Rroxscaffold_1G00049860

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
70184520 .. 70186877
2358 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00049860.1

Sequence Viewer

Length: 1668 bp
ATGGGGAACATCAACTTCATCTCTTTATCATGCTATGGCGTTCTTTCCCGCTGCTGGGATTCCATCACTAGACGAGCGACATATGTAGGGCTTGAAGGAGCTTTGAGCAACCCCTCTCCCTCATGGGATGGTCATTTTGACGATGACCTAATTGCTGAGATACTGTCGCGGCTTCCAGCCAAATCTTTACTACGGTTTCGTTGTGTATGCAAGTCATGGCTTGCTTTGATCTCTGATCCCAATTTTGCTAGGAAGCACATCAGCACATACGCCAGCAGGTTGAAGCTTCTTGAGACAGTCAATCCCACCAGATCCATAGACTTCGAAGCAATATTAAAGGATGACGATCGGGTGGGATATACCGTCCTACCAGAAGCACCAAGATTATGGGTTCTGGGTTCTTGCAATGGCTTGATATGCCGGGAAGAAGACGAGGGAGGTGATCTTATCTTATGGAACCCTTCTACTCGAGATACATACAAGTTACCGGAACAAATTAAAACTAGATATCGTCAGTTTTTTGGATTTGGTTATGATTCCACCAATGAAGATTACAAGGTCATAGTAGGCCTTGAAACCGAAATTACAGTCTTTACATTAAAAACCGGCTCATGGAAGATTGTTGAACAGTCCGACTACGTTGGAAGGTTTTATGGGGAGGGGTGCTTATTGAACGGATCTCTACATTGGCTAGAGGACAGTCGGTCAAAATTCACAATAATCTCGTTTGATCTGGCGGAGGAGAAATTTCAGGAGTTGCCACCACCCAATATTTGCAAGAAAGAAGTTTCTGGTCCCCTTGGTATTGGGAAAACTATTGACAACCGTCTCTTCCTATATCTTTATGATACCAAGCGTCATACGTCCCAAACAGGTATTGCATTTACAATATGGGTGCTGAACGAATATGGGGTGAATGAATCTTGGACTAGAGTTGTTCAAATTCCTTCTTCTAGTTTATCTCCTTGTCATATTTTTGATTATGAACCGATTTTGGTTTTAGAGGATGATAAAGTTTTGATGAATCGGATCAGCAATAGAAGCAAGTGGAACCAATTGGTATTGTATAATCCCAAGGAAAACCGTCAAAAGAAATATAGACGCCTTATTCATGACTATTACATAATGCCCAAATTATACGTGGAGACTTTAGTATCGCTAAAAACAGTAATGGTGGCCGGTGGTTGTGCTGCAGTGGAGGACGACTTACAAGCTCCTCTAATTGGGGCTGGGGTCTCCATTTTGGTATTTGGACTTGGAATTCAAGGGTGTGGCTCTAAATACTACCTCCTCATGCTCTTGTCGATGTTAGCTATTTCTATTAAAAATGGACAGTTAAGTTGTCTGTTACTCTGTTTGGCTGCAAATCGGAAGCGACGCACGAACCGTAGCTCCACGGCCTCTCCTACGACGCCGATTACGTGGCCTTTCTTTTTCTATCTGCAAATCGGAAGCGATGCACGAACTGGAGCAAAGCTCGACGCCGAGGAGGACGTCGGCGGCCACAAGGAAGACTACTTGAACAAGTCAGGGTTTAAGTGGTGGAAGAAGATTTACGGCGAGAAGAAGGTTCGCTTGGTAGCGTCACCGTCTGTGACGCCGGCTGTCTCGCTATCCCACTCGCTACGAAAGGCGTCGTCGTCACCGCCACTGACATTTTCGCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

555

Amino Acids

62.69

Weight (kDa)

