Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

1874582 .. 1875939

Gene Structure 1358 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005803

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGGAAAGGAGCTTGAACACACTGGACGAGCGACATATGTAGGGCTTGAAGGAGCTTTGAGCAGTCCCTCTCCCTCATGGGCTGGTGGTTTTGACGATGGGCTAATTGAGGAGAGACTTTCGGGGCTTCCGGTCAAATCTTTAGTACGGTTTCGTTGTGTATGCAAGTCATGGCTTGCTCTAACCTCTGATCCCAAATTTGCTAGGAAGCACGCCAGCAAGGCCGGCAGCAGGTTGAAGCTGCTTGAGACAATCAATCCCACCAGATCCATAGTCTTCAGAGCAATATTAGACGAGGATGATCGGAAAGAAGTCAGCTTGATTTGTCGAGAAGATGAGGAAGAAGAGGAGAGAGAGGAAAAGGAAGACGAAGAGAATGACGAGGAGGAAGAAGAGGAGGGAGAGGAAGAAAAAGAGGAAAACGAAAACGAAAAAGAGGAGGACGAGGAGGAGAACGACGATGATCGTGATCTTATCATATGGAATCCTTCTACTCAAGATACATACAAGCTACCCAAAATCAAAATAACTTGTAACTTTGGTGGATTTGGTTATGATTCCACCAATGAAGATTACAAGATAGTTGAAAATCTCAACAACGTTGGAAAGTGCCGTGGGGCGAGGCGCTTATTGAACGGAGCTCTACATTGGCTAGAGTACACCTATTTAAGATTCACAATCACCTCTTTTGATCTAGCCGAGGAGAAATTTCAAGCTTTGTTGCCACCACCCGACGTTTGCACGACAGAAAGCACCATCCACTTCGGAATTGGGATGACTATTGGGAATTCTCTCTTCCTATATCTTTACGATTATGGGTGTCATGAATCGCAAACAGGTATTGCAATAACAACATGGGTGATGAAAGAATATGGGGCTAAGGAATCCTGGACTAAAGCTGGACTAAATTTATCTCCGCATCTTCAGTTCCATTACAGACTGACTTGGATTTTAAAGAATGGTAAAGTTTTGATGAACCGGATCAGCCATAGCGGCGGGTGGGAGCAGCTGGTGTTGTATGATCCTGAGGAGAACAATCAAAAGGAATATAGACGTCTTCTTCATGACTATCACATCTCGCCCGTATTATGCCTGGAGAGTTTAGTGTCACCAAAAGTCGGTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

376

Amino Acids

43.05

Weight (kDa)

