Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0002542

Physical Location & Seq

Genomic Coordinates Reverse (-)

591784 .. 596493

Gene Structure 4710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG009100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3186 bp

ATGACAGACATCGCAAGCCCTGTGCACCAGTTCGACCTCGAGTCTCAGCATACAGTGTTGCTGAAAACCAGTAGTACTAATCCACCAATAGACCACTGGCGCTGGATTTATGTGATTCTCCAAGTGCGCAAACTCCTCATCTCATCCAGAGCCAAGAAACCTACAAACGGGTCTCAACCACCTCACCACCTCTCATCAGCTACAATCCCTTATGCTATTATCAGCACCAGCACTACTACTGGTGATGCAGACTTGCAACTGACATCAGGGACTACAGAAATCTTACCTGCCTCGCCTCAATTTTCTGGAGATGTCCATCGGATCGGGGAGGATGATGGTAGTACTGCTGCTACTGATGCAAAACTCCAGCGTACAAATATTTCCAAGATAGTCACGGAGAAAGACTTTGAGTCCTTACAGGAGTTTGGATGCGTCCAAGGAATTGCAGAGGCACTCAATAGCGATTTACAGAATGGAATCTCATGCAATGAAGAAGATGTGAGTTCTCGCCGCCCAGTCAGTGCCCTCTTAACTACACAGGCTCCTGTTCAAGGCTTCTTCAAACTGCTCCTACAGTCCAGCAACAACCACATCATTTTCCTTCTCTTGGTGGCTGCAGTGCTGTCGATTGGCTTTGGTATGAAGGAGGAAGGCCCAAGCACCGGTTGGTATGAAGGGGCCATCATAGTGTTTGTCATCATCATACTCGTTGTTGCGCCTTCCATACGCGATTTTTGGCTTCAAAATCCACAGAACCATGCAATGAAACAGACTGCAGGGGCCATTAAAATGGTGGTTGAGGTCATCAGAGGGGGATCCCCATGTGAAATACCCACATGTGATGTTGTTTCAGGTGACATAGTGTGCTTGAAACAGGGATCTACAGTTCCCGGTGATGGTTTGTTTGTTTCTGGTGAGTTGTTTGTATTGGATGATGGTACAGTGGCAACCATTTATGACAAGAAACCATTCTTGTTCTATGGTTCAAAGGTGGTTGCTGGAAGTGGTCGCATGCTTGTAACGTCTGTGGGCATGGACACAGCATGGGGTGAGCTGATGAAGAAAGTAGCCAATACTCCTAACCGGGCTCATTTACCGGCTCAACTTGATAAGGTCAGCACAGGCACGCAGATTATAGGGATCTCAATCTCTATTCTCATCCTGGTAGTGTTGTTCTTCCGTTTCATGGTTGAAAGGGAAGACAATCACTCTGGCCTCCCAGACCTTAAGGGGAAGCCAACTGCAAGCAAGGAGATAATGAATTTAATTGAGAAAATTGTGATGAAACCAAGTGGTCGGATCAGTATCCTAACGACATCTCTGGCTATATTCCTCGTAGGAGTAGTGGAAGGAATACCTCTTTTTGTTACACTTGCCATAAGGTATTGGAATAAGAAGACTTTATCTGGAAAGGCCACTGCTCGAGGGACTTTGGCGTGTGTCACGGTGGGCTCTATCACAACTATTTGCACTGACAAAACTGGCGTGCTGAAATTGTCAGTAGACAAGTGCTACATCGGGGATGAAGTCATAGAAACCGACTATGTCACTAGAATAGACACACATGTTCGTGAAGCTTTGTGCAATGGAATCAGCACACCCCTTCTGATGCCATCAAACCCTCATTGTAGCTCGAGAGAGGACCCGCTTCTTTCCTGGGCTTACCTCAATTTGGGAATGCAATATGAGATTTTGAGGCAAAATTGCACCATCCTGGAGATTAAAGGATTGAGCACCAACGATGAAGGCAGTGGAGTACTGATGAGAAGAAGCAGTGCTGACAACGAAGAAGATATGCGCTTGCATTGGAAAGGACCTGCAACAACAATATTAGCCATGTGTTCGCACTACAATGACAACAAAGGGGAAACAAAGGTCATGGATGAACAAAGTATATTGGTTTTTAACCAAATTATAGAGGGCATGCAGTCCAAATATCTCAAGACCATTGCATTTGCTTACAAACAGACTGAGGTTTCAATGCTAGAAGAAAACAGCTTAATCTTAATAGCACTGCTAGGTGTGAGGTATTCATACTGCAGTGATATGGTGGAAGCTTGTAAAAAAGCTGGAGTCAACATCGTATTGGTCTCAGATGATAATGTTTCAGATCTGAAAGTCATTGCTCGTGAGTGTGGAATATTTCTGAACCCAAAGAGATTGGGAGTTGAAGGTGAAAGTTTTCGAAATAGTGCCCAAGAAAACAGGATGGACGACATGGCAAATAAAATATGTGTGATGGGAAACTCCATTCCTTCTGACAGGCTCCTTTTGGTGCAATGTCTGAAAGAAAGAGGCCATGTCGTAGCAATGGTTGGAGTCGGAACAAATGATGCTCCAACTCTGAAAGAAGCTGATGTGGGCATTGCAATGGGGACTTGGAGTAGTGGAGTGGCAAGAGAGAGTTCTGACATCATCATCTGGGACGGAAATGTTAGTTTCTTGGTCACCATTATTGGGTGTGGAAGAAGCATATACTATAACATTCAGAAGTACATTCAACTTGAGCTCACCATGAATATATCATGGCTGTTGATAACATCCGCTACCACAATGTGTTTAGGACAAAGTGCAATTGCAGCCATACAATTGGTCTGGGCAAACATGATTGTGACTCTTCTAGGTGGGCTTGCTCTATTGATGGAACCTCCAACAGAGGAACTAATGAAAAAGGCACCGGTCAAGCGAAATGAATCTCTCATTAGCAAGGCAATGTGGAGAAACATAGTCAGTCAAGCTTTATATCAGACTACCATCTTGGTCGCCTTTCAATTCAAAGGACCAACTATCCCAGGCATCAGCAAGAAGGTCAGTGAGTCCATTGTTTTCAACAGTTTTGTTCTCTGTCAGGTATTCAACCGAGTGAATTCAAGGGAACTCGAGAAGAAAAACGTATTTAGGGGCATAATTCACAATCTGTGGTTTTGGGTGGCTGTGGGTGCCATTCTTACCCTTCAGGTGAGTTTTGTTGAGATTGCACACATTCTGGTTGGCAATGCAAGGTTGAATTGGGCAGAGTGGGGTATATGTCTTCTAATTGGGATGGTTTCATGGGCAATTGATTTGATTGTTAAGTCTGCAACCAGTTTCATACTTAGCTCAGGATCCATTAGTATGCCTATGACACCCTCTAATGTTTCAGGATCCGCTTCTAATCTAGAGCTCCCACTCATTAACCCATCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase Hydrolase

Protein Analysis

1061

Amino Acids

115.88

Weight (kDa)

6.09

Isoelectric Point (pI)

35.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E1-E2_ATPase	PF00122	265 - 356	8.1e-10	P-type ATPase actuator domain
Cation_ATPase	PF13246	557 - 661	1e-08	P-type ATPase, cytoplasmic domain N
Cation_ATPase_C	PF00689	857 - 1025	2.9e-37	Cation transporting ATPase, C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002542)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g00630 FvH4_3g13880
prunus_persica	Prupe.4G007300_v2.0.a1 Prupe.4G007300_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0000841 RchiOBHm_Chr5g0000871
rosa_laevigata	RLG00000030901 RLG00000030902 RLG00000030903 RLG00000032693 RLG00000032697
rosa_multiflora	Rmu_co8361431.1_g000001 Rmu_sc0000255.1_g000013 Rmu_sc0000255.1_g000017 Rmu_sc0001979.1_g000005 Rmu_sc0002085.1_g000003 Rmu_sc0002085.1_g000004 Rmu_sc0010050.1_g000003 Rmu_sc0010050.1_g000006 Rmu_sc0019378.1_g000001 Rmu_sc0034511.1_g000001
rosa_roxburghii	Rroxscaffold_1G00056260 Rroxscaffold_1G00075400