8.61

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 47 - 84 8.4e-11 F-box domain
F-box-like PF12937 48 - 82 2.4e-07 F-box-like
FBA_3 PF08268 129 - 365 5.6e-21 F-box associated beta propeller domain
FBA_1 PF07734 132 - 361 2.8e-24 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1497
Acc36I ACCTGC 1 cut(s) 267
AccII CGCG 1 cut(s) 169
AciI CCGC 5 cut(s) 49, 169, 737, 1500, 1646
AclWI GGATC 4 cut(s) 230, 306, 685, 1037
AcoI YGGCCR 2 cut(s) 1176, 1501
AcsI RAATTY 4 cut(s) 710, 746, 942, 1260
AcyI GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
AfiI CCNNNNNNNGG 4 cut(s) 54, 55, 612, 1223
AgsI TTSAA 8 cut(s) 95, 283, 575, 626, 673, 941, 1265, 1522
AhdI GACNNNNNGTC 1 cut(s) 703
AjuI GAANNNNNNNTTGG 2 cut(s) 1559, 1591
AloI GAACNNNNNNTCC 2 cut(s) 1376, 1408
AluBI AGCT 6 cut(s) 101, 286, 1214, 1313, 1392, 1477
AluI AGCT 6 cut(s) 101, 286, 1214, 1313, 1392, 1477
Alw26I GTCTC 5 cut(s) 287, 833, 1139, 1240, 1612
AlwI GGATC 4 cut(s) 230, 306, 685, 1037
Ama87I CYCGRG 1 cut(s) 468
AoxI GGCC 5 cut(s) 568, 1176, 1398, 1424, 1501
ApeKI GCWGC 3 cut(s) 51, 1190, 1361
ApoI RAATTY 4 cut(s) 710, 746, 942, 1260
ArsI GACNNNNNNTTYG 2 cut(s) 573, 605
AspS9I GGNCC 1 cut(s) 794
AsuC2I CCSGG 1 cut(s) 422
AsuHPI GGTGA 4 cut(s) 452, 925, 1578, 1635
AsuII TTCGAA 1 cut(s) 324
AvaI CYCGRG 1 cut(s) 468
AvaII GGWCC 1 cut(s) 794
BaeI ACNNNNGTAYC 2 cut(s) 1137, 1170
BarI GAAGNNNNNNTAC 2 cut(s) 1538, 1570
BbsI GAAGAC 2 cut(s) 435, 1518
BbvI GCAGC 3 cut(s) 38, 1177, 1348
BccI CCATC 2 cut(s) 71, 122
BceAI ACGGC 3 cut(s) 1413, 1573, 1648
BcnI CCSGG 1 cut(s) 422
BcoDI GTCTC 5 cut(s) 287, 833, 1139, 1240, 1612
BfaI CTAG 6 cut(s) 69, 249, 504, 692, 930, 954
BfmI CTRYAG 1 cut(s) 1191
BfuAI ACCTGC 1 cut(s) 267
BisI GCNGC 5 cut(s) 52, 170, 1191, 1362, 1501
BlsI GCNGC 5 cut(s) 53, 171, 1192, 1363, 1502
Bme1390I CCNGG 1 cut(s) 422
Bme18I GGWCC 1 cut(s) 794
BmeRI GACNNNNNGTC 1 cut(s) 703
BmeT110I CYCGRG 1 cut(s) 468
BmgT120I GGNCC 1 cut(s) 794
BmiI GGNNCC 3 cut(s) 458, 796, 1052
BmrFI CCNGG 1 cut(s) 422
BmsI GCATC 1 cut(s) 1447
BoxI GACNNNNGTC 1 cut(s) 825
BpiI GAAGAC 2 cut(s) 435, 1518
BplI GAGNNNNNCTC 2 cut(s) 1461, 1493
BpmI CTGGAG 1 cut(s) 1488
Bpu14I TTCGAA 1 cut(s) 324
BpuEI CTTGAG 1 cut(s) 311
BpuMI CCSGG 1 cut(s) 422
BsaAI YACGTR 2 cut(s) 1141, 1422
BsaBI GATNNNNATC 1 cut(s) 345
BsaHI GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
BsaI GGTCTC 1 cut(s) 1240
BsaJI CCNNGG 4 cut(s) 799, 1074, 1395, 1485
BsaWI WCCGGW 1 cut(s) 487