4.78

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBA_1	PF07734	210 - 323	4e-06	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1057
Acc36I	ACCTGC	1 cut(s)	222
AciI	CCGC	3 cut(s)	917, 993, 996
AclI	AACGTT	1 cut(s)	600
AclWI	GGATC	4 cut(s)	185, 261, 989, 1016
AcsI	RAATTY	4 cut(s)	197, 707, 787, 907
AcuI	CTGAAG	2 cut(s)	262, 908
AcyI	GRCGYC	1 cut(s)	1054
AfaI	GTAC	2 cut(s)	147, 659
AfiI	CCNNNNNNNGG	2 cut(s)	231, 1118
AgsI	TTSAA	6 cut(s)	17, 50, 238, 587, 634, 713
AjnI	CCWGG	2 cut(s)	887, 1092
AluBI	AGCT	9 cut(s)	13, 56, 241, 318, 511, 641, 716, 899, 1009
AluI	AGCT	9 cut(s)	13, 56, 241, 318, 511, 641, 716, 899, 1009
Alw21I	GWGCWC	1 cut(s)	643
Alw26I	GTCTC	2 cut(s)	109, 242
AlwI	GGATC	4 cut(s)	185, 261, 989, 1016
AoxI	GGCC	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	228, 241, 1006
ApoI	RAATTY	4 cut(s)	197, 707, 787, 907
AspLEI	GCGC	1 cut(s)	627
AsuHPI	GGTGA	3 cut(s)	673, 871, 1101
AxyI	CCTNAGG	1 cut(s)	1026
BanII	GRGCYC	1 cut(s)	643
BbsI	GAAGAC	3 cut(s)	268, 372, 1049
Bbv12I	GWGCWC	1 cut(s)	643
BbvI	GCAGC	3 cut(s)	228, 240, 1018
BccI	CCATC	2 cut(s)	92, 764
BceAI	ACGGC	1 cut(s)	597
BciT130I	CCWGG	2 cut(s)	889, 1094
BcoDI	GTCTC	2 cut(s)	109, 242
BfaI	CTAG	3 cut(s)	204, 653, 695
BfoI	RGCGCY	1 cut(s)	628
BfuAI	ACCTGC	1 cut(s)	222
BglI	GCCNNNNNGGC	2 cut(s)	221, 993
BisI	GCNGC	4 cut(s)	229, 242, 994, 1007
BlsI	GCNGC	4 cut(s)	230, 243, 995, 1008
Bme1390I	CCNGG	2 cut(s)	889, 1094
BmrFI	CCNGG	2 cut(s)	889, 1094
BmsI	GCATC	1 cut(s)	928
BpiI	GAAGAC	3 cut(s)	268, 372, 1049
BpmI	CTGGAG	1 cut(s)	1115
Bpu10I	CCTNAGC	1 cut(s)	879
BpuEI	CTTGAG	2 cut(s)	266, 480
BsaBI	GATNNNNATC	1 cut(s)	468
BsaHI	GRCGYC	1 cut(s)	1054
BsaJI	CCNNGG	2 cut(s)	613, 699
BsaWI	WCCGGW	2 cut(s)	130, 978
Bsc4I	CCNNNNNNNGG	2 cut(s)	231, 1118
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	1 cut(s)	28
Bse21I	CCTNAGG	1 cut(s)	1026
Bse8I	GATNNNNATC	1 cut(s)	468
BseBI	CCWGG	2 cut(s)	889, 1094
BseDI	CCNNGG	2 cut(s)	613, 699
BseGI	GGATG	3 cut(s)	304, 756, 780
BseJI	GATNNNNATC	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	231, 1118
BseMII	CTCAG	1 cut(s)	1017
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	9 cut(s)	125, 362, 398, 410, 452, 461, 464, 716, 1043
BseXI	GCAGC	3 cut(s)	228, 240, 1018
BshFI	GGCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	643
BsiSI	CCGG	3 cut(s)	131, 225, 979
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	2 cut(s)	231, 1118
BsmAI	GTCTC	2 cut(s)	109, 242
BsmFI	GGGAC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	643
Bsp143I	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
BspACI	CCGC	3 cut(s)	917, 993, 996
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	1 cut(s)	1018
BspHI	TCATGA	2 cut(s)	823, 1063
BspMI	ACCTGC	1 cut(s)	222
BspPI	GGATC	4 cut(s)	185, 261, 989, 1016
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	613, 699
