Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

6612119 .. 6613904

Gene Structure 1786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0076900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATGTCAAAAGAAACCATGTGTTCATTGCCATATTCATCATCTTAGGGACTGTAGCATCTCAAGCCACATCCCGCGCATTGTATGCTTCTTCCTTTGCTGAAAAACATGAGCAATGGATGGAAAAGTTCGGACGCGTTTACCCGGATAGTGCAGAGAAGGAGAGGCGTTTTGCCATATTCATGCAGAATGTGGAGTATGTGGAGAAGTTCAATAATGAAGGGAACAAAACTTACAAGTTAAGCATCAACGAATTCTCTGACATGACCAATGAAGAGTTCCTGAGGCGTCGTACTGGGTACAAAATGGCCACCAGCTCAAACTCAACCTCATTCAGGTACCAAAGTCTGGCAAGTACTGAAGTTCCAACTAGTGTTGACTGGAGGGAAAAAGGAGCTGTCACACCGATAAAGGATCAAGGAAGCTGCAGTGTTTGCTGGGCCTTTACCGCGGTAGCAGCTGTAGAAGGGCTTACCAAAATCAAAACTGACCAACTGATCTCTCTGTCTGAGCAACAACTCGTGGATTGTGATGATGGTAACTTTGGCTGTCAACCTGGTTACATAAATGAAGCCTTTGACTACATCAAGCAAAGCGGAATTGCACGCGAAGAAAACTATCAATACCTAAATTCCGACAGTGCCACATGCGACACTAGCAAGGCAAATGAGCGCGCTGCTCAGATAACGGGTTATGAAAATGTGCCGACCAATAGTGAAAGTGATCTACTCAAGGCTGTGGCCATGCAACCAGTCTCAGTTGCCATTGACGCCAGCGGAGAAGCCTTTCAGTCATACAGTAGTGGGGTGTTCTCTGGTGATTGTGGTACCAGCCTGAACCATGCTGTAACAGCCGTTGGGTATGGGACGACTGAAGATGGCACCGATTATTGGTTGATGAAGAATTCATGGGGTGAGACTTGGGGTGAAAATGGCTACATAAAAATTCTTAGAAATGCTAATCCCCCATATGGTCTTTGTGGCGTTGCCATCCAAGCTCTCTATCCGACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

338

Amino Acids

37.48

Weight (kDa)

4.93

Isoelectric Point (pI)

