FvH4_3g18082

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004848
Physical Location & Seq
Forward (+)
11516803 .. 11517972
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18082.t1

Sequence Viewer

Length: 1170 bp
ATGGGGAACATCTTCTCTTTATCATGCTATGCCATTCTTTCTCGCTGCTGGGATTACATTACCGGACGACGAGCAACATATGTAGGGCTTGAAGAAGGAGCTTTGAGCAATCCCTCTCCTTCATGGGATGGTTGTTTTGACGATGACATGATTGCTGAGATATTGTCACGGCTTCCGGTAAAATCTTTAATGCGGTTTCGTTGTGTGTGCAAGTCATGGCTTGCCTTAATCAACGATCCCAGTTTTGCTAGGAACCAAACCAGCAGGTTGAAGCTTCTTGAGGCAGTCAATCCTGCTAGATCCATAGACTTCGAAGCAATATTAAAGGACGACGATCGGCTAGAATACACTGTCCTTCCAGAAGCACCAATTTTATGGGTTCTGGGTTCCTGCAATGGCTTGATATGCCGGGAAGAAGACAAGGGCGGTGATCTTATCTTATGGAACCCTTCTACTCGAGATACATACAAGTTACCGGAACAAATCAACACTAGATATACTTGCTTTTATGGGTTTGGTTATGATTCCACTAGTGAAGATTACAAGATCATAGTAGGCCTTAAATCCGAAATTACAGTCTTTACGTTGAAAACTGGTGCATGGAAGATAATTGAACAGTCCCCGAACCTTGAAATATTTTATGGGCAGGGGTGTTTATTGAACGGAGCTCTATATTGGCTAGATGACAATTATTCAAGATTCAGAATAATCTCTTTTGATCTAGCGGAGGAGAAATTTCAAGAGTTGCCACCACCCAATAATATTTGCAGCAAAGAAGCTTCTAGCCACCTTGATATTGGGAGAACTATTGGTGACCGTCTCTTCCTATATCTTTATGATCAGAAGCGTCATAAGTCCCAAACAGGTATTGCAATTACGATATGGGAGATGTCCAAAAATGGGGTGAATGAATCTTGGACTAGAGTTGTCCAAATTCCTTCTTCTAGTTTATCTAAACAGCATATTTTTGCTTATAGACCGATCACAGTTTTAGAGGATGGTAAATTTTTGATGAATCGGATCAGCAGTAGAAGCAACTGGGAGCAGTTAGTATTGTATGATCCAAAGGAAAACCGTCAAAAGAAATATAGACGCCTTGTTCATGATTATCATTGCATAATTCCCATATTATACCGGGAGACTTTAGTATCGCCGAAACCAGATAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

390

Amino Acids

44.95

Weight (kDa)