BsaXI ACNNNNNCTCC 4 cut(s) 1376, 1387, 1406, 1417
Bsc4I CCNNNNNNNGG 4 cut(s) 54, 55, 612, 1223
Bse118I RCCGGY 3 cut(s) 605, 1178, 1600
Bse1I ACTGG 1 cut(s) 1471
Bse3DI GCAATG 1 cut(s) 412
Bse8I GATNNNNATC 1 cut(s) 345
BseDI CCNNGG 4 cut(s) 799, 1074, 1395, 1485
BseGI GGATG 3 cut(s) 133, 346, 1012
BseJI GATNNNNATC 1 cut(s) 345
BseLI CCNNNNNNNGG 4 cut(s) 54, 55, 612, 1223
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 1 cut(s) 147
BseNI ACTGG 1 cut(s) 1471
BseRI GAGGAG 4 cut(s) 755, 1206, 1280, 1502
BseXI GCAGC 3 cut(s) 38, 1177, 1348
BseYI CCCAGC 2 cut(s) 54, 1229
Bsh1236I CGCG 1 cut(s) 169
Bsh1285I CGRYCG 1 cut(s) 349
BshFI GGCC 5 cut(s) 570, 1178, 1400, 1426, 1503
BsiEI CGRYCG 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 468
BsiSI CCGG 5 cut(s) 421, 488, 606, 1179, 1601
BslFI GGGAC 2 cut(s) 780, 850
BslI CCNNNNNNNGG 4 cut(s) 54, 55, 612, 1223
BsmAI GTCTC 5 cut(s) 287, 833, 1139, 1240, 1612
BsmBI CGTCTC 1 cut(s) 833
BsmFI GGGAC 2 cut(s) 780, 850
BsnI GGCC 5 cut(s) 570, 1178, 1400, 1426, 1503
Bso31I GGTCTC 1 cut(s) 1240
BsoBI CYCGRG 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 324
Bsp143I GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
BspACI CCGC 5 cut(s) 49, 169, 737, 1500, 1646
BspANI GGCC 5 cut(s) 570, 1178, 1400, 1426, 1503
BspCNI CTCAG 1 cut(s) 148
BspFNI CGCG 1 cut(s) 169
BspHI TCATGA 1 cut(s) 1111
BspLI GGNNCC 3 cut(s) 458, 796, 1052
BspMAI CTGCAG 1 cut(s) 1195
BspMI ACCTGC 1 cut(s) 267
BspPI GGATC 4 cut(s) 230, 306, 685, 1037
BspT104I TTCGAA 1 cut(s) 324
BspTNI GGTCTC 1 cut(s) 1240
BsrDI GCAATG 1 cut(s) 412
BsrFI RCCGGY 3 cut(s) 605, 1178, 1600
BsrI ACTGG 1 cut(s) 1471
BssAI RCCGGY 3 cut(s) 605, 1178, 1600
BssECI CCNNGG 4 cut(s) 799, 1074, 1395, 1485
BssMI GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
BssNI GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
BssT1I CCWWGG 2 cut(s) 799, 1074
Bst6I CTCTTC 1 cut(s) 836
BstACI GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
BstBAI YACGTR 2 cut(s) 1141, 1422
BstBI TTCGAA 1 cut(s) 324
BstC8I GCNNGC 3 cut(s) 222, 274, 1602
BstDEI CTNAG 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 1395
BstF5I GGATG 3 cut(s) 133, 346, 1012
BstFNI CGCG 1 cut(s) 169
BstKTI GATC 8 cut(s) 231, 238, 314, 349, 445, 680, 733, 1032
BstMAI GTCTC 5 cut(s) 287, 833, 1139, 1240, 1612
BstMBI GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
BstMCI CGRYCG 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 417, 1041