30.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Inhibitor_I29	PF08246	37 - 94	2.8e-21	Cathepsin propeptide inhibitor domain (I29)
Peptidase_C1	PF00112	122 - 337	6.2e-78	Papain family cysteine protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	339, 827
AccB1I	GGYRCC	3 cut(s)	339, 827, 881
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	5 cut(s)	78, 138, 452, 609, 675
AciI	CCGC	5 cut(s)	76, 450, 452, 597, 777
AclWI	GGATC	1 cut(s)	423
AcoI	YGGCCR	2 cut(s)	309, 741
AcsI	RAATTY	4 cut(s)	254, 631, 904, 945
AcuI	CTGAAG	2 cut(s)	381, 894
AcyI	GRCGYC	2 cut(s)	289, 771
AfaI	GTAC	5 cut(s)	295, 302, 341, 358, 829
AfiI	CCNNNNNNNGG	4 cut(s)	336, 349, 891, 971
AflIII	ACRYGT	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	214
AhlI	ACTAGT	1 cut(s)	371
AjnI	CCWGG	1 cut(s)	556
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	5 cut(s)	318, 398, 426, 461, 998
AluI	AGCT	5 cut(s)	318, 398, 426, 461, 998
Alw26I	GTCTC	2 cut(s)	760, 911
AlwI	GGATC	1 cut(s)	423
AoxI	GGCC	3 cut(s)	309, 441, 741
ApeKI	GCWGC	3 cut(s)	426, 458, 677
ApoI	RAATTY	4 cut(s)	254, 631, 904, 945
Asp700I	GAANNNNTTC	1 cut(s)	786
Asp718I	GGTACC	2 cut(s)	339, 827
AspLEI	GCGC	3 cut(s)	80, 675, 677
AspS9I	GGNCC	1 cut(s)	441
AsuC2I	CCSGG	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	830, 926, 938
AxyI	CCTNAGG	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	331, 364
BalI	TGGCCA	2 cut(s)	311, 743
BanI	GGYRCC	3 cut(s)	339, 827, 881
BauI	CACGAG	1 cut(s)	521
BbvI	GCAGC	3 cut(s)	413, 470, 664
BccI	CCATC	4 cut(s)	115, 530, 872, 998
BceAI	ACGGC	1 cut(s)	839
BciT130I	CCWGG	1 cut(s)	558
BcnI	CCSGG	1 cut(s)	146
BcoDI	GTCTC	2 cut(s)	760, 911
BcuI	ACTAGT	1 cut(s)	371
BfaI	CTAG	2 cut(s)	372, 657
BfmI	CTRYAG	3 cut(s)	54, 427, 462
BisI	GCNGC	3 cut(s)	427, 459, 678
BlsI	GCNGC	3 cut(s)	428, 460, 679
BmcAI	AGTACT	1 cut(s)	358
Bme1390I	CCNGG	2 cut(s)	146, 558
BmgT120I	GGNCC	1 cut(s)	441
BmiI	GGNNCC	3 cut(s)	341, 829, 883
BmrFI	CCNGG	2 cut(s)	146, 558
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	2 cut(s)	68, 255
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	403
BpuEI	CTTGAG	2 cut(s)	48, 716
BpuMI	CCSGG	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	289, 771
BsaJI	CCNNGG	1 cut(s)	450
Bsc4I	CCNNNNNNNGG	4 cut(s)	336, 349, 891, 971
Bse1I	ACTGG	3 cut(s)	301, 386, 752
Bse21I	CCTNAGG	1 cut(s)	284
Bse3DI	GCAATG	2 cut(s)	27, 122
BseBI	CCWGG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	4 cut(s)	10, 71, 126, 990
BseLI	CCNNNNNNNGG	4 cut(s)	336, 349, 891, 971
BseMI	GCAATG	2 cut(s)	27, 122
BseMII	CTCAG	4 cut(s)	275, 501, 695, 771
BseNI	ACTGG	3 cut(s)	301, 386, 752
BsePI	GCGCGC	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	413, 470, 664
BseYI	CCCAGC	1 cut(s)	438
BsgI	GTGCAG	1 cut(s)	174
Bsh1236I	CGCG	5 cut(s)	78, 138, 452, 609, 675
BshFI	GGCC	3 cut(s)	311, 443, 743
BshNI	GGYRCC	3 cut(s)	339, 827, 881
BsiSI	CCGG	1 cut(s)	146
BslFI	GGGAC	2 cut(s)	64, 880
BslI	CCNNNNNNNGG	4 cut(s)	336, 349, 891, 971
BsmAI	GTCTC	2 cut(s)	760, 911
BsmFI	GGGAC	2 cut(s)	64, 880
BsnI	GGCC	3 cut(s)	311, 443, 743
Bsp143I	GATC	3 cut(s)	415, 498, 724
BspACI	CCGC	5 cut(s)	76, 450, 452, 597, 777
BspANI	GGCC	3 cut(s)	311, 443, 743
BspCNI	CTCAG	4 cut(s)	276, 502, 694, 770
BspFNI	CGCG	5 cut(s)	78, 138, 452, 609, 675
BspLI	GGNNCC	3 cut(s)	341, 829, 883
