut(s)	303, 348, 743
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	2 cut(s)	179, 500
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
SpeI	ACTAGT	1 cut(s)	736
Sse9I	AATT	3 cut(s)	18, 377, 486
SsiI	CCGC	2 cut(s)	312, 414
SspMI	CTAG	3 cut(s)	548, 737, 842
SstI	GAGCTC	1 cut(s)	438
StyD4I	CCNGG	4 cut(s)	60, 231, 393, 417
StyI	CCWWGG	1 cut(s)	495
TaaI	ACNGT	1 cut(s)	94
TaiI	ACGT	1 cut(s)	897
TaqI	TCGA	3 cut(s)	588, 891, 897
TasI	AATT	3 cut(s)	18, 377, 486
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	2 cut(s)	314, 417
Tru1I	TTAA	5 cut(s)	66, 111, 452, 645, 687
Tru9I	TTAA	5 cut(s)	66, 111, 452, 645, 687
TscAI	CASTG	4 cut(s)	30, 138, 661, 812
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	3 cut(s)	341, 728, 857
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	3 cut(s)	17, 519, 606
TspRI	CASTG	4 cut(s)	30, 138, 661, 812
VneI	GTGCAC	1 cut(s)	803
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	1 cut(s)	18
XceI	RCATGY	2 cut(s)	773, 883
XmnI	GAANNNNTTC	1 cut(s)	597
XspI	CTAG	3 cut(s)	548, 737, 842
ZraI	GACGTC	1 cut(s)	895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.