BstPAI GACNNNNGTC 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 420
BstSFI CTRYAG 1 cut(s) 1191
BstUI CGCG 1 cut(s) 169
BstV1I GCAGC 3 cut(s) 38, 1177, 1348
BstV2I GAAGAC 2 cut(s) 435, 1518
BstX2I RGATCY 2 cut(s) 311, 677
BstXI CCANNNNNNTGG 1 cut(s) 387
BstYI RGATCY 2 cut(s) 311, 677
BsuRI GGCC 5 cut(s) 570, 1178, 1400, 1426, 1503
BtgI CCRYGG 1 cut(s) 1395
BtgZI GCGATG 1 cut(s) 1470
BtsCI GGATG 3 cut(s) 133, 346, 1012
BtsI GCAGTG 1 cut(s) 1200
BtsIMutI CAGTG 2 cut(s) 1200, 1649
BveI ACCTGC 1 cut(s) 267
Cac8I GCNNGC 3 cut(s) 222, 274, 1602
CciI TCATGA 1 cut(s) 1111
Cfr10I RCCGGY 3 cut(s) 605, 1178, 1600
Cfr13I GGNCC 1 cut(s) 794
CseI GACGC 8 cut(s) 845, 1110, 1386, 1420, 1490, 1572, 1606, 1623
CviAII CATG 6 cut(s) 30, 123, 216, 612, 1112, 1294
DdeI CTNAG 1 cut(s) 156
DpnI GATC 8 cut(s) 230, 237, 313, 348, 444, 679, 732, 1031
DpnII GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
DriI GACNNNNNGTC 1 cut(s) 703
EaeI YGGCCR 2 cut(s) 1176, 1501
Eam1104I CTCTTC 1 cut(s) 836
Eam1105I GACNNNNNGTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 836
EciI GGCGGA 1 cut(s) 752
Eco130I CCWWGG 2 cut(s) 799, 1074
Eco147I AGGCCT 1 cut(s) 570
Eco31I GGTCTC 1 cut(s) 1240
Eco32I GATATC 1 cut(s) 509
Eco47I GGWCC 1 cut(s) 794
Eco88I CYCGRG 1 cut(s) 468
EcoRI GAATTC 1 cut(s) 1260
EcoRV GATATC 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 799, 1074
ErhI CCWWGG 2 cut(s) 799, 1074
Esp3I CGTCTC 1 cut(s) 833
FaeI CATG 6 cut(s) 33, 126, 219, 615, 1115, 1297
FalI AAGNNNNNCTT 2 cut(s) 1559, 1591
FaqI GGGAC 2 cut(s) 780, 850
FatI CATG 6 cut(s) 29, 122, 215, 611, 1111, 1293
FauI CCCGC 1 cut(s) 56
FauNDI CATATG 1 cut(s) 82
Fnu4HI GCNGC 5 cut(s) 52, 170, 1191, 1362, 1501
FokI GGATG 3 cut(s) 140, 353, 1019
Fsp4HI GCNGC 5 cut(s) 52, 170, 1191, 1362, 1501
FspBI CTAG 6 cut(s) 69, 249, 504, 692, 930, 954
GluI GCNGC 5 cut(s) 52, 170, 1191, 1362, 1501
GsaI CCCAGC 2 cut(s) 58, 1233
GsuI CTGGAG 1 cut(s) 1488
HaeIII GGCC 5 cut(s) 570, 1178, 1400, 1426, 1503
HapII CCGG 5 cut(s) 421, 488, 606, 1179, 1601
HgaI GACGC 8 cut(s) 845, 1110, 1386, 1420, 1490, 1572, 1606, 1623
Hin1I GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
Hin1II CATG 6 cut(s) 33, 126, 219, 615, 1115, 1297
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 4 cut(s) 59, 536, 920, 1024
HpaII CCGG 5 cut(s) 421, 488, 606, 1179, 1601
HphI GGTGA 4 cut(s) 452, 925, 1578, 1635
Hpy188I TCNGA 5 cut(s) 235, 634, 1029, 1371, 1451
Hpy188III TCNNGA 4 cut(s) 290, 470, 752, 1112