rosa_rugosa	Rorug04G0387000 Rorug04G0387100 Rorug04G0387200 Rorug05G0076900
rosa_samantha	Rh5AG006900 Rh5AG007000 Rh5AG163100 Rh5BG009000 Rh5BG009100 Rh5BG162300 Rh5CG007600 Rh5CG007700 Rh5CG177100 Rh5DG007600 Rh5DG163600
rosa_wichuraiana	Rw5G000710 Rw5G000730 Rw5G014710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	128
Acc36I	ACCTGC	2 cut(s)	295, 1825
AccB1I	GGYRCC	2 cut(s)	2674, 2939
AccI	GTMKAC	1 cut(s)	1503
AccII	CGCG	1 cut(s)	729
AciI	CCGC	4 cut(s)	511, 1646, 2544, 3147
AcsI	RAATTY	2 cut(s)	1261, 2866
AcuI	CTGAAG	1 cut(s)	2939
AdeI	CACNNNGTG	1 cut(s)	2556
AfaI	GTAC	6 cut(s)	76, 343, 373, 940, 1758, 2495
AfiI	CCNNNNNNNGG	8 cut(s)	167, 551, 607, 662, 896, 1186, 1672, 2457
AflII	CTTAAG	1 cut(s)	1226
AflIII	ACRYGT	2 cut(s)	836, 1564
AgeI	ACCGGT	2 cut(s)	662, 2677
AhdI	GACNNNNNGTC	2 cut(s)	40, 409
AjnI	CCWGG	4 cut(s)	1161, 1655, 1713, 2791
AloI	GAACNNNNNNTCC	2 cut(s)	870, 902
Alw21I	GWGCWC	4 cut(s)	27, 1736, 2511, 3165
Alw26I	GTCTC	3 cut(s)	48, 177, 2095
Alw44I	GTGCAC	1 cut(s)	23
Ama87I	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
AoxI	GGCC	6 cut(s)	652, 678, 780, 1213, 1413, 2296
ApaLI	GTGCAC	1 cut(s)	23
ApeKI	GCWGC	3 cut(s)	347, 614, 2579
ApoI	RAATTY	2 cut(s)	1261, 2866
AsiGI	ACCGGT	2 cut(s)	662, 2677
Asp700I	GAANNNNTTC	2 cut(s)	968, 2181
AspLEI	GCGC	4 cut(s)	102, 129, 718, 1800
AspS9I	GGNCC	6 cut(s)	653, 678, 780, 1642, 1814, 2780
AsuC2I	CCSGG	2 cut(s)	891, 1085
AsuII	TTCGAA	1 cut(s)	2185
AvaI	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
AvaII	GGWCC	3 cut(s)	1642, 1814, 2780
BaeGI	GKGCMC	3 cut(s)	27, 526, 2197
BamHI	GGATCC	3 cut(s)	815, 3104, 3143
BanI	GGYRCC	2 cut(s)	2674, 2939
BanII	GRGCYC	4 cut(s)	1090, 1454, 2511, 3165
BauI	CACGAG	1 cut(s)	2127
BbsI	GAAGAC	3 cut(s)	1206, 1403, 3023
Bbv12I	GWGCWC	4 cut(s)	27, 1736, 2511, 3165
BbvI	GCAGC	3 cut(s)	334, 601, 2591
BcgI	CGANNNNNNTGC	2 cut(s)	606, 640
BciT130I	CCWGG	4 cut(s)	1163, 1657, 1715, 2793
BciVI	GTATCC	1 cut(s)	1316
BcnI	CCSGG	2 cut(s)	891, 1085
BcoDI	GTCTC	3 cut(s)	48, 177, 2095
BfaI	CTAG	5 cut(s)	1551, 1985, 2018, 2621, 3158
BfmI	CTRYAG	6 cut(s)	273, 572, 615, 774, 882, 2038
BfoI	RGCGCY	1 cut(s)	103
BfrI	CTTAAG	1 cut(s)	1226
BfuAI	ACCTGC	2 cut(s)	295, 1825
BfuI	GTATCC	1 cut(s)	1316
BglII	AGATCT	1 cut(s)	2110
BisI	GCNGC	4 cut(s)	348, 511, 615, 2580