6.55

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 83 8e-10 F-box domain
F-box-like PF12937 49 - 85 2.4e-07 F-box-like
FBA_1 PF07734 102 - 337 2.1e-27 F-box associated beta propeller domain
Beta-prop_KIB1-4 PF03478 118 - 312 1.7e-06 KIB1-4 beta-propeller
FBA_3 PF08268 124 - 362 3.1e-21 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 255
AciI CCGC 3 cut(s) 193, 426, 725
AclWI GGATC 4 cut(s) 230, 294, 1028, 1055
AcsI RAATTY 3 cut(s) 734, 933, 1004
AcyI GRCGYC 1 cut(s) 1093
AfiI CCNNNNNNNGG 1 cut(s) 900
AgsI TTSAA 8 cut(s) 92, 271, 589, 614, 632, 661, 696, 740
AhlI ACTAGT 1 cut(s) 530
AluBI AGCT 4 cut(s) 101, 274, 668, 779
AluI AGCT 4 cut(s) 101, 274, 668, 779
Alw21I GWGCWC 1 cut(s) 670
Alw26I GTCTC 2 cut(s) 824, 1133
AlwI GGATC 4 cut(s) 230, 294, 1028, 1055
Ama87I CYCGRG 1 cut(s) 456
AoxI GGCC 1 cut(s) 556
ApeKI GCWGC 2 cut(s) 45, 768
ApoI RAATTY 3 cut(s) 734, 933, 1004
ArsI GACNNNNNNTTYG 2 cut(s) 561, 593
Asp700I GAANNNNTTC 1 cut(s) 11
AsuC2I CCSGG 2 cut(s) 410, 1136
AsuHPI GGTGA 3 cut(s) 440, 824, 916
AsuII TTCGAA 1 cut(s) 312
AvaI CYCGRG 1 cut(s) 456
BaeI ACNNNNGTAYC 2 cut(s) 1131, 1164
BanII GRGCYC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 423
Bbv12I GWGCWC 1 cut(s) 670
BbvI GCAGC 2 cut(s) 32, 780
BccI CCATC 2 cut(s) 122, 992
BceAI ACGGC 1 cut(s) 185
BclI TGATCA 1 cut(s) 838
BcnI CCSGG 2 cut(s) 410, 1136
BcoDI GTCTC 2 cut(s) 824, 1133
BcuI ACTAGT 1 cut(s) 530
BfuAI ACCTGC 1 cut(s) 255
BisI GCNGC 2 cut(s) 46, 769
BlsI GCNGC 2 cut(s) 47, 770
Bme1390I CCNGG 2 cut(s) 410, 1136
BmeT110I CYCGRG 1 cut(s) 456
BmiI GGNNCC 3 cut(s) 254, 388, 446
BmrFI CCNGG 2 cut(s) 410, 1136
BmrI ACTGGG 2 cut(s) 234, 1048
BmuI ACTGGG 2 cut(s) 234, 1048
BpiI GAAGAC 1 cut(s) 423
Bpu14I TTCGAA 1 cut(s) 312
BpuEI CTTGAG 1 cut(s) 299
BpuMI CCSGG 2 cut(s) 410, 1136
BsaHI GRCGYC 1 cut(s) 1093
BsaWI WCCGGW 3 cut(s) 62, 175, 475
Bsc4I CCNNNNNNNGG 1 cut(s) 900
Bse1I ACTGG 3 cut(s) 240, 598, 1043
Bse3DI GCAATG 2 cut(s) 400, 1111
BseGI GGATG 2 cut(s) 133, 1003
BseLI CCNNNNNNNGG 1 cut(s) 900
BseMI GCAATG 2 cut(s) 400, 1111
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 3 cut(s) 240, 598, 1043
BseRI GAGGAG 1 cut(s) 743
BseXI GCAGC 2 cut(s) 32, 780
BseYI CCCAGC 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 337
BshFI GGCC 1 cut(s) 558
BsiEI CGRYCG 1 cut(s) 337
BsiHKAI GWGCWC 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 456
BsiSI CCGG 5 cut(s) 63, 176, 409, 476, 1135
BslFI GGGAC 2 cut(s) 604, 841
BslI CCNNNNNNNGG 1 cut(s) 900
BsmAI GTCTC 2 cut(s) 824, 1133
BsmBI CGTCTC 1 cut(s) 824
BsmFI GGGAC 2 cut(s) 604, 841
BsnI GGCC 1 cut(s) 558
