Rmu_sc0005969.1_g000041

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005969.1
Physical Location & Seq
Reverse (-)
154185 .. 155627
1443 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005969.1_g000041.1.cds

Sequence Viewer

Length: 1443 bp
atggcaaaggagcttgaacacacatccaatgtagggcttgaaggagctttgagcagtccctctccctcatgggctggtggttttgacgatgagctaattgcctatgagatactgtcgcggcttccggtcaaatctttagtacggtttcgttgtgtatgcaagtcgtggcttgctctaacctctgatcccaaatttgctagggagcacgccagcagggccggcagcaggttgaagctgcttgagacagtcaatcccaccagatccatagaattcagagcaatattggacgatgatgatcgggtggattatgccgtcctaccagaagtgccaagtttatgtgtcctgggttcctgcaatggcttgatatgccgggaagaagtcagcttgatttgccaagaagaagttgacgacgggttgatattgcaacaagacgaggaagaagtggagggagaggaagagaaagaggaaaacgaagacgaggaggaagaagaggagaaagaggaaaaggaaaacgaagaagaggaagaagaggaagagaacgatgatgatcgtgatcttatcatatggaatccttctactcaagatacatacaagttacccaaaatcaaaataatttgtcgccgcgatcgcgacttttatggatttggttatgattccaccaatgaagattacaaggttataataggccttaacaacagtgaaagtggaagtgactgggaaagtggaagtgactgggaaactgaaagtaactgggaaactgaaattagggcttccaatctcccaacagccacacttgcagtctttacatcaaaaacaggttcatggaagatagttcaaaatctcaacaacgttggagagtgctatgggccggggcgcttattgaatggagctctacattggctagagcacagcttttcaagactcacaatcatctcttttgatctagccgaggaaaaatttcaaagtttattgtcaccacccgatatttgcacgacagaaagaaccatcgacgttgggattgggatgactattgggaattcactcttcctatatgtttacgattgggggcgtcatgaattgcaaacaggtatggcgataacaatatgggtgatgaaagaatatggggttaatgaatcctggactagaactgttcagattccttctttaagtttatctccgcatcttgagttccgttacagaccgattttgattttagaaaatggtaaagttttgatgaagcggatcagccatagcaccctgacttggattttagagaatggtaaaaaagtttcgaagatgagcagcgagaggaggcagctggtgttgtatgatcctgaggaaaacagtcaaaaggaatatagacgtcttcttcatgactatgactatcgcaactcgcccgtattatacctggagactttagtgtcaccagatatcggtagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

480

Amino Acids

55.01

Weight (kDa)

4.53

Isoelectric Point (pI)