BlsI	GCNGC	4 cut(s)	349, 512, 616, 2581
BmcAI	AGTACT	3 cut(s)	76, 343, 1758
Bme1390I	CCNGG	6 cut(s)	891, 1085, 1163, 1657, 1715, 2793
Bme18I	GGWCC	3 cut(s)	1642, 1814, 2780
BmeRI	GACNNNNNGTC	2 cut(s)	40, 409
BmeT110I	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
BmgT120I	GGNCC	6 cut(s)	653, 678, 780, 1642, 1814, 2780
BmrFI	CCNGG	6 cut(s)	891, 1085, 1163, 1657, 1715, 2793
BmrI	ACTGGG	1 cut(s)	509
BmsI	GCATC	6 cut(s)	235, 346, 419, 1599, 2323, 2805
BmuI	ACTGGG	1 cut(s)	509
BpiI	GAAGAC	3 cut(s)	1206, 1403, 3023
BpmI	CTGGAG	4 cut(s)	327, 350, 1736, 2091
Bpu10I	CCTNAGC	1 cut(s)	3100
Bpu14I	TTCGAA	1 cut(s)	2185
BpuEI	CTTGAG	2 cut(s)	1925, 2525
BpuMI	CCSGG	2 cut(s)	891, 1085
BsaBI	GATNNNNATC	3 cut(s)	315, 1145, 1304
BsaI	GGTCTC	2 cut(s)	177, 2095
BsaJI	CCNNGG	3 cut(s)	436, 1656, 2791
BsaWI	WCCGGW	2 cut(s)	662, 2677
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	8 cut(s)	167, 551, 607, 662, 896, 1186, 1672, 2457
Bse118I	RCCGGY	3 cut(s)	662, 1096, 2677
Bse1I	ACTGG	7 cut(s)	28, 69, 101, 244, 515, 1486, 3084
Bse8I	GATNNNNATC	3 cut(s)	315, 1145, 1304
BseBI	CCWGG	4 cut(s)	1163, 1657, 1715, 2793
BseDI	CCNNGG	3 cut(s)	436, 1656, 2791
BseJI	GATNNNNATC	3 cut(s)	315, 1145, 1304
BseLI	CCNNNNNNNGG	8 cut(s)	167, 551, 607, 662, 896, 1186, 1672, 2457
BseMII	CTCAG	4 cut(s)	59, 1962, 2106, 3114
BseNI	ACTGG	7 cut(s)	28, 69, 101, 244, 515, 1486, 3084
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	3 cut(s)	27, 526, 2197
BseXI	GCAGC	3 cut(s)	334, 601, 2591
Bsh1236I	CGCG	1 cut(s)	729
BshFI	GGCC	6 cut(s)	654, 680, 782, 1215, 1415, 2298
BshNI	GGYRCC	2 cut(s)	2674, 2939
BshTI	ACCGGT	2 cut(s)	662, 2677
BsiHKAI	GWGCWC	4 cut(s)	27, 1736, 2511, 3165
BsiHKCI	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
BsiSI	CCGG	5 cut(s)	663, 891, 1084, 1097, 2678
BslFI	GGGAC	4 cut(s)	283, 1441, 2389, 2438
BslI	CCNNNNNNNGG	8 cut(s)	167, 551, 607, 662, 896, 1186, 1672, 2457
BsmAI	GTCTC	3 cut(s)	48, 177, 2095
BsmFI	GGGAC	4 cut(s)	283, 1441, 2389, 2438
BsmI	GAATGC	1 cut(s)	1683
BsnI	GGCC	6 cut(s)	654, 680, 782, 1215, 1415, 2298
Bso31I	GGTCTC	2 cut(s)	177, 2095
BsoBI	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
Bsp119I	TTCGAA	1 cut(s)	2185
Bsp1286I	GDGCHC	8 cut(s)	27, 526, 1090, 1454, 1736, 2197, 2511, 3165