BsoBI CYCGRG 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 312
Bsp1286I GDGCHC 1 cut(s) 670
BspACI CCGC 3 cut(s) 193, 426, 725
BspANI GGCC 1 cut(s) 558
BspCNI CTCAG 1 cut(s) 148
BspHI TCATGA 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 254, 388, 446
BspMI ACCTGC 1 cut(s) 255
BspPI GGATC 4 cut(s) 230, 294, 1028, 1055
BspT104I TTCGAA 1 cut(s) 312
BsrDI GCAATG 2 cut(s) 400, 1111
BsrI ACTGG 3 cut(s) 240, 598, 1043
BssNI GRCGYC 1 cut(s) 1093
Bst4CI ACNGT 6 cut(s) 352, 577, 618, 818, 988, 1076
Bst6I CTCTTC 1 cut(s) 827
BstACI GRCGYC 1 cut(s) 1093
BstBI TTCGAA 1 cut(s) 312
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 812
BstF5I GGATG 2 cut(s) 133, 1003
BstMAI GTCTC 2 cut(s) 824, 1133
BstMCI CGRYCG 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 405, 1032
BstPI GGTNACC 1 cut(s) 812
BstSCI CCNGG 2 cut(s) 408, 1134
BstV1I GCAGC 2 cut(s) 32, 780
BstV2I GAAGAC 1 cut(s) 423
BstX2I RGATCY 1 cut(s) 299
BstXI CCANNNNNNTGG 1 cut(s) 375
BstYI RGATCY 1 cut(s) 299
BsuRI GGCC 1 cut(s) 558
BtsCI GGATG 2 cut(s) 133, 1003
BtsIMutI CAGTG 1 cut(s) 348
BveI ACCTGC 1 cut(s) 255
Cac8I GCNNGC 1 cut(s) 222
CciI TCATGA 1 cut(s) 1102
CseI GACGC 2 cut(s) 836, 1101
CviAII CATG 6 cut(s) 24, 123, 148, 216, 600, 1103
DdeI CTNAG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 827
EarI CTCTTC 1 cut(s) 827
Ecl136II GAGCTC 1 cut(s) 668
Eco147I AGGCCT 1 cut(s) 558
Eco24I GRGCYC 1 cut(s) 670
Eco53kI GAGCTC 1 cut(s) 668
Eco88I CYCGRG 1 cut(s) 456
Eco91I GGTNACC 1 cut(s) 812
EcoICRI GAGCTC 1 cut(s) 668
EcoO65I GGTNACC 1 cut(s) 812
EcoT38I GRGCYC 1 cut(s) 670
Esp3I CGTCTC 1 cut(s) 824
FaeI CATG 6 cut(s) 27, 126, 151, 219, 603, 1106
FaqI GGGAC 2 cut(s) 604, 841
FatI CATG 6 cut(s) 23, 122, 147, 215, 599, 1102
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 838
Fnu4HI GCNGC 2 cut(s) 46, 769
FokI GGATG 2 cut(s) 140, 1010
FriOI GRGCYC 1 cut(s) 670
Fsp4HI GCNGC 2 cut(s) 46, 769
GluI GCNGC 2 cut(s) 46, 769
GsaI CCCAGC 1 cut(s) 52
HaeIII GGCC 1 cut(s) 558
HapII CCGG 5 cut(s) 63, 176, 409, 476, 1135
HgaI GACGC 2 cut(s) 836, 1101
Hin1I GRCGYC 1 cut(s) 1093
Hin1II CATG 6 cut(s) 27, 126, 151, 219, 603, 1106
HindIII AAGCTT 2 cut(s) 272, 777
HinfI GANTC 4 cut(s) 524, 699, 911, 1015
HpaII CCGG 5 cut(s) 63, 176, 409, 476, 1135
HphI GGTGA 3 cut(s) 440, 824, 916
Hpy188I TCNGA 4 cut(s) 568, 704, 843, 1020
Hpy188III TCNNGA 6 cut(s) 278, 359, 458, 696, 740, 1103
Hpy99I CGWCG 2 cut(s) 72, 335
HpyAV CCTTC 5 cut(s) 89, 129, 365, 459, 948
HpyCH4III ACNGT 6 cut(s) 352, 577, 618, 818, 988, 1076
HpyCH4IV ACGT 1 cut(s) 584
HpyCH4V TGCA 6 cut(s) 210, 393, 599, 768, 872, 1116
HpyF10VI GCNNNNNNNGC 2 cut(s) 405, 1032
