Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038336.1

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1313

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038336.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 766 bp

tcttgagacagtcaatcccaccagatccatagacttcgaagcaatattaaaggatgacgatcgggtgggatataccgtccttccagaagcaccaagattatgggttctgggttcctgcaatggcttgatatgccgggaagaagacgagggaggtgatcttatcttatggaacccttctactcgagatacatgcaagttaccggaacaaattaaaactagaaatcgtcagttttttggatttggttatgattccaccaatcaagattacaaggtcatagtaggccttgaaaccgaaattacagtctttacattaaaaaccggctcatggaagattgttgaacagtccgagtatgttggaaggttttgtggggaggggtgcttattgaacggagctctacattggctagatgacagtcggtcaaaattcacaataatctcttttgatctggtggaggagaaatttcaggagttgccaccacccaatatttggaggaaaggagtctcccttggtattgggaaaactattggcaactgtctcttcctatatctttatgattacaagcgtcatacatcccaaacaggtattgcattaacaatatgggtgctgaacgaatatggggtgaatgaatcttggactagcgttgttcaaattccttcttctagtctatctccatgtcatatttttgattatgaaccgattttggttttagaggatgataaagttttgatgaatcggatcagcaatagaagcgagtggaaccaattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

255

Amino Acids

29.17

Weight (kDa)

