Rorug02G0430700

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0004848
Physical Location & Seq
Reverse (-)
55251383 .. 55251688
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0430700.1

Sequence Viewer

Length: 306 bp
ATGATGATCTACTTGGGTGATGAAGTTGGTGATTATTGCCCAAGCTTGAAGCTGAGGGAAGGAGATTTTGTGATGCCAAGGAAGAATTTCCCTCTTTTCAATAAGATTTCCCAGAACACTCTAACTCTTAAGGCTGAGATTCAAGGATGGACTGATGGGGAAGAGTTTGAGCACATCTTGCTAAACTTGATCCGCACAATCACCATCGAAGAGAATGCTGCTGCTCAGTTCAATAAGACTGATTGCGTGTTACAGACCACCTCTGTTTTTGGTCATGAGCCCTTCCTTAAAGCTCTCCTAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

4.88

Isoelectric Point (pI)

42.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Put_Phosphatase PF06888 2 - 64 4.3e-21 Putative Phosphatase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 193
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 85
AflII CTTAAG 1 cut(s) 128
AgsI TTSAA 4 cut(s) 49, 100, 143, 232
AluBI AGCT 3 cut(s) 45, 52, 293
AluI AGCT 3 cut(s) 45, 52, 293
Alw21I GWGCWC 1 cut(s) 174
AlwI GGATC 1 cut(s) 184
ApeKI GCWGC 2 cut(s) 218, 221
ApoI RAATTY 1 cut(s) 85
Asp700I GAANNNNTTC 1 cut(s) 86
AsuHPI GGTGA 3 cut(s) 29, 41, 193
BanII GRGCYC 1 cut(s) 282
Bbv12I GWGCWC 1 cut(s) 174
BbvCI CCTCAGC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 205, 208
BccI CCATC 3 cut(s) 141, 149, 212
BcgI CGANNNNNNTGC 2 cut(s) 197, 231
BfaI CTAG 1 cut(s) 299
BfrI CTTAAG 1 cut(s) 128
BisI GCNGC 2 cut(s) 219, 222
BlsI GCNGC 2 cut(s) 220, 223
BmsI GCATC 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
BseDI CCNNGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 152
BseMII CTCAG 3 cut(s) 44, 126, 239
BseXI GCAGC 2 cut(s) 205, 208
BsiHKAI GWGCWC 1 cut(s) 174
BsmI GAATGC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 174, 282
Bsp143I GATC 2 cut(s) 6, 189
BspACI CCGC 1 cut(s) 193
BspCNI CTCAG 3 cut(s) 45, 127, 238
BspHI TCATGA 1 cut(s) 274
BspPI GGATC 1 cut(s) 184
BspTI CTTAAG 1 cut(s) 128
BssECI CCNNGG 1 cut(s) 77
BssMI GATC 2 cut(s) 6, 189
BssT1I CCWWGG 1 cut(s) 77
Bst6I CTCTTC 2 cut(s) 156, 204
BstAFI CTTAAG 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 178
BstDEI CTNAG 3 cut(s) 53, 135, 225
BstF5I GGATG 1 cut(s) 152
BstKTI GATC 2 cut(s) 9, 192
BstMBI GATC 2 cut(s) 6, 189
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstV1I GCAGC 2 cut(s) 205, 208
BtsCI GGATG 1 cut(s) 152
CciI TCATGA 1 cut(s) 274
CviAII CATG 1 cut(s) 275
CviJI RGCY 5 cut(s) 45, 52, 134, 280, 293
CviKI_1 RGCY 5 cut(s) 45, 52, 134, 280, 293
DdeI CTNAG 3 cut(s) 53, 135, 225
DpnI GATC 2 cut(s) 8, 191
DpnII GATC 2 cut(s) 6, 189
Eam1104I CTCTTC 2 cut(s) 156, 204
EarI CTCTTC 2 cut(s) 156, 204
Eco130I CCWWGG 1 cut(s) 77
Eco24I GRGCYC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 77
FaeI CATG 1 cut(s) 278
FaiI YATR 1 cut(s) 276
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 219, 222
FokI GGATG 1 cut(s) 159
FriOI GRGCYC 1 cut(s) 282
Fsp4HI GCNGC 2 cut(s) 219, 222
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 219, 222
Hin1II CATG 1 cut(s) 278
HindIII AAGCTT 1 cut(s) 43
HinfI GANTC 1 cut(s) 139
HphI GGTGA 3 cut(s) 29, 41, 193
Hpy188III TCNNGA 1 cut(s) 275
HpyAV CCTTC 2 cut(s) 53, 292
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 3 cut(s) 53, 135, 225
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 2 cut(s) 6, 189
LpnPI CCDG 1 cut(s) 125
Lsp1109I GCAGC 2 cut(s) 205, 208
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 249
MalI GATC 2 cut(s) 8, 191
MboI GATC 2 cut(s) 6, 189
MboII GAAGA 3 cut(s) 94, 173, 221
MhlI GDGCHC 2 cut(s) 174, 282
MluCI AATT 1 cut(s) 85
MnlI CCTC 3 cut(s) 48, 102, 271
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 2 cut(s) 129, 288
MspCI CTTAAG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 220
MwoI GCNNNNNNNGC 1 cut(s) 178
NdeII GATC 2 cut(s) 6, 189
NlaIII CATG 1 cut(s) 278
PagI TCATGA 1 cut(s) 274
PctI GAATGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 86
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 2 cut(s) 220, 223
SaqAI TTAA 2 cut(s) 129, 288
SatI GCNGC 2 cut(s) 219, 222
Sau3AI GATC 2 cut(s) 6, 189
SduI GDGCHC 2 cut(s) 174, 282
SetI ASST 4 cut(s) 47, 54, 263, 295
SfaNI GCATC 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 128
SmoI CTYRAG 1 cut(s) 128
Sse9I AATT 1 cut(s) 85
SsiI CCGC 1 cut(s) 193
SspMI CTAG 1 cut(s) 299
StyI CCWWGG 1 cut(s) 77
TaqI TCGA 1 cut(s) 207
TasI AATT 1 cut(s) 85
TfiI GAWTC 1 cut(s) 139
Tru1I TTAA 2 cut(s) 129, 288
Tru9I TTAA 2 cut(s) 129, 288
TseI GCWGC 2 cut(s) 218, 221
TspDTI ATGAA 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 128
XapI RAATTY 1 cut(s) 85
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 299
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.