BssMI	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
BssNI	GRCGYC	1 cut(s)	1054
Bst2UI	CCWGG	2 cut(s)	889, 1094
Bst4CI	ACNGT	1 cut(s)	150
Bst6I	CTCTTC	4 cut(s)	339, 366, 387, 800
BstACI	GRCGYC	1 cut(s)	1054
BstC8I	GCNNGC	4 cut(s)	177, 213, 217, 226
BstDEI	CTNAG	2 cut(s)	879, 1026
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	3 cut(s)	304, 756, 780
BstH2I	RGCGCY	1 cut(s)	628
BstHHI	GCGC	1 cut(s)	627
BstKTI	GATC	8 cut(s)	193, 269, 304, 466, 472, 694, 984, 1024
BstMAI	GTCTC	2 cut(s)	109, 242
BstMBI	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 225, 993
BstNI	CCWGG	2 cut(s)	889, 1094
BstSCI	CCNGG	2 cut(s)	887, 1092
BstV1I	GCAGC	3 cut(s)	228, 240, 1018
BstV2I	GAAGAC	3 cut(s)	268, 372, 1049
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
Bsu36I	CCTNAGG	1 cut(s)	1026
BsuRI	GGCC	1 cut(s)	224
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	304, 756, 780
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	4 cut(s)	177, 213, 217, 226
CciI	TCATGA	2 cut(s)	823, 1063
CfoI	GCGC	1 cut(s)	627
Cfr10I	RCCGGY	1 cut(s)	224
Csp6I	GTAC	2 cut(s)	146, 658
CviAII	CATG	5 cut(s)	78, 171, 824, 855, 1064
CviQI	GTAC	2 cut(s)	146, 658
DdeI	CTNAG	2 cut(s)	879, 1026
DpnI	GATC	8 cut(s)	192, 268, 303, 465, 471, 693, 983, 1023
DpnII	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
DraI	TTTAAA	1 cut(s)	954
Eam1104I	CTCTTC	4 cut(s)	339, 366, 387, 800
EarI	CTCTTC	4 cut(s)	339, 366, 387, 800
Ecl136II	GAGCTC	1 cut(s)	641
Eco24I	GRGCYC	1 cut(s)	643
Eco53kI	GAGCTC	1 cut(s)	641
Eco57I	CTGAAG	2 cut(s)	262, 908
Eco81I	CCTNAGG	1 cut(s)	1026
EcoICRI	GAGCTC	1 cut(s)	641
EcoRI	GAATTC	1 cut(s)	787
EcoRII	CCWGG	2 cut(s)	887, 1092
EcoT38I	GRGCYC	1 cut(s)	643
FaeI	CATG	5 cut(s)	81, 174, 827, 858, 1067
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	5 cut(s)	77, 170, 823, 854, 1063
FauI	CCCGC	1 cut(s)	989
FauNDI	CATATG	2 cut(s)	37, 479
Fnu4HI	GCNGC	4 cut(s)	229, 242, 994, 1007
FokI	GGATG	3 cut(s)	311, 743, 787
FriOI	GRGCYC	1 cut(s)	643
Fsp4HI	GCNGC	4 cut(s)	229, 242, 994, 1007
FspBI	CTAG	3 cut(s)	204, 653, 695
GlaI	GCGC	1 cut(s)	626
GluI	GCNGC	4 cut(s)	229, 242, 994, 1007
GsuI	CTGGAG	1 cut(s)	1115
HaeII	RGCGCY	1 cut(s)	628
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	3 cut(s)	131, 225, 979
HhaI	GCGC	1 cut(s)	627
Hin1I	GRCGYC	1 cut(s)	1054
Hin1II	CATG	5 cut(s)	81, 174, 827, 858, 1067
Hin6I	GCGC	1 cut(s)	625
HinP1I	GCGC	1 cut(s)	625
HindIII	AAGCTT	1 cut(s)	714
HinfI	GANTC	5 cut(s)	484, 557, 672, 827, 884
HpaII	CCGG	3 cut(s)	131, 225, 979
HphI	GGTGA	3 cut(s)	673, 871, 1101
Hpy166II	GTNNAC	1 cut(s)	660
Hpy188I	TCNGA	4 cut(s)	190, 281, 306, 767
Hpy188III	TCNNGA	6 cut(s)	329, 467, 497, 824, 1025, 1064
Hpy8I	GTNNAC	1 cut(s)	660
Hpy99I	CGWCG	2 cut(s)	461, 737
HpyAV	CCTTC	2 cut(s)	44, 498
HpyCH4III	ACNGT	1 cut(s)	150