54.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 680
AasI GACNNNNNNGTC 1 cut(s) 1420
AatII GACGTC 1 cut(s) 1366
Acc36I ACCTGC 1 cut(s) 216
AccII CGCG 3 cut(s) 118, 624, 630
AciI CCGC 4 cut(s) 118, 622, 1178, 1240
AclI AACGTT 1 cut(s) 849
AclWI GGATC 4 cut(s) 179, 255, 1250, 1325
AcsI RAATTY 4 cut(s) 191, 269, 956, 1036
AcyI GRCGYC 2 cut(s) 1069, 1363
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 33, 225, 1263, 1433
AgsI TTSAA 7 cut(s) 17, 41, 232, 836, 883, 918, 962
AjnI CCWGG 3 cut(s) 342, 1136, 1407
AluBI AGCT 9 cut(s) 13, 47, 94, 235, 384, 890, 912, 1318, 1440
AluI AGCT 9 cut(s) 13, 47, 94, 235, 384, 890, 912, 1318, 1440
Alw21I GWGCWC 3 cut(s) 207, 892, 909
Alw26I GTCTC 2 cut(s) 236, 1406
AlwI GGATC 4 cut(s) 179, 255, 1250, 1325
AoxI GGCC 3 cut(s) 216, 685, 866
ApeKI GCWGC 4 cut(s) 222, 235, 1302, 1315
ApoI RAATTY 4 cut(s) 191, 269, 956, 1036
AsiSI GCGATCGC 1 cut(s) 628
Asp700I GAANNNNTTC 1 cut(s) 957
AspLEI GCGC 1 cut(s) 876
AspS9I GGNCC 2 cut(s) 216, 866
AsuC2I CCSGG 2 cut(s) 371, 870
AsuHPI GGTGA 3 cut(s) 966, 1120, 1416
AsuII TTCGAA 1 cut(s) 1292
AxyI CCTNAGG 1 cut(s) 1335
BanII GRGCYC 1 cut(s) 892
BbsI GAAGAC 2 cut(s) 480, 1358
Bbv12I GWGCWC 3 cut(s) 207, 892, 909
BbvI GCAGC 4 cut(s) 222, 234, 1314, 1327
BccI CCATC 1 cut(s) 1013
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 3 cut(s) 344, 1138, 1409
BcnI CCSGG 2 cut(s) 371, 870
BcoDI GTCTC 2 cut(s) 236, 1406
BfaI CTAG 5 cut(s) 198, 902, 944, 1143, 1441
BfoI RGCGCY 1 cut(s) 877
BfuAI ACCTGC 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 6 cut(s) 119, 223, 236, 622, 1303, 1316
BlsI GCNGC 6 cut(s) 120, 224, 237, 623, 1304, 1317
Bme1390I CCNGG 5 cut(s) 344, 371, 870, 1138, 1409
BmgT120I GGNCC 2 cut(s) 216, 866
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 5 cut(s) 344, 371, 870, 1138, 1409
BmrI ACTGGG 3 cut(s) 724, 742, 760
BmsI GCATC 1 cut(s) 1189
BmuI ACTGGG 3 cut(s) 724, 742, 760
BpiI GAAGAC 2 cut(s) 480, 1358
BpmI CTGGAG 1 cut(s) 1430
Bpu14I TTCGAA 1 cut(s) 1292
BpuEI CTTGAG 3 cut(s) 260, 564, 1205
BpuMI CCSGG 2 cut(s) 371, 870
BsaBI GATNNNNATC 3 cut(s) 294, 546, 552
BsaHI GRCGYC 2 cut(s) 1069, 1363
BsaJI CCNNGG 3 cut(s) 343, 869, 948
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 225, 1263, 1433
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 719, 737, 755
Bse21I CCTNAGG 1 cut(s) 1335
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 3 cut(s) 294, 546, 552
BseBI CCWGG 3 cut(s) 344, 1138, 1409
BseDI CCNNGG 3 cut(s) 343, 869, 948
BseGI GGATG 2 cut(s) 23, 1029
BseJI GATNNNNATC 3 cut(s) 294, 546, 552
BseLI CCNNNNNNNGG 4 cut(s) 33, 225, 1263, 1433
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 1326
BseNI ACTGG 3 cut(s) 719, 737, 755
BseRI GAGGAG 3 cut(s) 494, 506, 1324
