Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005354.1

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

34530 .. 35429

Gene Structure 900 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005354.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atggggaatatcatcttcatctctttatcatgctatggcgttctttcccgctgctgggattccatcactagacgagcgacatatgtagggcttgaaagagctttgagcaacccctctccctcatgggatggtcgttttgacgatgacctaattgctgagatactgtcgcggcttccagtcaaatctttacacatcagcacatacaccagcaggttgaaacttcttgagacagtcaatcccaccagatccatagactttgaagcaatattaaaggatgacgatcaggtgggatataccgtcctaccagaagcaccaagattatgggttttgggttcctgcaatggcttgatatgccaggaagaagacgagagaggtgatcttatcttatggaacccgtctactcgagatacatacaagttaccggaacaaattaaaactagatatcgtcagttttttggatttggttatgattccaccaatgaagattacaaggtcatagtaggccttgaaaccgaaattacagtctttacattaaaaaccggttcatggaagattgttgaacagtccgagtacgttggaaggttttatggggaggggtgcttattgaacggagctctgcattggctagaggactgtcggtcaaaattcccaataatctcttttgatatggaggaggagaaatttcaggagttgccaccacccaatatttgcaggaaagaagtttctggccgccttggtattgggaaaactattggcaactgtctcttcctatatctttatggttccaagcgtcatacgtgccaaacaggtattgcatttacaatatgttgctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

277

Amino Acids

31.61

Weight (kDa)