Bsp143I	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
BspACI	CCGC	4 cut(s)	511, 1646, 2544, 3147
BspANI	GGCC	6 cut(s)	654, 680, 782, 1215, 1415, 2298
BspCNI	CTCAG	4 cut(s)	58, 1963, 2105, 3113
BspFNI	CGCG	1 cut(s)	729
BspMAI	CTGCAG	3 cut(s)	619, 778, 2042
BspMI	ACCTGC	2 cut(s)	295, 1825
BspT104I	TTCGAA	1 cut(s)	2185
BspT107I	GGYRCC	2 cut(s)	2674, 2939
BspTI	CTTAAG	1 cut(s)	1226
BspTNI	GGTCTC	2 cut(s)	177, 2095
BsrFI	RCCGGY	3 cut(s)	662, 1096, 2677
BsrI	ACTGG	7 cut(s)	28, 69, 101, 244, 515, 1486, 3084
BssAI	RCCGGY	3 cut(s)	662, 1096, 2677
BssECI	CCNNGG	3 cut(s)	436, 1656, 2791
BssMI	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
BssSI	CACGAG	1 cut(s)	2127
BssT1I	CCWWGG	1 cut(s)	436
Bst2BI	CACGAG	1 cut(s)	2127
Bst2UI	CCWGG	4 cut(s)	1163, 1657, 1715, 2793
Bst4CI	ACNGT	6 cut(s)	55, 576, 886, 943, 1447, 2834
Bst6I	CTCTTC	1 cut(s)	2622
BstAFI	CTTAAG	1 cut(s)	1226
BstBI	TTCGAA	1 cut(s)	2185
BstC8I	GCNNGC	8 cut(s)	16, 1013, 1127, 1246, 1487, 1802, 1925, 2631
BstDEI	CTNAG	6 cut(s)	45, 1971, 2092, 3095, 3100, 3183
BstEII	GGTNACC	1 cut(s)	2446
BstENI	CCTNNNNNAGG	1 cut(s)	549
BstFNI	CGCG	1 cut(s)	729
BstH2I	RGCGCY	1 cut(s)	103
BstHHI	GCGC	4 cut(s)	102, 129, 718, 1800
BstKTI	GATC	8 cut(s)	324, 818, 881, 1143, 1302, 2113, 3107, 3146
BstMAI	GTCTC	3 cut(s)	48, 177, 2095
BstMBI	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
BstMWI	GCNNNNNNNGC	3 cut(s)	356, 2579, 2939
BstNI	CCWGG	4 cut(s)	1163, 1657, 1715, 2793
BstNSI	RCATGY	4 cut(s)	840, 1015, 1568, 1927
BstPI	GGTNACC	1 cut(s)	2446
BstSCI	CCNGG	6 cut(s)	889, 1083, 1161, 1655, 1713, 2791
BstSFI	CTRYAG	6 cut(s)	273, 572, 615, 774, 882, 2038
BstSLI	GKGCMC	3 cut(s)	27, 526, 2197
BstUI	CGCG	1 cut(s)	729
BstV1I	GCAGC	3 cut(s)	334, 601, 2591
BstV2I	GAAGAC	3 cut(s)	1206, 1403, 3023
BstX2I	RGATCY	6 cut(s)	815, 878, 1140, 2110, 3104, 3143
BstXI	CCANNNNNNTGG	2 cut(s)	790, 2590
BstYI	RGATCY	6 cut(s)	815, 878, 1140, 2110, 3104, 3143
BsuI	GTATCC	1 cut(s)	1316
BsuRI	GGCC	6 cut(s)	654, 680, 782, 1215, 1415, 2298
BtsI	GCAGTG	6 cut(s)	624, 1416, 1756, 1780, 2012, 2047
BveI	ACCTGC	2 cut(s)	295, 1825
Cac8I	GCNNGC	8 cut(s)	16, 1013, 1127, 1246, 1487, 1802, 1925, 2631
CfoI	GCGC	4 cut(s)	102, 129, 718, 1800
Cfr10I	RCCGGY	3 cut(s)	662, 1096, 2677
Cfr13I	GGNCC	6 cut(s)	653, 678, 780, 1642, 1814, 2780
CseI	GACGC	1 cut(s)	421