HpyCH4IV	ACGT	3 cut(s)	600, 735, 1054
HpyCH4V	TGCA	3 cut(s)	165, 741, 845
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 225, 993
HpyF3I	CTNAG	2 cut(s)	879, 1026
HpySE526I	ACGT	3 cut(s)	600, 735, 1054
Hsp92I	GRCGYC	1 cut(s)	1054
Hsp92II	CATG	5 cut(s)	81, 174, 827, 858, 1067
HspAI	GCGC	1 cut(s)	625
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
LmnI	GCTCC	4 cut(s)	10, 53, 638, 1003
Lsp1109I	GCAGC	3 cut(s)	228, 240, 1018
LweI	GCATC	1 cut(s)	928
MaeI	CTAG	3 cut(s)	204, 653, 695
MaeII	ACGT	3 cut(s)	600, 735, 1054
MaeIII	GTNAC	2 cut(s)	533, 1107
MalI	GATC	8 cut(s)	192, 268, 303, 465, 471, 693, 983, 1023
MboI	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	1 cut(s)	643
MluCI	AATT	6 cut(s)	105, 197, 707, 768, 787, 907
MmeI	TCCRAC	1 cut(s)	583
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	2 cut(s)	668, 953
MspA1I	CMGCKG	1 cut(s)	1009
MspI	CCGG	3 cut(s)	131, 225, 979
MspR9I	CCNGG	2 cut(s)	889, 1094
MvaI	CCWGG	2 cut(s)	889, 1094
MwoI	GCNNNNNNNGC	3 cut(s)	221, 225, 993
NaeI	GCCGGC	1 cut(s)	226
NdeI	CATATG	2 cut(s)	37, 479
NdeII	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	5 cut(s)	81, 174, 827, 858, 1067
NmeAIII	GCCGAG	1 cut(s)	724
NmuCI	GTSAC	1 cut(s)	1107
PagI	TCATGA	2 cut(s)	823, 1063
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	5 cut(s)	484, 557, 672, 827, 884
PfoI	TCCNGGA	1 cut(s)	887
PkrI	GCNGC	4 cut(s)	230, 243, 995, 1008
Psp124BI	GAGCTC	1 cut(s)	643
Psp1406I	AACGTT	1 cut(s)	600
Psp6I	CCWGG	2 cut(s)	887, 1092
PspGI	CCWGG	2 cut(s)	887, 1092
PsuI	RGATCY	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	1009
RsaI	GTAC	2 cut(s)	147, 659
RsaNI	GTAC	2 cut(s)	146, 658
SacI	GAGCTC	1 cut(s)	643
SaqAI	TTAA	2 cut(s)	668, 953
SatI	GCNGC	4 cut(s)	229, 242, 994, 1007
Sau3AI	GATC	8 cut(s)	190, 266, 301, 463, 469, 691, 981, 1021
ScrFI	CCNGG	2 cut(s)	889, 1094
SduI	GDGCHC	1 cut(s)	643
SfaNI	GCATC	1 cut(s)	928
SmlI	CTYRAG	2 cut(s)	245, 495
SmoI	CTYRAG	2 cut(s)	245, 495
Sse9I	AATT	6 cut(s)	105, 197, 707, 768, 787, 907
SsiI	CCGC	3 cut(s)	917, 993, 996
SspI	AATATT	1 cut(s)	288
SspMI	CTAG	3 cut(s)	204, 653, 695
SstI	GAGCTC	1 cut(s)	643
StyD4I	CCNGG	2 cut(s)	887, 1092
TaaI	ACNGT	1 cut(s)	150
TaiI	ACGT	3 cut(s)	603, 738, 1057
TaqI	TCGA	1 cut(s)	328
TasI	AATT	6 cut(s)	105, 197, 707, 768, 787, 907
TatI	WGTACW	1 cut(s)	657
TauI	GCSGC	1 cut(s)	996
TfiI	GAWTC	5 cut(s)	484, 557, 672, 827, 884
Tru1I	TTAA	2 cut(s)	668, 953
Tru9I	TTAA	2 cut(s)	668, 953
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	1107
TseI	GCWGC	3 cut(s)	228, 241, 1006
Tsp45I	GTSAC	1 cut(s)	1107
TspDTI	ATGAA	5 cut(s)	582, 840, 878, 989, 1052
TspGWI	ACGGA	1 cut(s)	651
TspRI	CASTG	1 cut(s)	28
XapI	RAATTY	4 cut(s)	197, 707, 787, 907
XcmI	CCANNNNNNNNNTGG	1 cut(s)	767
XspI	CTAG	3 cut(s)	204, 653, 695
ZraI	GACGTC	1 cut(s)	1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.