5.29

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	201
AccI	GTMKAC	1 cut(s)	398
AccII	CGCG	1 cut(s)	169
AciI	CCGC	3 cut(s)	49, 169, 730
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	727
AcsI	RAATTY	2 cut(s)	644, 680
AfaI	GTAC	1 cut(s)	572
AfiI	CCNNNNNNNGG	3 cut(s)	54, 55, 546
AgeI	ACCGGT	1 cut(s)	539
AgsI	TTSAA	6 cut(s)	95, 217, 260, 509, 560, 607
AhdI	GACNNNNNGTC	1 cut(s)	637
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	101, 614
AluI	AGCT	2 cut(s)	101, 614
Alw21I	GWGCWC	1 cut(s)	616
Alw26I	GTCTC	2 cut(s)	221, 767
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	402
AoxI	GGCC	2 cut(s)	502, 727
ApeKI	GCWGC	1 cut(s)	51
ApoI	RAATTY	2 cut(s)	644, 680
ArsI	GACNNNNNNTTYG	2 cut(s)	507, 539
AsiGI	ACCGGT	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	386
AvaI	CYCGRG	1 cut(s)	402
BanII	GRGCYC	1 cut(s)	616
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	616
BbvI	GCAGC	1 cut(s)	38
BccI	CCATC	2 cut(s)	71, 122
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	2 cut(s)	221, 767
BfaI	CTAG	3 cut(s)	69, 438, 626
BfuAI	ACCTGC	1 cut(s)	201
BisI	GCNGC	3 cut(s)	52, 170, 730
BlsI	GCNGC	3 cut(s)	53, 171, 731
Bme1390I	CCNGG	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	637
BmeT110I	CYCGRG	1 cut(s)	402
BmiI	GGNNCC	3 cut(s)	334, 392, 784
BmrFI	CCNGG	1 cut(s)	356
BpiI	GAAGAC	1 cut(s)	369
BpuEI	CTTGAG	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	733
BsaWI	WCCGGW	2 cut(s)	421, 539
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 55, 546
Bse118I	RCCGGY	1 cut(s)	539
Bse1I	ACTGG	1 cut(s)	176
Bse3DI	GCAATG	1 cut(s)	346
Bse8I	GATNNNNATC	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	733
BseGI	GGATG	2 cut(s)	133, 280
BseJI	GATNNNNATC	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	54, 55, 546
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	2 cut(s)	686, 689
BseXI	GCAGC	1 cut(s)	38
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	169
BshFI	GGCC	2 cut(s)	504, 729
BshTI	ACCGGT	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	616
BsiHKCI	CYCGRG	1 cut(s)	402
BsiSI	CCGG	2 cut(s)	422, 540
BslI	CCNNNNNNNGG	3 cut(s)	54, 55, 546
BsmAI	GTCTC	2 cut(s)	221, 767
BsnI	GGCC	2 cut(s)	504, 729
BsoBI	CYCGRG	1 cut(s)	402
Bsp1286I	GDGCHC	1 cut(s)	616
Bsp143I	GATC	3 cut(s)	245, 280, 376
BspACI	CCGC	3 cut(s)	49, 169, 730
BspANI	GGCC	2 cut(s)	504, 729
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	169
BspLI	GGNNCC	3 cut(s)	334, 392, 784
BspMI	ACCTGC	1 cut(s)	201
BspPI	GGATC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	346
BsrFI	RCCGGY	1 cut(s)	539
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	539
BssECI	CCNNGG	1 cut(s)	733
BssMI	GATC	3 cut(s)	245, 280, 376
BssT1I	CCWWGG	1 cut(s)	733
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	7 cut(s)	165, 232, 298, 523, 564, 635, 761
Bst6I	CTCTTC	1 cut(s)	770
BstBAI	YACGTR	1 cut(s)	798
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	2 cut(s)	133, 280
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	3 cut(s)	248, 283, 379
BstMAI	GTCTC	2 cut(s)	221, 767
BstMBI	GATC	3 cut(s)	245, 280, 376
BstMWI	GCNNNNNNNGC	1 cut(s)	351
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstUI	CGCG	1 cut(s)	169
BstV1I	GCAGC	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	369
BstX2I	RGATCY	1 cut(s)	245
BstXI	CCANNNNNNTGG	1 cut(s)	321
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	2 cut(s)	504, 729
BtsCI	GGATG	2 cut(s)	133, 280
BveI	ACCTGC	1 cut(s)	201
Cfr10I	RCCGGY	1 cut(s)	539
CseI	GACGC	1 cut(s)	779
Csp6I	GTAC	1 cut(s)	571
CspAI	ACCGGT	1 cut(s)	539
CviAII	CATG	3 cut(s)	30, 123, 546
CviJI	RGCY	8 cut(s)	91, 101, 172, 345, 504, 614, 625, 729
CviKI_1	RGCY	8 cut(s)	91, 101, 172, 345, 504, 614, 625, 729
CviQI	GTAC	1 cut(s)	571
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	247, 282, 378