Csp6I	GTAC	6 cut(s)	75, 342, 372, 939, 1757, 2494
CspAI	ACCGGT	2 cut(s)	662, 2677
CviQI	GTAC	6 cut(s)	75, 342, 372, 939, 1757, 2494
DdeI	CTNAG	6 cut(s)	45, 1971, 2092, 3095, 3100, 3183
DpnI	GATC	8 cut(s)	323, 817, 880, 1142, 1301, 2112, 3106, 3145
DpnII	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
DraIII	CACNNNGTG	1 cut(s)	2556
DriI	GACNNNNNGTC	2 cut(s)	40, 409
Eam1104I	CTCTTC	1 cut(s)	2622
Eam1105I	GACNNNNNGTC	2 cut(s)	40, 409
EarI	CTCTTC	1 cut(s)	2622
Ecl136II	GAGCTC	2 cut(s)	2509, 3163
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	4 cut(s)	1090, 1454, 2511, 3165
Eco31I	GGTCTC	2 cut(s)	177, 2095
Eco47I	GGWCC	3 cut(s)	1642, 1814, 2780
Eco53kI	GAGCTC	2 cut(s)	2509, 3163
Eco57I	CTGAAG	1 cut(s)	2939
Eco88I	CYCGRG	4 cut(s)	38, 1422, 1633, 2879
Eco91I	GGTNACC	1 cut(s)	2446
EcoICRI	GAGCTC	2 cut(s)	2509, 3163
EcoNI	CCTNNNNNAGG	1 cut(s)	549
EcoO109I	RGGNCCY	2 cut(s)	1642, 1814
EcoO65I	GGTNACC	1 cut(s)	2446
EcoRI	GAATTC	1 cut(s)	2866
EcoRII	CCWGG	4 cut(s)	1161, 1655, 1713, 2791
EcoT14I	CCWWGG	1 cut(s)	436
EcoT38I	GRGCYC	4 cut(s)	1090, 1454, 2511, 3165
ErhI	CCWWGG	1 cut(s)	436
FaqI	GGGAC	4 cut(s)	283, 1441, 2389, 2438
FauI	CCCGC	1 cut(s)	1653
FblI	GTMKAC	1 cut(s)	1503
Fnu4HI	GCNGC	4 cut(s)	348, 511, 615, 2580
FriOI	GRGCYC	4 cut(s)	1090, 1454, 2511, 3165
Fsp4HI	GCNGC	4 cut(s)	348, 511, 615, 2580
FspBI	CTAG	5 cut(s)	1551, 1985, 2018, 2621, 3158
FspI	TGCGCA	1 cut(s)	128
GlaI	GCGC	4 cut(s)	101, 128, 717, 1799
GluI	GCNGC	4 cut(s)	348, 511, 615, 2580
GsuI	CTGGAG	4 cut(s)	327, 350, 1736, 2091
HaeII	RGCGCY	1 cut(s)	103
HaeIII	GGCC	6 cut(s)	654, 680, 782, 1215, 1415, 2298
HapII	CCGG	5 cut(s)	663, 891, 1084, 1097, 2678
HgaI	GACGC	1 cut(s)	421
HhaI	GCGC	4 cut(s)	102, 129, 718, 1800
Hin6I	GCGC	4 cut(s)	100, 127, 716, 1798
HinP1I	GCGC	4 cut(s)	100, 127, 716, 1798
HincII	GTYRAC	1 cut(s)	2077
HindII	GTYRAC	1 cut(s)	2077
HindIII	AAGCTT	3 cut(s)	1575, 2055, 2736
HpaII	CCGG	5 cut(s)	663, 891, 1084, 1097, 2678
Hpy166II	GTNNAC	3 cut(s)	25, 1504, 2077
Hpy8I	GTNNAC	3 cut(s)	25, 1504, 2077
HpyCH4III	ACNGT	6 cut(s)	55, 576, 886, 943, 1447, 2834
HpyCH4IV	ACGT	2 cut(s)	1022, 2892
HpyF10VI	GCNNNNNNNGC	3 cut(s)	356, 2579, 2939
HpyF3I	CTNAG	6 cut(s)	45, 1971, 2092, 3095, 3100, 3183
HpySE526I	ACGT	2 cut(s)	1022, 2892
HspAI	GCGC	4 cut(s)	100, 127, 716, 1798