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 584
Hsp92I GRCGYC 1 cut(s) 1093
Hsp92II CATG 6 cut(s) 27, 126, 151, 219, 603, 1106
Ksp22I TGATCA 1 cut(s) 838
LmnI GCTCC 3 cut(s) 98, 665, 1042
Lsp1109I GCAGC 2 cut(s) 32, 780
MaeII ACGT 1 cut(s) 584
MaeIII GTNAC 3 cut(s) 165, 471, 812
MboII GAAGA 8 cut(s) 4, 104, 425, 428, 548, 616, 814, 933
MflI RGATCY 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 670
MluCI AATT 9 cut(s) 369, 570, 609, 688, 734, 873, 933, 1004, 1119
MnlI CCTC 4 cut(s) 124, 274, 721, 988
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 4 cut(s) 188, 227, 323, 561
MspI CCGG 5 cut(s) 63, 176, 409, 476, 1135
MspR9I CCNGG 2 cut(s) 410, 1136
MwoI GCNNNNNNNGC 2 cut(s) 405, 1032
NciI CCSGG 2 cut(s) 410, 1136
NdeI CATATG 1 cut(s) 79
NlaIII CATG 6 cut(s) 27, 126, 151, 219, 603, 1106
NlaIV GGNNCC 3 cut(s) 254, 388, 446
NmuCI GTSAC 2 cut(s) 165, 812
NspV TTCGAA 1 cut(s) 312
PaeR7I CTCGAG 1 cut(s) 456
PagI TCATGA 1 cut(s) 1102
PceI AGGCCT 1 cut(s) 558
PdmI GAANNNNTTC 1 cut(s) 11
PfeI GAWTC 4 cut(s) 524, 699, 911, 1015
PkrI GCNGC 2 cut(s) 47, 770
Ple19I CGATCG 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 670
PspEI GGTNACC 1 cut(s) 812
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 3 cut(s) 254, 388, 446
PsuI RGATCY 1 cut(s) 299
PvuI CGATCG 1 cut(s) 337
SacI GAGCTC 1 cut(s) 670
SaqAI TTAA 4 cut(s) 188, 227, 323, 561
SatI GCNGC 2 cut(s) 46, 769
ScrFI CCNGG 2 cut(s) 410, 1136
SduI GDGCHC 1 cut(s) 670
SetI ASST 9 cut(s) 103, 269, 276, 587, 630, 670, 781, 792, 868
Sfr274I CTCGAG 1 cut(s) 456
SfuI TTCGAA 1 cut(s) 312
SlaI CTCGAG 1 cut(s) 456
SmlI CTYRAG 2 cut(s) 278, 456
SmoI CTYRAG 2 cut(s) 278, 456
SpeI ACTAGT 1 cut(s) 530
Sse9I AATT 9 cut(s) 369, 570, 609, 688, 734, 873, 933, 1004, 1119
SseBI AGGCCT 1 cut(s) 558
SsiI CCGC 3 cut(s) 193, 426, 725
SspI AATATT 3 cut(s) 321, 636, 763
SstI GAGCTC 1 cut(s) 670
StuI AGGCCT 1 cut(s) 558
StyD4I CCNGG 2 cut(s) 408, 1134
TaaI ACNGT 6 cut(s) 352, 577, 618, 818, 988, 1076
TaiI ACGT 1 cut(s) 587
TaqI TCGA 2 cut(s) 312, 457
TaqII GACCGA 1 cut(s) 994
TasI AATT 9 cut(s) 369, 570, 609, 688, 734, 873, 933, 1004, 1119
TfiI GAWTC 4 cut(s) 524, 699, 911, 1015
Tru1I TTAA 4 cut(s) 188, 227, 323, 561
Tru9I TTAA 4 cut(s) 188, 227, 323, 561
TscAI CASTG 1 cut(s) 355
TseFI GTSAC 2 cut(s) 165, 812
TseI GCWGC 2 cut(s) 45, 768
Tsp45I GTSAC 2 cut(s) 165, 812
TspDTI ATGAA 4 cut(s) 111, 924, 1028, 1091
TspGWI ACGGA 1 cut(s) 678
TspRI CASTG 1 cut(s) 355
XapI RAATTY 3 cut(s) 734, 933, 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 794
XhoI CTCGAG 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.