DpnII	GATC	3 cut(s)	245, 280, 376
DriI	GACNNNNNGTC	1 cut(s)	637
EaeI	YGGCCR	1 cut(s)	727
Eam1104I	CTCTTC	1 cut(s)	770
Eam1105I	GACNNNNNGTC	1 cut(s)	637
EarI	CTCTTC	1 cut(s)	770
Ecl136II	GAGCTC	1 cut(s)	614
Eco130I	CCWWGG	1 cut(s)	733
Eco147I	AGGCCT	1 cut(s)	504
Eco24I	GRGCYC	1 cut(s)	616
Eco32I	GATATC	1 cut(s)	443
Eco53kI	GAGCTC	1 cut(s)	614
Eco88I	CYCGRG	1 cut(s)	402
EcoICRI	GAGCTC	1 cut(s)	614
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	443
EcoT14I	CCWWGG	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	733
FaeI	CATG	3 cut(s)	33, 126, 549
FatI	CATG	3 cut(s)	29, 122, 545
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	398
Fnu4HI	GCNGC	3 cut(s)	52, 170, 730
FokI	GGATG	2 cut(s)	140, 287
FriOI	GRGCYC	1 cut(s)	616
Fsp4HI	GCNGC	3 cut(s)	52, 170, 730
FspBI	CTAG	3 cut(s)	69, 438, 626
GluI	GCNGC	3 cut(s)	52, 170, 730
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	504, 729
HapII	CCGG	2 cut(s)	422, 540
HgaI	GACGC	1 cut(s)	779
Hin1II	CATG	3 cut(s)	33, 126, 549
HinfI	GANTC	2 cut(s)	59, 470
HpaII	CCGG	2 cut(s)	422, 540
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	399
Hpy188I	TCNGA	1 cut(s)	568
Hpy188III	TCNNGA	3 cut(s)	224, 404, 686
Hpy8I	GTNNAC	1 cut(s)	399
HpyAV	CCTTC	1 cut(s)	573
HpyCH4III	ACNGT	7 cut(s)	165, 232, 298, 523, 564, 635, 761
HpyCH4IV	ACGT	2 cut(s)	573, 797
HpyCH4V	TGCA	4 cut(s)	339, 619, 711, 815
HpyF10VI	GCNNNNNNNGC	1 cut(s)	351
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	2 cut(s)	573, 797
Hsp92II	CATG	3 cut(s)	33, 126, 549
Kzo9I	GATC	3 cut(s)	245, 280, 376
LmnI	GCTCC	1 cut(s)	611
Lsp1109I	GCAGC	1 cut(s)	38
MaeI	CTAG	3 cut(s)	69, 438, 626
MaeII	ACGT	2 cut(s)	573, 797
MaeIII	GTNAC	1 cut(s)	417
MalI	GATC	3 cut(s)	247, 282, 378
MboI	GATC	3 cut(s)	245, 280, 376
MboII	GAAGA	6 cut(s)	7, 371, 374, 494, 562, 757
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	1 cut(s)	616
MluCI	AATT	5 cut(s)	150, 429, 516, 644, 680
MmeI	TCCRAC	1 cut(s)	556
MnlI	CCTC	7 cut(s)	124, 130, 365, 586, 622, 664, 667
MseI	TTAA	3 cut(s)	269, 432, 533
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	2 cut(s)	422, 540
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	351
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	3 cut(s)	245, 280, 376
NlaIII	CATG	3 cut(s)	33, 126, 549
NlaIV	GGNNCC	3 cut(s)	334, 392, 784
PaeR7I	CTCGAG	1 cut(s)	402
PceI	AGGCCT	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	59, 470
PinAI	ACCGGT	1 cut(s)	539
PkrI	GCNGC	3 cut(s)	53, 171, 731
Ppu21I	YACGTR	1 cut(s)	798
Psp124BI	GAGCTC	1 cut(s)	616
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	334, 392, 784
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	572
RsaNI	GTAC	1 cut(s)	571
SacI	GAGCTC	1 cut(s)	616
SaqAI	TTAA	3 cut(s)	269, 432, 533
SatI	GCNGC	3 cut(s)	52, 170, 730
Sau3AI	GATC	3 cut(s)	245, 280, 376
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	616
Sfr274I	CTCGAG	1 cut(s)	402
SlaI	CTCGAG	1 cut(s)	402
SmlI	CTYRAG	2 cut(s)	224, 402
SmoI	CTYRAG	2 cut(s)	224, 402
Sse9I	AATT	5 cut(s)	150, 429, 516, 644, 680
SseBI	AGGCCT	1 cut(s)	504
SsiI	CCGC	3 cut(s)	49, 169, 730
SspI	AATATT	2 cut(s)	267, 706
SspMI	CTAG	3 cut(s)	69, 438, 626
SstI	GAGCTC	1 cut(s)	616
StuI	AGGCCT	1 cut(s)	504
StyD4I	CCNGG	1 cut(s)	354
StyI	CCWWGG	1 cut(s)	733
TaaI	ACNGT	7 cut(s)	165, 232, 298, 523, 564, 635, 761
TaiI	ACGT	2 cut(s)	576, 800
TaqI	TCGA	1 cut(s)	403
TaqII	GACCGA	1 cut(s)	627
TasI	AATT	5 cut(s)	150, 429, 516, 644, 680
TauI	GCSGC	2 cut(s)	172, 732
TfiI	GAWTC	2 cut(s)	59, 470
Tru1I	TTAA	3 cut(s)	269, 432, 533
Tru9I	TTAA	3 cut(s)	269, 432, 533
TseI	GCWGC	1 cut(s)	51
TspDTI	ATGAA	3 cut(s)	7, 495, 534
TspGWI	ACGGA	1 cut(s)	624
XapI	RAATTY	2 cut(s)	644, 680
XhoI	CTCGAG	1 cut(s)	402
XmiI	GTMKAC	1 cut(s)	398
XspI	CTAG	3 cut(s)	69, 438, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.