BspMAI	CTGCAG	1 cut(s)	431
BspPI	GGATC	1 cut(s)	423
BspT107I	GGYRCC	3 cut(s)	339, 827, 881
BsrDI	GCAATG	2 cut(s)	27, 122
BsrI	ACTGG	3 cut(s)	301, 386, 752
BssECI	CCNNGG	1 cut(s)	450
BssHII	GCGCGC	1 cut(s)	673
BssMI	GATC	3 cut(s)	415, 498, 724
BssNI	GRCGYC	2 cut(s)	289, 771
BssSI	CACGAG	1 cut(s)	521
Bst2BI	CACGAG	1 cut(s)	521
Bst2UI	CCWGG	1 cut(s)	558
Bst4CI	ACNGT	3 cut(s)	55, 641, 800
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	2 cut(s)	289, 771
BstAPI	GCANNNNNTGC	2 cut(s)	86, 435
BstC8I	GCNNGC	3 cut(s)	607, 675, 775
BstDEI	CTNAG	6 cut(s)	46, 284, 510, 681, 757, 950
BstDSI	CCRYGG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	334
BstF5I	GGATG	4 cut(s)	10, 71, 126, 990
BstFNI	CGCG	5 cut(s)	78, 138, 452, 609, 675
BstHHI	GCGC	3 cut(s)	80, 675, 677
BstKTI	GATC	3 cut(s)	418, 501, 727
BstMAI	GTCTC	2 cut(s)	760, 911
BstMBI	GATC	3 cut(s)	415, 498, 724
BstMWI	GCNNNNNNNGC	9 cut(s)	65, 86, 435, 449, 458, 657, 770, 851, 995
BstNI	CCWGG	1 cut(s)	558
BstNSI	RCATGY	1 cut(s)	651
BstSCI	CCNGG	2 cut(s)	144, 556
BstSFI	CTRYAG	3 cut(s)	54, 427, 462
BstUI	CGCG	5 cut(s)	78, 138, 452, 609, 675
BstV1I	GCAGC	3 cut(s)	413, 470, 664
Bsu36I	CCTNAGG	1 cut(s)	284
BsuRI	GGCC	3 cut(s)	311, 443, 743
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	4 cut(s)	10, 71, 126, 990
BtsI	GCAGTG	1 cut(s)	436
BtsIMutI	CAGTG	2 cut(s)	436, 646
Cac8I	GCNNGC	3 cut(s)	607, 675, 775
CfoI	GCGC	3 cut(s)	80, 675, 677
Cfr13I	GGNCC	1 cut(s)	441
Cfr42I	CCGCGG	1 cut(s)	453
CseI	GACGC	3 cut(s)	144, 278, 779
CsiI	ACCWGGT	1 cut(s)	556
Csp6I	GTAC	5 cut(s)	294, 301, 340, 357, 828
CviAII	CATG	8 cut(s)	20, 110, 184, 265, 648, 745, 842, 909
CviQI	GTAC	5 cut(s)	294, 301, 340, 357, 828
DdeI	CTNAG	6 cut(s)	46, 284, 510, 681, 757, 950
DpnI	GATC	3 cut(s)	417, 500, 726
DpnII	GATC	3 cut(s)	415, 498, 724
EaeI	YGGCCR	2 cut(s)	309, 741
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco57I	CTGAAG	2 cut(s)	381, 894
Eco81I	CCTNAGG	1 cut(s)	284
EcoNI	CCTNNNNNAGG	1 cut(s)	334
EcoRI	GAATTC	2 cut(s)	254, 904
EcoRII	CCWGG	1 cut(s)	556
FaeI	CATG	8 cut(s)	23, 113, 187, 268, 651, 748, 845, 912
FaqI	GGGAC	2 cut(s)	64, 880
FatI	CATG	8 cut(s)	19, 109, 183, 264, 647, 744, 841, 908
FauI	CCCGC	1 cut(s)	83
FauNDI	CATATG	1 cut(s)	970
Fnu4HI	GCNGC	3 cut(s)	427, 459, 678
FokI	GGATG	4 cut(s)	17, 58, 133, 977
Fsp4HI	GCNGC	3 cut(s)	427, 459, 678
FspBI	CTAG	2 cut(s)	372, 657
GlaI	GCGC	3 cut(s)	79, 674, 676
GluI	GCNGC	3 cut(s)	427, 459, 678
GsaI	CCCAGC	1 cut(s)	442
GsuI	CTGGAG	1 cut(s)	403
HaeIII	GGCC	3 cut(s)	311, 443, 743
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	3 cut(s)	144, 278, 779
HhaI	GCGC	3 cut(s)	80, 675, 677
Hin1I	GRCGYC	2 cut(s)	289, 771
Hin1II	CATG	8 cut(s)	23, 113, 187, 268, 651, 748, 845, 912
Hin6I	GCGC	3 cut(s)	78, 673, 675
HinP1I	GCGC	3 cut(s)	78, 673, 675
HincII	GTYRAC	2 cut(s)	379, 554
HindII	GTYRAC	2 cut(s)	379, 554
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	3 cut(s)	830, 926, 938
Hpy166II	GTNNAC	3 cut(s)	142, 379, 554
Hpy188I	TCNGA	6 cut(s)	134, 262, 511, 637, 684, 1008
Hpy188III	TCNNGA	1 cut(s)	283
Hpy8I	GTNNAC	3 cut(s)	142, 379, 554
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	154, 215, 461
HpyCH4III	ACNGT	3 cut(s)	55, 641, 800
HpyCH4V	TGCA	5 cut(s)	155, 187, 429, 605, 748