4.83

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	487
AclWI	GGATC	2 cut(s)	19, 744
AcsI	RAATTY	3 cut(s)	423, 459, 649
AfiI	CCNNNNNNNGG	2 cut(s)	325, 487
AgsI	TTSAA	4 cut(s)	288, 339, 386, 648
AhdI	GACNNNNNGTC	1 cut(s)	416
AluBI	AGCT	1 cut(s)	393
AluI	AGCT	1 cut(s)	393
Alw21I	GWGCWC	1 cut(s)	395
Alw26I	GTCTC	2 cut(s)	506, 540
AlwI	GGATC	2 cut(s)	19, 744
Ama87I	CYCGRG	1 cut(s)	181
AoxI	GGCC	1 cut(s)	281
ApoI	RAATTY	3 cut(s)	423, 459, 649
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AsuC2I	CCSGG	1 cut(s)	135
AsuHPI	GGTGA	2 cut(s)	165, 632
AsuII	TTCGAA	1 cut(s)	37
AvaI	CYCGRG	1 cut(s)	181
BanII	GRGCYC	1 cut(s)	395
BbsI	GAAGAC	1 cut(s)	148
Bbv12I	GWGCWC	1 cut(s)	395
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcnI	CCSGG	1 cut(s)	135
BcoDI	GTCTC	2 cut(s)	506, 540
BfaI	CTAG	4 cut(s)	217, 405, 637, 661
Bme1390I	CCNGG	1 cut(s)	135
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	181
BmiI	GGNNCC	3 cut(s)	113, 171, 759
BmrFI	CCNGG	1 cut(s)	135
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	37
BpuEI	CTTGAG	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	135
BsaBI	GATNNNNATC	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	506
BsaWI	WCCGGW	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	325, 487
Bse118I	RCCGGY	1 cut(s)	318
Bse3DI	GCAATG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	58
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	3 cut(s)	59, 570, 719
BseJI	GATNNNNATC	1 cut(s)	58
BseLI	CCNNNNNNNGG	2 cut(s)	325, 487
BseMI	GCAATG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	468
Bsh1285I	CGRYCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	62
BsiHKAI	GWGCWC	1 cut(s)	395
BsiHKCI	CYCGRG	1 cut(s)	181
BsiSI	CCGG	3 cut(s)	134, 201, 319
BslI	CCNNNNNNNGG	2 cut(s)	325, 487
BsmAI	GTCTC	2 cut(s)	506, 540
BsnI	GGCC	1 cut(s)	283
BsoBI	CYCGRG	1 cut(s)	181
Bsp119I	TTCGAA	1 cut(s)	37
Bsp1286I	GDGCHC	1 cut(s)	395
Bsp143I	GATC	5 cut(s)	24, 59, 155, 443, 736
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	113, 171, 759
BspPI	GGATC	2 cut(s)	19, 744
BspT104I	TTCGAA	1 cut(s)	37
BsrDI	GCAATG	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	318
BssAI	RCCGGY	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	5 cut(s)	24, 59, 155, 443, 736
BssT1I	CCWWGG	1 cut(s)	506
Bst4CI	ACNGT	6 cut(s)	11, 77, 302, 343, 414, 534
Bst6I	CTCTTC	1 cut(s)	543
BstBI	TTCGAA	1 cut(s)	37
BstF5I	GGATG	3 cut(s)	59, 570, 719
BstKTI	GATC	5 cut(s)	27, 62, 158, 446, 739
BstMAI	GTCTC	2 cut(s)	506, 540
BstMBI	GATC	5 cut(s)	24, 59, 155, 443, 736
BstMCI	CGRYCG	1 cut(s)	62
BstMWI	GCNNNNNNNGC	2 cut(s)	130, 748
BstNSI	RCATGY	1 cut(s)	193
BstSCI	CCNGG	1 cut(s)	133
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	24
BstXI	CCANNNNNNTGG	1 cut(s)	100
BstYI	RGATCY	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	59, 570, 719
Cfr10I	RCCGGY	1 cut(s)	318
CseI	GACGC	1 cut(s)	552
CviAII	CATG	3 cut(s)	190, 325, 673
CviJI	RGCY	5 cut(s)	124, 283, 322, 393, 404
CviKI_1	RGCY	5 cut(s)	124, 283, 322, 393, 404
DpnI	GATC	5 cut(s)	26, 61, 157, 445, 738
DpnII	GATC	5 cut(s)	24, 59, 155, 443, 736
DriI	GACNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	543
Ecl136II	GAGCTC	1 cut(s)	393
Eco130I	CCWWGG	1 cut(s)	506
Eco147I	AGGCCT	1 cut(s)	283