BseXI GCAGC 4 cut(s) 222, 234, 1314, 1327
Bsh1236I CGCG 3 cut(s) 118, 624, 630
Bsh1285I CGRYCG 1 cut(s) 628
BshFI GGCC 3 cut(s) 218, 687, 868
BsiEI CGRYCG 1 cut(s) 628
BsiHKAI GWGCWC 3 cut(s) 207, 892, 909
BsiSI CCGG 4 cut(s) 125, 219, 370, 869
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 4 cut(s) 33, 225, 1263, 1433
BsmAI GTCTC 2 cut(s) 236, 1406
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 3 cut(s) 218, 687, 868
Bsp119I TTCGAA 1 cut(s) 1292
Bsp1286I GDGCHC 3 cut(s) 207, 892, 909
Bsp143I GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
Bsp68I TCGCGA 1 cut(s) 630
BspACI CCGC 4 cut(s) 118, 622, 1178, 1240
BspANI GGCC 3 cut(s) 218, 687, 868
BspCNI CTCAG 1 cut(s) 1327
BspFNI CGCG 3 cut(s) 118, 624, 630
BspHI TCATGA 2 cut(s) 1072, 1372
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 4 cut(s) 179, 255, 1250, 1325
BspT104I TTCGAA 1 cut(s) 1292
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 3 cut(s) 719, 737, 755
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 343, 869, 948
BssMI GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
BssNI GRCGYC 2 cut(s) 1069, 1363
Bst2UI CCWGG 3 cut(s) 344, 1138, 1409
Bst4CI ACNGT 6 cut(s) 114, 144, 247, 698, 1150, 1346
Bst6I CTCTTC 6 cut(s) 450, 483, 513, 522, 528, 1049
BstACI GRCGYC 2 cut(s) 1069, 1363
BstBI TTCGAA 1 cut(s) 1292
BstC8I GCNNGC 4 cut(s) 171, 207, 211, 220
BstDEI CTNAG 1 cut(s) 1335
BstF5I GGATG 2 cut(s) 23, 1029
BstFNI CGCG 3 cut(s) 118, 624, 630
BstH2I RGCGCY 1 cut(s) 877
BstHHI GCGC 1 cut(s) 876
BstKTI GATC 9 cut(s) 187, 263, 298, 550, 556, 628, 943, 1245, 1333
BstMAI GTCTC 2 cut(s) 236, 1406
BstMBI GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
BstMCI CGRYCG 1 cut(s) 628
BstMWI GCNNNNNNNGC 6 cut(s) 215, 219, 366, 390, 627, 794
BstNI CCWGG 3 cut(s) 344, 1138, 1409
BstSCI CCNGG 5 cut(s) 342, 369, 868, 1136, 1407
BstUI CGCG 3 cut(s) 118, 624, 630
BstV1I GCAGC 4 cut(s) 222, 234, 1314, 1327
BstV2I GAAGAC 2 cut(s) 480, 1358
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
Bsu36I CCTNAGG 1 cut(s) 1335
BsuRI GGCC 3 cut(s) 218, 687, 868
BtsCI GGATG 2 cut(s) 23, 1029
BtsIMutI CAGTG 1 cut(s) 703
BtuMI TCGCGA 1 cut(s) 630
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 171, 207, 211, 220
CciI TCATGA 2 cut(s) 1072, 1372
CfoI GCGC 1 cut(s) 876
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 216, 866
CseI GACGC 1 cut(s) 1058
Csp6I GTAC 1 cut(s) 140
CviAII CATG 4 cut(s) 69, 822, 1073, 1373
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 1335
DpnI GATC 9 cut(s) 186, 262, 297, 549, 555, 627, 942, 1244, 1332
DpnII GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
DrdI GACNNNNNNGTC 1 cut(s) 1420
DseDI GACNNNNNNGTC 1 cut(s) 1420
Eam1104I CTCTTC 6 cut(s) 450, 483, 513, 522, 528, 1049