HpyF10VI	GCNNNNNNNGC	9 cut(s)	65, 86, 435, 449, 458, 657, 770, 851, 995
HpyF3I	CTNAG	6 cut(s)	46, 284, 510, 681, 757, 950
Hsp92I	GRCGYC	2 cut(s)	289, 771
Hsp92II	CATG	8 cut(s)	23, 113, 187, 268, 651, 748, 845, 912
HspAI	GCGC	3 cut(s)	78, 673, 675
KpnI	GGTACC	2 cut(s)	343, 831
KspI	CCGCGG	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	415, 498, 724
LmnI	GCTCC	1 cut(s)	395
Lsp1109I	GCAGC	3 cut(s)	413, 470, 664
LweI	GCATC	2 cut(s)	68, 255
MabI	ACCWGGT	1 cut(s)	556
MaeI	CTAG	2 cut(s)	372, 657
MaeIII	GTNAC	4 cut(s)	400, 539, 560, 847
MalI	GATC	3 cut(s)	417, 500, 726
MboI	GATC	3 cut(s)	415, 498, 724
MboII	GAAGA	5 cut(s)	84, 287, 623, 887, 913
MlsI	TGGCCA	2 cut(s)	311, 743
MluCI	AATT	5 cut(s)	254, 600, 631, 904, 945
MluI	ACGCGT	1 cut(s)	136
MluNI	TGGCCA	2 cut(s)	311, 743
MmeI	TCCRAC	2 cut(s)	392, 660
MnlI	CCTC	4 cut(s)	159, 279, 340, 378
Mox20I	TGGCCA	2 cut(s)	311, 743
MroXI	GAANNNNTTC	1 cut(s)	786
MscI	TGGCCA	2 cut(s)	311, 743
MseI	TTAA	1 cut(s)	242
MslI	CAYNNNNRTG	1 cut(s)	182
Msp20I	TGGCCA	2 cut(s)	311, 743
MspA1I	CMGCKG	3 cut(s)	452, 461, 777
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	146, 558
MvaI	CCWGG	1 cut(s)	558
MvnI	CGCG	5 cut(s)	78, 138, 452, 609, 675
MwoI	GCNNNNNNNGC	9 cut(s)	65, 86, 435, 449, 458, 657, 770, 851, 995
NciI	CCSGG	1 cut(s)	146
NdeI	CATATG	1 cut(s)	970
NdeII	GATC	3 cut(s)	415, 498, 724
NlaIII	CATG	8 cut(s)	23, 113, 187, 268, 651, 748, 845, 912
NlaIV	GGNNCC	3 cut(s)	341, 829, 883
NmuCI	GTSAC	1 cut(s)	400
NspI	RCATGY	1 cut(s)	651
PauI	GCGCGC	1 cut(s)	673
PdmI	GAANNNNTTC	1 cut(s)	786
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	3 cut(s)	428, 460, 679
Psp6I	CCWGG	1 cut(s)	556
PspFI	CCCAGC	1 cut(s)	438
PspGI	CCWGG	1 cut(s)	556
PspN4I	GGNNCC	3 cut(s)	341, 829, 883
PspPI	GGNCC	1 cut(s)	441
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
PstI	CTGCAG	1 cut(s)	431
PteI	GCGCGC	1 cut(s)	673
PvuII	CAGCTG	1 cut(s)	461
RsaI	GTAC	5 cut(s)	295, 302, 341, 358, 829
RsaNI	GTAC	5 cut(s)	294, 301, 340, 357, 828
RseI	CAYNNNNRTG	1 cut(s)	182
SacII	CCGCGG	1 cut(s)	453
SaqAI	TTAA	1 cut(s)	242
SatI	GCNGC	3 cut(s)	427, 459, 678
Sau3AI	GATC	3 cut(s)	415, 498, 724
Sau96I	GGNCC	1 cut(s)	441
ScaI	AGTACT	1 cut(s)	358
ScrFI	CCNGG	2 cut(s)	146, 558
SetI	ASST	9 cut(s)	320, 332, 341, 400, 428, 463, 559, 630, 1000
SexAI	ACCWGGT	1 cut(s)	556
SfaNI	GCATC	2 cut(s)	68, 255
SfcI	CTRYAG	3 cut(s)	54, 427, 462
Sfr303I	CCGCGG	1 cut(s)	453
SgrBI	CCGCGG	1 cut(s)	453
SmiMI	CAYNNNNRTG	1 cut(s)	182
SmlI	CTYRAG	2 cut(s)	63, 731
SmoI	CTYRAG	2 cut(s)	63, 731
SpeI	ACTAGT	1 cut(s)	371
Sse9I	AATT	5 cut(s)	254, 600, 631, 904, 945
SsiI	CCGC	5 cut(s)	76, 450, 452, 597, 777
SspMI	CTAG	2 cut(s)	372, 657
StyD4I	CCNGG	2 cut(s)	144, 556
TaaI	ACNGT	3 cut(s)	55, 641, 800
TasI	AATT	5 cut(s)	254, 600, 631, 904, 945
TatI	WGTACW	1 cut(s)	356
Tru1I	TTAA	1 cut(s)	242
Tru9I	TTAA	1 cut(s)	242
TscAI	CASTG	2 cut(s)	436, 646
TseFI	GTSAC	1 cut(s)	400
TseI	GCWGC	3 cut(s)	426, 458, 677
Tsp45I	GTSAC	1 cut(s)	400
TspDTI	ATGAA	9 cut(s)	16, 28, 172, 234, 288, 585, 711, 897, 914
TspRI	CASTG	2 cut(s)	436, 646
Van91I	CCANNNNNTGG	1 cut(s)	349
XagI	CCTNNNNNAGG	1 cut(s)	334
XapI	RAATTY	4 cut(s)	254, 631, 904, 945
XceI	RCATGY	1 cut(s)	651
XmnI	GAANNNNTTC	1 cut(s)	786
XspI	CTAG	2 cut(s)	372, 657
ZrmI	AGTACT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.