Kzo9I	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
LmnI	GCTCC	5 cut(s)	547, 573, 2271, 2341, 3168
Lsp1109I	GCAGC	3 cut(s)	334, 601, 2591
LweI	GCATC	6 cut(s)	235, 346, 419, 1599, 2323, 2805
MaeI	CTAG	5 cut(s)	1551, 1985, 2018, 2621, 3158
MaeII	ACGT	2 cut(s)	1022, 2892
MaeIII	GTNAC	8 cut(s)	391, 854, 1018, 1366, 1441, 1546, 2446, 2611
MalI	GATC	8 cut(s)	323, 817, 880, 1142, 1301, 2112, 3106, 3145
MboI	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
MfeI	CAATTG	3 cut(s)	2574, 2588, 3057
MflI	RGATCY	6 cut(s)	815, 878, 1140, 2110, 3104, 3143
MhlI	GDGCHC	8 cut(s)	27, 526, 1090, 1454, 1736, 2197, 2511, 3165
MlyI	GAGTC	6 cut(s)	50, 419, 2082, 2328, 2608, 2825
MmeI	TCCRAC	5 cut(s)	1277, 2296, 2302, 2363, 2675
MroXI	GAANNNNTTC	2 cut(s)	968, 2181
MslI	CAYNNNNRTG	7 cut(s)	686, 788, 1569, 1851, 2369, 2609, 3113
MspCI	CTTAAG	1 cut(s)	1226
MspI	CCGG	5 cut(s)	663, 891, 1084, 1097, 2678
MspR9I	CCNGG	6 cut(s)	891, 1085, 1163, 1657, 1715, 2793
MunI	CAATTG	3 cut(s)	2574, 2588, 3057
Mva1269I	GAATGC	1 cut(s)	1683
MvaI	CCWGG	4 cut(s)	1163, 1657, 1715, 2793
MvnI	CGCG	1 cut(s)	729
MwoI	GCNNNNNNNGC	3 cut(s)	356, 2579, 2939
NciI	CCSGG	2 cut(s)	891, 1085
NdeII	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
NmuCI	GTSAC	6 cut(s)	391, 854, 1441, 1546, 2446, 2611
NsbI	TGCGCA	1 cut(s)	128
NspI	RCATGY	4 cut(s)	840, 1015, 1568, 1927
NspV	TTCGAA	1 cut(s)	2185
PaeI	GCATGC	2 cut(s)	1015, 1927
PaeR7I	CTCGAG	4 cut(s)	38, 1422, 1633, 2879
PciI	ACATGT	2 cut(s)	836, 1564
PctI	GAATGC	1 cut(s)	1683
PdmI	GAANNNNTTC	2 cut(s)	968, 2181
PfeI	GAWTC	4 cut(s)	115, 477, 1590, 2693
PflFI	GACNNNGTC	1 cut(s)	1544
PfoI	TCCNGGA	1 cut(s)	1713
PinAI	ACCGGT	2 cut(s)	662, 2677
PkrI	GCNGC	4 cut(s)	349, 512, 616, 2581
PleI	GAGTC	6 cut(s)	49, 418, 2081, 2327, 2608, 2824
PpsI	GAGTC	6 cut(s)	49, 418, 2081, 2327, 2608, 2824
PpuMI	RGGWCCY	2 cut(s)	1642, 1814
PscI	ACATGT	2 cut(s)	836, 1564
Psp124BI	GAGCTC	2 cut(s)	2511, 3165
Psp5II	RGGWCCY	2 cut(s)	1642, 1814
Psp6I	CCWGG	4 cut(s)	1161, 1655, 1713, 2791
PspEI	GGTNACC	1 cut(s)	2446
PspGI	CCWGG	4 cut(s)	1161, 1655, 1713, 2791
PspPI	GGNCC	6 cut(s)	653, 678, 780, 1642, 1814, 2780
PspPPI	RGGWCCY	2 cut(s)	1642, 1814
PspXI	VCTCGAGB	2 cut(s)	38, 1422
PstI	CTGCAG	3 cut(s)	619, 778, 2042
PsuI	RGATCY	6 cut(s)	815, 878, 1140, 2110, 3104, 3143