EarI CTCTTC 6 cut(s) 450, 483, 513, 522, 528, 1049
Ecl136II GAGCTC 1 cut(s) 890
Eco147I AGGCCT 1 cut(s) 687
Eco24I GRGCYC 1 cut(s) 892
Eco32I GATATC 1 cut(s) 1432
Eco53kI GAGCTC 1 cut(s) 890
Eco81I CCTNAGG 1 cut(s) 1335
EcoICRI GAGCTC 1 cut(s) 890
EcoRI GAATTC 2 cut(s) 269, 1036
EcoRII CCWGG 3 cut(s) 342, 1136, 1407
EcoRV GATATC 1 cut(s) 1432
EcoT38I GRGCYC 1 cut(s) 892
FaeI CATG 4 cut(s) 72, 825, 1076, 1376
FaqI GGGAC 1 cut(s) 42
FatI CATG 4 cut(s) 68, 821, 1072, 1372
FauNDI CATATG 1 cut(s) 563
Fnu4HI GCNGC 6 cut(s) 119, 223, 236, 622, 1303, 1316
FokI GGATG 2 cut(s) 10, 1036
FriOI GRGCYC 1 cut(s) 892
Fsp4HI GCNGC 6 cut(s) 119, 223, 236, 622, 1303, 1316
FspBI CTAG 5 cut(s) 198, 902, 944, 1143, 1441
GlaI GCGC 1 cut(s) 875
GluI GCNGC 6 cut(s) 119, 223, 236, 622, 1303, 1316
GsuI CTGGAG 1 cut(s) 1430
HaeII RGCGCY 1 cut(s) 877
HaeIII GGCC 3 cut(s) 218, 687, 868
HapII CCGG 4 cut(s) 125, 219, 370, 869
HgaI GACGC 1 cut(s) 1058
HhaI GCGC 1 cut(s) 876
Hin1I GRCGYC 2 cut(s) 1069, 1363
Hin1II CATG 4 cut(s) 72, 825, 1076, 1376
Hin6I GCGC 1 cut(s) 874
HinP1I GCGC 1 cut(s) 874
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 5 cut(s) 568, 653, 921, 1133, 1156
HpaII CCGG 4 cut(s) 125, 219, 370, 869
HphI GGTGA 3 cut(s) 966, 1120, 1416
Hpy166II GTNNAC 2 cut(s) 406, 1057
Hpy188I TCNGA 3 cut(s) 184, 275, 1155
Hpy188III TCNNGA 8 cut(s) 551, 581, 629, 918, 1073, 1184, 1334, 1373
Hpy8I GTNNAC 2 cut(s) 406, 1057
Hpy99I CGWCG 2 cut(s) 413, 1013
HpyAV CCTTC 3 cut(s) 35, 582, 1170
HpyCH4III ACNGT 6 cut(s) 114, 144, 247, 698, 1150, 1346
HpyCH4IV ACGT 3 cut(s) 849, 1011, 1363
HpyCH4V TGCA 6 cut(s) 159, 354, 424, 797, 990, 1081
HpyF10VI GCNNNNNNNGC 6 cut(s) 215, 219, 366, 390, 627, 794
HpyF3I CTNAG 1 cut(s) 1335
HpySE526I ACGT 3 cut(s) 849, 1011, 1363
Hsp92I GRCGYC 2 cut(s) 1069, 1363
Hsp92II CATG 4 cut(s) 72, 825, 1076, 1376
HspAI GCGC 1 cut(s) 874
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
LmnI GCTCC 4 cut(s) 10, 44, 202, 887
Lsp1109I GCAGC 4 cut(s) 222, 234, 1314, 1327
LweI GCATC 1 cut(s) 1189
MaeI CTAG 5 cut(s) 198, 902, 944, 1143, 1441
MaeII ACGT 3 cut(s) 849, 1011, 1363
MaeIII GTNAC 7 cut(s) 594, 710, 728, 746, 972, 1193, 1422
MalI GATC 9 cut(s) 186, 262, 297, 549, 555, 627, 942, 1244, 1332
MboI GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 3 cut(s) 207, 892, 909
MluCI AATT 8 cut(s) 96, 191, 269, 612, 762, 956, 1036, 1076
MlyI GAGTC 1 cut(s) 915
MmeI TCCRAC 1 cut(s) 832
MroNI GCCGGC 1 cut(s) 218
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 3 cut(s) 690, 1128, 1166
MslI CAYNNNNRTG 1 cut(s) 1377
MspA1I CMGCKG 1 cut(s) 1318
MspI CCGG 4 cut(s) 125, 219, 370, 869
MspR9I CCNGG 5 cut(s) 344, 371, 870, 1138, 1409
MvaI CCWGG 3 cut(s) 344, 1138, 1409
MvnI CGCG 3 cut(s) 118, 624, 630
