FvH4_6g43211

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004848
Physical Location & Seq
Reverse (-)
33490726 .. 33493551
2826 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43211.t1

Sequence Viewer

Length: 486 bp
ATGAGGGGTACAATCAAATTAGTGGTCTTCACTTTAAAAACGAATTTATGGAGGACTGTTGAGGTCGTCAACCCCCCTGCTAGCTCGTTCAGGCGAGCAGAAGGATGTTTACTAAACGGAGCTCTACACTGGCTAGAGGAAGGAATTGAAGGGAAAGAGATATCAACAATGAAGATCATGTCTTCTGATTTAGCGGAGGAAAAGTTTCAGGAGGTTGTCCCATTAAACTTGTCCACTCTGTGTACACAGGAGGGTATCTCTCAAGGAGACATGACCAGCATCAGTGTAGGCATTGGGAAGACTAGTGGGAATCGTCTGTTTGTACATCTGTACGATATCAAGGAGGATGTGTACGAAGAAGGTATTGCAATGACAATATGGGTGATGAATGAAAATGGGGTCGAGAAATCTTCGACTAAACTTGTGCGGATTGCTTCAGATAGTATACGGCCTGTAGCTCCAAGATATGGTAGACAGACGCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

162

Amino Acids

17.89

Weight (kDa)