PsyI	GACNNNGTC	1 cut(s)	1544
RsaI	GTAC	6 cut(s)	76, 343, 373, 940, 1758, 2495
RsaNI	GTAC	6 cut(s)	75, 342, 372, 939, 1757, 2494
RseI	CAYNNNNRTG	7 cut(s)	686, 788, 1569, 1851, 2369, 2609, 3113
SacI	GAGCTC	2 cut(s)	2511, 3165
SatI	GCNGC	4 cut(s)	348, 511, 615, 2580
Sau3AI	GATC	8 cut(s)	321, 815, 878, 1140, 1299, 2110, 3104, 3143
Sau96I	GGNCC	6 cut(s)	653, 678, 780, 1642, 1814, 2780
ScaI	AGTACT	3 cut(s)	76, 343, 1758
SchI	GAGTC	6 cut(s)	50, 419, 2082, 2328, 2608, 2825
ScrFI	CCNGG	6 cut(s)	891, 1085, 1163, 1657, 1715, 2793
SduI	GDGCHC	8 cut(s)	27, 526, 1090, 1454, 1736, 2197, 2511, 3165
SfaNI	GCATC	6 cut(s)	235, 346, 419, 1599, 2323, 2805
SfcI	CTRYAG	6 cut(s)	273, 572, 615, 774, 882, 2038
Sfr274I	CTCGAG	4 cut(s)	38, 1422, 1633, 2879
SfuI	TTCGAA	1 cut(s)	2185
SinI	GGWCC	3 cut(s)	1642, 1814, 2780
SlaI	CTCGAG	4 cut(s)	38, 1422, 1633, 2879
SmiMI	CAYNNNNRTG	7 cut(s)	686, 788, 1569, 1851, 2369, 2609, 3113
SmlI	CTYRAG	7 cut(s)	38, 1226, 1422, 1633, 1940, 2504, 2879
SmoI	CTYRAG	7 cut(s)	38, 1226, 1422, 1633, 1940, 2504, 2879
SphI	GCATGC	2 cut(s)	1015, 1927
SsiI	CCGC	4 cut(s)	511, 1646, 2544, 3147
SspI	AATATT	3 cut(s)	379, 1830, 2142
SspMI	CTAG	5 cut(s)	1551, 1985, 2018, 2621, 3158
SstI	GAGCTC	2 cut(s)	2511, 3165
StyD4I	CCNGG	6 cut(s)	889, 1083, 1161, 1655, 1713, 2791
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	6 cut(s)	55, 576, 886, 943, 1447, 2834
TaiI	ACGT	2 cut(s)	1025, 2895
TaqI	TCGA	7 cut(s)	33, 39, 626, 1423, 1634, 2185, 2880
TatI	WGTACW	4 cut(s)	74, 341, 1756, 2493
TauI	GCSGC	1 cut(s)	513
TfiI	GAWTC	4 cut(s)	115, 477, 1590, 2693
TseFI	GTSAC	6 cut(s)	391, 854, 1441, 1546, 2446, 2611
TseI	GCWGC	3 cut(s)	347, 614, 2579
Tsp45I	GTSAC	6 cut(s)	391, 854, 1441, 1546, 2446, 2611
TspGWI	ACGGA	3 cut(s)	410, 1169, 2442
Tth111I	GACNNNGTC	1 cut(s)	1544
Vha464I	CTTAAG	1 cut(s)	1226
VneI	GTGCAC	1 cut(s)	23
VpaK11BI	GGWCC	3 cut(s)	1642, 1814, 2780
XagI	CCTNNNNNAGG	1 cut(s)	549
XapI	RAATTY	2 cut(s)	1261, 2866
XbaI	TCTAGA	1 cut(s)	3157
XceI	RCATGY	4 cut(s)	840, 1015, 1568, 1927
XcmI	CCANNNNNNNNNTGG	3 cut(s)	93, 663, 790
XhoI	CTCGAG	4 cut(s)	38, 1422, 1633, 2879
XmiI	GTMKAC	1 cut(s)	1503
XmnI	GAANNNNTTC	2 cut(s)	968, 2181
XspI	CTAG	5 cut(s)	1551, 1985, 2018, 2621, 3158
ZrmI	AGTACT	3 cut(s)	76, 343, 1758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.