MwoI GCNNNNNNNGC 6 cut(s) 215, 219, 366, 390, 627, 794
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 2 cut(s) 371, 870
NdeI CATATG 1 cut(s) 563
NdeII GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 4 cut(s) 72, 825, 1076, 1376
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 973
NmuCI GTSAC 4 cut(s) 710, 728, 972, 1422
NruI TCGCGA 1 cut(s) 630
NspV TTCGAA 1 cut(s) 1292
PagI TCATGA 2 cut(s) 1072, 1372
PceI AGGCCT 1 cut(s) 687
PdiI GCCGGC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 4 cut(s) 568, 653, 1133, 1156
PfoI TCCNGGA 1 cut(s) 1136
PkrI GCNGC 6 cut(s) 120, 224, 237, 623, 1304, 1317
Ple19I CGATCG 1 cut(s) 628
PleI GAGTC 1 cut(s) 915
PpsI GAGTC 1 cut(s) 915
PsiI TTATAA 1 cut(s) 680
Psp124BI GAGCTC 1 cut(s) 892
Psp1406I AACGTT 1 cut(s) 849
Psp6I CCWGG 3 cut(s) 342, 1136, 1407
PspGI CCWGG 3 cut(s) 342, 1136, 1407
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 216, 866
PsuI RGATCY 1 cut(s) 260
PvuI CGATCG 1 cut(s) 628
PvuII CAGCTG 1 cut(s) 1318
RgaI GCGATCGC 1 cut(s) 628
RruI TCGCGA 1 cut(s) 630
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 1377
SacI GAGCTC 1 cut(s) 892
SaqAI TTAA 3 cut(s) 690, 1128, 1166
SatI GCNGC 6 cut(s) 119, 223, 236, 622, 1303, 1316
Sau3AI GATC 9 cut(s) 184, 260, 295, 547, 553, 625, 940, 1242, 1330
Sau96I GGNCC 2 cut(s) 216, 866
SchI GAGTC 1 cut(s) 915
ScrFI CCNGG 5 cut(s) 344, 371, 870, 1138, 1409
SduI GDGCHC 3 cut(s) 207, 892, 909
SfaAI GCGATCGC 1 cut(s) 628
SfaNI GCATC 1 cut(s) 1189
SfuI TTCGAA 1 cut(s) 1292
SgfI GCGATCGC 1 cut(s) 628
SmiMI CAYNNNNRTG 1 cut(s) 1377
SmlI CTYRAG 3 cut(s) 239, 579, 1184
SmoI CTYRAG 3 cut(s) 239, 579, 1184
Sse9I AATT 8 cut(s) 96, 191, 269, 612, 762, 956, 1036, 1076
SseBI AGGCCT 1 cut(s) 687
SsiI CCGC 4 cut(s) 118, 622, 1178, 1240
SspI AATATT 1 cut(s) 282
SspMI CTAG 5 cut(s) 198, 902, 944, 1143, 1441
SstI GAGCTC 1 cut(s) 892
StuI AGGCCT 1 cut(s) 687
StyD4I CCNGG 5 cut(s) 342, 369, 868, 1136, 1407
TaaI ACNGT 6 cut(s) 114, 144, 247, 698, 1150, 1346
TaiI ACGT 3 cut(s) 852, 1014, 1366
TaqI TCGA 2 cut(s) 1008, 1292
TaqII GACCGA 1 cut(s) 1216
TasI AATT 8 cut(s) 96, 191, 269, 612, 762, 956, 1036, 1076
TauI GCSGC 2 cut(s) 121, 624
TfiI GAWTC 4 cut(s) 568, 653, 1133, 1156
Tru1I TTAA 3 cut(s) 690, 1128, 1166
Tru9I TTAA 3 cut(s) 690, 1128, 1166
TscAI CASTG 1 cut(s) 703
TseFI GTSAC 4 cut(s) 710, 728, 972, 1422
TseI GCWGC 4 cut(s) 222, 235, 1302, 1315
Tsp45I GTSAC 4 cut(s) 710, 728, 972, 1422
TspDTI ATGAA 7 cut(s) 678, 810, 1089, 1127, 1146, 1250, 1361
TspGWI ACGGA 1 cut(s) 1181
TspRI CASTG 1 cut(s) 703
XapI RAATTY 4 cut(s) 191, 269, 956, 1036
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 5 cut(s) 198, 902, 944, 1143, 1441
ZraI GACGTC 1 cut(s) 1364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.