5.76

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_1 PF07734 6 - 136 2.2e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 467
AccI GTMKAC 2 cut(s) 445, 472
AciI CCGC 2 cut(s) 194, 427
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 479
AdeI CACNNNGTG 1 cut(s) 240
AfaI GTAC 5 cut(s) 10, 244, 324, 332, 353
AfiI CCNNNNNNNGG 1 cut(s) 467
AgsI TTSAA 1 cut(s) 149
AhlI ACTAGT 1 cut(s) 302
AluBI AGCT 3 cut(s) 84, 122, 458
AluI AGCT 3 cut(s) 84, 122, 458
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 261
AoxI GGCC 1 cut(s) 449
ApoI RAATTY 1 cut(s) 43
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
Asp700I GAANNNNTTC 1 cut(s) 204
AsuHPI GGTGA 1 cut(s) 394
AsuNHI GCTAGC 1 cut(s) 80
BanII GRGCYC 1 cut(s) 124
BarI GAAGNNNNNNTAC 2 cut(s) 93, 125
BbsI GAAGAC 3 cut(s) 19, 174, 305
Bbv12I GWGCWC 1 cut(s) 124
BceAI ACGGC 1 cut(s) 464
BcoDI GTCTC 1 cut(s) 261
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 3 cut(s) 81, 134, 303
BfmI CTRYAG 1 cut(s) 453
BmsI GCATC 1 cut(s) 288
BmtI GCTAGC 1 cut(s) 84
BpiI GAAGAC 3 cut(s) 19, 174, 305
BplI GAGNNNNNCTC 2 cut(s) 242, 274
BpuEI CTTGAG 1 cut(s) 246
BsaHI GRCGYC 1 cut(s) 479
BsaXI ACNNNNNCTCC 4 cut(s) 188, 218, 335, 365
Bsc4I CCNNNNNNNGG 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 134
Bse3DI GCAATG 1 cut(s) 375
BseGI GGATG 2 cut(s) 110, 352
BseLI CCNNNNNNNGG 1 cut(s) 467
BseMI GCAATG 1 cut(s) 375
BseNI ACTGG 1 cut(s) 134
BshFI GGCC 1 cut(s) 451
BsiHKAI GWGCWC 1 cut(s) 124
BslFI GGGAC 1 cut(s) 203
BslI CCNNNNNNNGG 1 cut(s) 467
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 203
BsnI GGCC 1 cut(s) 451
Bsp1286I GDGCHC 1 cut(s) 124
Bsp1407I TGTACA 2 cut(s) 242, 322
Bsp143I GATC 1 cut(s) 174
BspACI CCGC 2 cut(s) 194, 427
BspANI GGCC 1 cut(s) 451
BspOI GCTAGC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 375
BsrGI TGTACA 2 cut(s) 242, 322
BsrI ACTGG 1 cut(s) 134
BssMI GATC 1 cut(s) 174
BssNAI GTATAC 1 cut(s) 446
BssNI GRCGYC 1 cut(s) 479
Bst1107I GTATAC 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 58
BstACI GRCGYC 1 cut(s) 479
BstAUI TGTACA 2 cut(s) 242, 322
BstC8I GCNNGC 2 cut(s) 82, 96
BstF5I GGATG 2 cut(s) 110, 352
BstKTI GATC 1 cut(s) 177
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 1 cut(s) 174
BstSFI CTRYAG 1 cut(s) 453
BstV2I GAAGAC 3 cut(s) 19, 174, 305
BstZ17I GTATAC 1 cut(s) 446
BsuRI GGCC 1 cut(s) 451
BtsCI GGATG 2 cut(s) 110, 352
BtsIMutI CAGTG 2 cut(s) 127, 289
Cac8I GCNNGC 2 cut(s) 82, 96
Csp6I GTAC 5 cut(s) 9, 243, 323, 331, 352
CviAII CATG 2 cut(s) 178, 271
CviJI RGCY 5 cut(s) 84, 122, 133, 451, 458
CviKI_1 RGCY 5 cut(s) 84, 122, 133, 451, 458
CviQI GTAC 5 cut(s) 9, 243, 323, 331, 352
DpnI GATC 1 cut(s) 176
DpnII GATC 1 cut(s) 174
DraI TTTAAA 1 cut(s) 36
DraIII CACNNNGTG 1 cut(s) 240
Ecl136II GAGCTC 1 cut(s) 122
Eco24I GRGCYC 1 cut(s) 124
Eco32I GATATC 2 cut(s) 162, 337
Eco53kI GAGCTC 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 420
EcoICRI GAGCTC 1 cut(s) 122
EcoRV GATATC 2 cut(s) 162, 337
EcoT38I GRGCYC 1 cut(s) 124
FaeI CATG 2 cut(s) 181, 274
FaiI YATR 6 cut(s) 49, 179, 272, 379, 446, 468
FaqI GGGAC 1 cut(s) 203
FatI CATG 2 cut(s) 177, 270
FblI GTMKAC 2 cut(s) 445, 472
FokI GGATG 2 cut(s) 117, 359
FriOI GRGCYC 1 cut(s) 124
FspBI CTAG 3 cut(s) 81, 134, 303
HaeIII GGCC 1 cut(s) 451
Hin1I GRCGYC 1 cut(s) 479
Hin1II CATG 2 cut(s) 181, 274
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 310
HphI GGTGA 1 cut(s) 394
Hpy166II GTNNAC 8 cut(s) 70, 110, 234, 243, 245, 352, 446, 473
Hpy188I TCNGA 2 cut(s) 187, 439
Hpy188III TCNNGA 2 cut(s) 209, 403
Hpy8I GTNNAC 8 cut(s) 70, 110, 234, 243, 245, 352, 446, 473
HpyAV CCTTC 4 cut(s) 95, 134, 143, 353
HpyCH4III ACNGT 1 cut(s) 58
HpyCH4V TGCA 1 cut(s) 368
Hsp92I GRCGYC 1 cut(s) 479
Hsp92II CATG 2 cut(s) 181, 274
Kzo9I GATC 1 cut(s) 174
LmnI GCTCC 2 cut(s) 119, 463
LpnPI CCDG 7 cut(s) 76, 90, 115, 194, 233, 289, 465
LweI GCATC 1 cut(s) 288
MaeI CTAG 3 cut(s) 81, 134, 303
MalI GATC 1 cut(s) 176
MboI GATC 1 cut(s) 174
MboII GAAGA 6 cut(s) 19, 174, 184, 310, 368, 402
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 3 cut(s) 17, 43, 144
MnlI CCTC 7 cut(s) 45, 55, 130, 190, 205, 244, 337
MroXI GAANNNNTTC 1 cut(s) 204
MseI TTAA 2 cut(s) 35, 224
NdeII GATC 1 cut(s) 174
NheI GCTAGC 1 cut(s) 80
NlaIII CATG 2 cut(s) 181, 274
PdmI GAANNNNTTC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 310
PflMI CCANNNNNTGG 1 cut(s) 467
Psp124BI GAGCTC 1 cut(s) 124
RsaI GTAC 5 cut(s) 10, 244, 324, 332, 353
RsaNI GTAC 5 cut(s) 9, 243, 323, 331, 352
SacI GAGCTC 1 cut(s) 124
SaqAI TTAA 2 cut(s) 35, 224
Sau3AI GATC 1 cut(s) 174
SduI GDGCHC 1 cut(s) 124
SetI ASST 6 cut(s) 66, 86, 124, 216, 364, 460
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 453
SmlI CTYRAG 1 cut(s) 261
SmoI CTYRAG 1 cut(s) 261
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 3 cut(s) 17, 43, 144
SsiI CCGC 2 cut(s) 194, 427
SspMI CTAG 3 cut(s) 81, 134, 303
SstI GAGCTC 1 cut(s) 124
TaaI ACNGT 1 cut(s) 58
TaqI TCGA 2 cut(s) 402, 413
TasI AATT 3 cut(s) 17, 43, 144
TatI WGTACW 2 cut(s) 242, 322
TfiI GAWTC 1 cut(s) 310
Tru1I TTAA 2 cut(s) 35, 224
Tru9I TTAA 2 cut(s) 35, 224
TscAI CASTG 2 cut(s) 134, 289
TspDTI ATGAA 3 cut(s) 185, 401, 405
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 134, 289
Van91I CCANNNNNTGG 1 cut(s) 467
XapI RAATTY 1 cut(s) 43
XmiI GTMKAC 2 cut(s) 445, 472
XmnI GAANNNNTTC 1 cut(s) 204
XspI CTAG 3 cut(s) 81, 134, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.