Eco24I	GRGCYC	1 cut(s)	395
Eco53kI	GAGCTC	1 cut(s)	393
Eco88I	CYCGRG	1 cut(s)	181
EcoICRI	GAGCTC	1 cut(s)	393
EcoT14I	CCWWGG	1 cut(s)	506
EcoT38I	GRGCYC	1 cut(s)	395
ErhI	CCWWGG	1 cut(s)	506
FaeI	CATG	3 cut(s)	193, 328, 676
FatI	CATG	3 cut(s)	189, 324, 672
FokI	GGATG	3 cut(s)	66, 557, 726
FriOI	GRGCYC	1 cut(s)	395
FspBI	CTAG	4 cut(s)	217, 405, 637, 661
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	3 cut(s)	134, 201, 319
HgaI	GACGC	1 cut(s)	552
Hin1II	CATG	3 cut(s)	193, 328, 676
HinfI	GANTC	4 cut(s)	249, 499, 627, 731
HpaII	CCGG	3 cut(s)	134, 201, 319
HphI	GGTGA	2 cut(s)	165, 632
Hpy188I	TCNGA	2 cut(s)	347, 736
Hpy188III	TCNNGA	5 cut(s)	3, 84, 183, 261, 465
HpyAV	CCTTC	4 cut(s)	90, 184, 352, 664
HpyCH4III	ACNGT	6 cut(s)	11, 77, 302, 343, 414, 534
HpyCH4V	TGCA	3 cut(s)	118, 193, 588
HpyF10VI	GCNNNNNNNGC	2 cut(s)	130, 748
Hsp92II	CATG	3 cut(s)	193, 328, 676
Kzo9I	GATC	5 cut(s)	24, 59, 155, 443, 736
LmnI	GCTCC	1 cut(s)	390
MaeI	CTAG	4 cut(s)	217, 405, 637, 661
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	5 cut(s)	26, 61, 157, 445, 738
MboI	GATC	5 cut(s)	24, 59, 155, 443, 736
MboII	GAAGA	5 cut(s)	150, 153, 341, 530, 649
MfeI	CAATTG	1 cut(s)	762
MflI	RGATCY	1 cut(s)	24
MhlI	GDGCHC	1 cut(s)	395
MluCI	AATT	6 cut(s)	208, 295, 423, 459, 649, 762
MlyI	GAGTC	1 cut(s)	508
MmeI	TCCRAC	1 cut(s)	335
MnlI	CCTC	6 cut(s)	140, 144, 365, 446, 484, 704
MseI	TTAA	4 cut(s)	48, 211, 312, 591
MspI	CCGG	3 cut(s)	134, 201, 319
MspR9I	CCNGG	1 cut(s)	135
MunI	CAATTG	1 cut(s)	762
MwoI	GCNNNNNNNGC	2 cut(s)	130, 748
NciI	CCSGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	24, 59, 155, 443, 736
NlaIII	CATG	3 cut(s)	193, 328, 676
NlaIV	GGNNCC	3 cut(s)	113, 171, 759
NspI	RCATGY	1 cut(s)	193
NspV	TTCGAA	1 cut(s)	37
PaeR7I	CTCGAG	1 cut(s)	181
PceI	AGGCCT	1 cut(s)	283
PfeI	GAWTC	3 cut(s)	249, 627, 731
PflMI	CCANNNNNTGG	1 cut(s)	487
Ple19I	CGATCG	1 cut(s)	62
PleI	GAGTC	1 cut(s)	507
PpsI	GAGTC	1 cut(s)	507
Psp124BI	GAGCTC	1 cut(s)	395
PspN4I	GGNNCC	3 cut(s)	113, 171, 759
PsuI	RGATCY	1 cut(s)	24
PvuI	CGATCG	1 cut(s)	62
SacI	GAGCTC	1 cut(s)	395
SaqAI	TTAA	4 cut(s)	48, 211, 312, 591
Sau3AI	GATC	5 cut(s)	24, 59, 155, 443, 736
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	1 cut(s)	135
SduI	GDGCHC	1 cut(s)	395
SetI	ASST	5 cut(s)	155, 274, 363, 395, 584
Sfr274I	CTCGAG	1 cut(s)	181
SfuI	TTCGAA	1 cut(s)	37
SlaI	CTCGAG	1 cut(s)	181
SmlI	CTYRAG	2 cut(s)	3, 181
SmoI	CTYRAG	2 cut(s)	3, 181
Sse9I	AATT	6 cut(s)	208, 295, 423, 459, 649, 762
SseBI	AGGCCT	1 cut(s)	283
SspI	AATATT	2 cut(s)	46, 485
SspMI	CTAG	4 cut(s)	217, 405, 637, 661
SstI	GAGCTC	1 cut(s)	395
StuI	AGGCCT	1 cut(s)	283
StyD4I	CCNGG	1 cut(s)	133
StyI	CCWWGG	1 cut(s)	506
TaaI	ACNGT	6 cut(s)	11, 77, 302, 343, 414, 534
TaqI	TCGA	2 cut(s)	37, 182
TaqII	GACCGA	1 cut(s)	406
TasI	AATT	6 cut(s)	208, 295, 423, 459, 649, 762
TfiI	GAWTC	3 cut(s)	249, 627, 731
Tru1I	TTAA	4 cut(s)	48, 211, 312, 591
Tru9I	TTAA	4 cut(s)	48, 211, 312, 591
TspDTI	ATGAA	3 cut(s)	640, 706, 744
TspGWI	ACGGA	1 cut(s)	403
Van91I	CCANNNNNTGG	1 cut(s)	487
XapI	RAATTY	3 cut(s)	423, 459, 649
XceI	RCATGY	1 cut(s)	193
XcmI	CCANNNNNNNNNTGG	1 cut(s)	484
XhoI	CTCGAG	1 cut(s)	181
XspI	CTAG	4 cut(s)	217, 405, 637, 661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.