Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

72724538 .. 72724881

Gene Structure 344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0610800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGTTTAGGCCTTTGGGAATTGCCATTGCTGCAGTGATGGTAGTCATCTTCCTCGGCGATTCACTTCACCTTGGCAGTGTGATTGGATCTATCATTATAGCAATTGGGTTCTATGCTGTGATGTGGGCACAGATCAAAGAAAAGAGCACTACTCTCATGCAGAGTGATGTCCAAAGCTTGGCATCATCCACCCAAAAGACCCCACTCTTGCAATGCAGAACCACCGGAGAAGATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

79

Amino Acids

8.47

Weight (kDa)

6.52

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	178
AclWI	GGATC	1 cut(s)	94
AfiI	CCNNNNNNNGG	1 cut(s)	178
AluBI	AGCT	1 cut(s)	177
AluI	AGCT	1 cut(s)	177
Alw21I	GWGCWC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	94
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	29
AsuHPI	GGTGA	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	31
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	1 cut(s)	30
BlsI	GCNGC	1 cut(s)	31
BmsI	GCATC	1 cut(s)	191
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BsaJI	CCNNGG	2 cut(s)	52, 70
BsaWI	WCCGGW	1 cut(s)	224
BsaXI	ACNNNNNCTCC	1 cut(s)	219
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse3DI	GCAATG	2 cut(s)	24, 218
BseDI	CCNNGG	2 cut(s)	52, 70
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMI	GCAATG	2 cut(s)	24, 218
BseSI	GKGCMC	1 cut(s)	130
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	149
BsiSI	CCGG	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	178
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	130, 149
Bsp143I	GATC	2 cut(s)	86, 132
BspANI	GGCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	34
BspPI	GGATC	1 cut(s)	94
BsrDI	GCAATG	2 cut(s)	24, 218
BssECI	CCNNGG	2 cut(s)	52, 70
BssMI	GATC	2 cut(s)	86, 132
BssT1I	CCWWGG	1 cut(s)	70
BstF5I	GGATG	1 cut(s)	185
BstKTI	GATC	2 cut(s)	89, 135
BstMBI	GATC	2 cut(s)	86, 132
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	130
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	86
BstYI	RGATCY	1 cut(s)	86
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	185
BtsI	GCAGTG	2 cut(s)	39, 82
BtsIMutI	CAGTG	2 cut(s)	39, 82
CviAII	CATG	1 cut(s)	157
CviJI	RGCY	2 cut(s)	10, 177
CviKI_1	RGCY	2 cut(s)	10, 177
DpnI	GATC	2 cut(s)	88, 134
DpnII	GATC	2 cut(s)	86, 132
Eco130I	CCWWGG	1 cut(s)	70
Eco147I	AGGCCT	1 cut(s)	10
EcoT14I	CCWWGG	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	160
FaiI	YATR	4 cut(s)	98, 114, 158, 238
FatI	CATG	1 cut(s)	156
Fnu4HI	GCNGC	1 cut(s)	30
FokI	GGATG	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	225
Hin1II	CATG	1 cut(s)	160
HindIII	AAGCTT	1 cut(s)	175
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	1 cut(s)	225
HphI	GGTGA	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	32, 160, 211, 216
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
Hsp92II	CATG	1 cut(s)	160
Kzo9I	GATC	2 cut(s)	86, 132
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	191
MalI	GATC	2 cut(s)	88, 134
MboI	GATC	2 cut(s)	86, 132
MboII	GAAGA	1 cut(s)	40
MfeI	CAATTG	1 cut(s)	102
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	130, 149
MluCI	AATT	2 cut(s)	18, 102
MnlI	CCTC	1 cut(s)	62
MspI	CCGG	1 cut(s)	225
MunI	CAATTG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	86, 132
NlaIII	CATG	1 cut(s)	160
NmeAIII	GCCGAG	1 cut(s)	33
PceI	AGGCCT	1 cut(s)	10
PfeI	GAWTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	178
PkrI	GCNGC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	34
PsuI	RGATCY	1 cut(s)	86
SatI	GCNGC	1 cut(s)	30
Sau3AI	GATC	2 cut(s)	86, 132
SduI	GDGCHC	2 cut(s)	130, 149
SetI	ASST	2 cut(s)	72, 179
SfaNI	GCATC	1 cut(s)	191
SfcI	CTRYAG	1 cut(s)	30
SgeI	CNNG	5 cut(s)	65, 83, 169, 190, 220
Sse9I	AATT	2 cut(s)	18, 102
SseBI	AGGCCT	1 cut(s)	10
StuI	AGGCCT	1 cut(s)	10
StyI	CCWWGG	1 cut(s)	70
TasI	AATT	2 cut(s)	18, 102
TfiI	GAWTC	1 cut(s)	59
TscAI	CASTG	2 cut(s)	39, 82
TseI	GCWGC	1 cut(s)	29
TspRI	CASTG	2 cut(s)	39, 82
Van91I	CCANNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.