Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

17260911 .. 17267403

Gene Structure 6493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00095980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTGTCACTATCCAGTTTTGTCGACAAAGAATGTTTGGACCACATTTCCGCCTCTTTGATCGAACCTTTTGCCGAAATTGGGAGTACTATTGAAAATAATCTTCTTGTATACTTTTACGTTCCTAGCAATACCGGTGATACTACGCTTACAATATGGGTGATGAATGAATATGGGGTCAAGGCATCGTGGACTAAACTCTTACACATTACTTCAAAGATTTCAATGGGAAGATATGCATTTGAAAGGCACCGCGAGAAATATGAACATAAACACCGTTATGACCTCCACCGGCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

99

Amino Acids

11.61

Weight (kDa)

6.64

Isoelectric Point (pI)

45.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccI	GTMKAC	2 cut(s)	24, 111
AccII	CGCG	1 cut(s)	255
AciI	CCGC	2 cut(s)	51, 253
AfaI	GTAC	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgeI	ACCGGT	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	95, 216, 225, 245
AsiGI	ACCGGT	1 cut(s)	134
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	2 cut(s)	149, 172
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	1 cut(s)	249
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BfaI	CTAG	1 cut(s)	126
BmcAI	AGTACT	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	1 cut(s)	251
BmsI	GCATC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	2 cut(s)	134, 291
Bse1I	ACTGG	1 cut(s)	15
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseNI	ACTGG	1 cut(s)	15
Bsh1236I	CGCG	1 cut(s)	255
BshNI	GGYRCC	1 cut(s)	249
BshTI	ACCGGT	1 cut(s)	134
BsiSI	CCGG	2 cut(s)	135, 292
BslI	CCNNNNNNNGG	1 cut(s)	81
Bsp143I	GATC	1 cut(s)	60
BspACI	CCGC	2 cut(s)	51, 253
BspFNI	CGCG	1 cut(s)	255
BspLI	GGNNCC	1 cut(s)	251
BspT107I	GGYRCC	1 cut(s)	249
BsrFI	RCCGGY	2 cut(s)	134, 291
BsrI	ACTGG	1 cut(s)	15
BssAI	RCCGGY	2 cut(s)	134, 291
BssMI	GATC	1 cut(s)	60
BssNAI	GTATAC	1 cut(s)	112
Bst1107I	GTATAC	1 cut(s)	112
Bst4CI	ACNGT	1 cut(s)	278
BstFNI	CGCG	1 cut(s)	255
BstKTI	GATC	1 cut(s)	63
BstMBI	GATC	1 cut(s)	60
BstUI	CGCG	1 cut(s)	255
BstZ17I	GTATAC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	134, 291
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	1 cut(s)	87
CspAI	ACCGGT	1 cut(s)	134
CviQI	GTAC	1 cut(s)	87
DpnI	GATC	1 cut(s)	62
DpnII	GATC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	40
Eco47I	GGWCC	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	241
FaiI	YATR	7 cut(s)	112, 157, 174, 237, 264, 270, 282
FblI	GTMKAC	2 cut(s)	24, 111
FspBI	CTAG	1 cut(s)	126
HapII	CCGG	2 cut(s)	135, 292
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HpaII	CCGG	2 cut(s)	135, 292
HphI	GGTGA	2 cut(s)	149, 172
Hpy166II	GTNNAC	3 cut(s)	25, 112, 192
Hpy8I	GTNNAC	3 cut(s)	25, 112, 192
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	1 cut(s)	239
HpySE526I	ACGT	1 cut(s)	120
Kzo9I	GATC	1 cut(s)	60
LpnPI	CCDG	2 cut(s)	28, 148
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	126
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	6
MalI	GATC	1 cut(s)	62
MboI	GATC	1 cut(s)	60
MboII	GAAGA	2 cut(s)	95, 243
MluCI	AATT	1 cut(s)	78
MnlI	CCTC	2 cut(s)	64, 296
Mph1103I	ATGCAT	1 cut(s)	241
MslI	CAYNNNNRTG	1 cut(s)	279
MspI	CCGG	2 cut(s)	135, 292
MvnI	CGCG	1 cut(s)	255
NdeII	GATC	1 cut(s)	60
NlaIV	GGNNCC	1 cut(s)	251
NmuCI	GTSAC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	241
PinAI	ACCGGT	1 cut(s)	134
PspN4I	GGNNCC	1 cut(s)	251
PspPI	GGNCC	1 cut(s)	40
RsaI	GTAC	1 cut(s)	88
RsaNI	GTAC	1 cut(s)	87
RseI	CAYNNNNRTG	1 cut(s)	279
SalI	GTCGAC	1 cut(s)	23
Sau3AI	GATC	1 cut(s)	60
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	88
SetI	ASST	3 cut(s)	70, 123, 288
SfaNI	GCATC	1 cut(s)	194
SgeI	CNNG	8 cut(s)	27, 119, 138, 147, 193, 201, 266, 268
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	1 cut(s)	78
SsiI	CCGC	2 cut(s)	51, 253
SspMI	CTAG	1 cut(s)	126
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	2 cut(s)	24, 63
TasI	AATT	1 cut(s)	78
TatI	WGTACW	1 cut(s)	86
TseFI	GTSAC	1 cut(s)	6
Tsp45I	GTSAC	1 cut(s)	6
TspDTI	ATGAA	3 cut(s)	179, 183, 279
VpaK11BI	GGWCC	1 cut(s)	40
XmiI	GTMKAC	2 cut(s)	24, 111
XspI	CTAG	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.