Hpy99I CGWCG 6 cut(s) 1380, 1414, 1484, 1499, 1639, 1642
HpyAV CCTTC 5 cut(s) 89, 471, 639, 957, 1561
HpyCH4IV ACGT 5 cut(s) 639, 863, 1140, 1421, 1494
HpyCH4V TGCA 8 cut(s) 210, 405, 777, 881, 1193, 1364, 1444, 1460
HpyF10VI GCNNNNNNNGC 2 cut(s) 417, 1041
HpyF3I CTNAG 1 cut(s) 156
HpySE526I ACGT 5 cut(s) 639, 863, 1140, 1421, 1494
Hsp92I GRCGYC 6 cut(s) 1102, 1412, 1482, 1494, 1598, 1634
Hsp92II CATG 6 cut(s) 33, 126, 219, 615, 1115, 1297
KroI GCCGGC 1 cut(s) 1600
KroNI GCCGGC 1 cut(s) 1602
Kzo9I GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
LmnI GCTCC 4 cut(s) 98, 1219, 1397, 1469
Lsp1109I GCAGC 3 cut(s) 38, 1177, 1348
LweI GCATC 1 cut(s) 1447
MaeI CTAG 6 cut(s) 69, 249, 504, 692, 930, 954
MaeII ACGT 5 cut(s) 639, 863, 1140, 1421, 1494
MaeIII GTNAC 5 cut(s) 483, 1347, 1584, 1594, 1641
MalI GATC 8 cut(s) 230, 237, 313, 348, 444, 679, 732, 1031
MboI GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
MfeI CAATTG 1 cut(s) 1055
MflI RGATCY 2 cut(s) 311, 677
MmeI TCCRAC 2 cut(s) 622, 657
MroNI GCCGGC 1 cut(s) 1600
MseI TTAA 6 cut(s) 335, 498, 599, 1323, 1337, 1536
MspA1I CMGCKG 1 cut(s) 51
MspI CCGG 5 cut(s) 421, 488, 606, 1179, 1601
MspR9I CCNGG 1 cut(s) 422
MunI CAATTG 1 cut(s) 1055
MvnI CGCG 1 cut(s) 169
MwoI GCNNNNNNNGC 2 cut(s) 417, 1041
NaeI GCCGGC 1 cut(s) 1602
NciI CCSGG 1 cut(s) 422
NdeI CATATG 1 cut(s) 82
NdeII GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
NgoMIV GCCGGC 1 cut(s) 1600
NlaIII CATG 6 cut(s) 33, 126, 219, 615, 1115, 1297
NlaIV GGNNCC 3 cut(s) 458, 796, 1052
NmeAIII GCCGAG 1 cut(s) 1510
NmuCI GTSAC 3 cut(s) 1584, 1594, 1641
NspV TTCGAA 1 cut(s) 324
PaeR7I CTCGAG 1 cut(s) 468
PagI TCATGA 1 cut(s) 1111
PceI AGGCCT 1 cut(s) 570
PcsI WCGNNNNNNNCGW 2 cut(s) 1384, 1418
PdiI GCCGGC 1 cut(s) 1602
PfeI GAWTC 4 cut(s) 59, 536, 920, 1024
PkrI GCNGC 5 cut(s) 53, 171, 1192, 1363, 1502
Ple19I CGATCG 1 cut(s) 349
Ppu21I YACGTR 2 cut(s) 1141, 1422
PshAI GACNNNNGTC 1 cut(s) 825
PspFI CCCAGC 2 cut(s) 54, 1229
PspN4I GGNNCC 3 cut(s) 458, 796, 1052
PspPI GGNCC 1 cut(s) 794
PstI CTGCAG 1 cut(s) 1195
PsuI RGATCY 2 cut(s) 311, 677
PvuI CGATCG 1 cut(s) 349
SaqAI TTAA 6 cut(s) 335, 498, 599, 1323, 1337, 1536
SatI GCNGC 5 cut(s) 52, 170, 1191, 1362, 1501
Sau3AI GATC 8 cut(s) 228, 235, 311, 346, 442, 677, 730, 1029
Sau96I GGNCC 1 cut(s) 794
ScrFI CCNGG 1 cut(s) 422
SfaNI GCATC 1 cut(s) 1447
SfcI CTRYAG 1 cut(s) 1191
Sfr274I CTCGAG 1 cut(s) 468
SfuI TTCGAA 1 cut(s) 324
SinI GGWCC 1 cut(s) 794
SlaI CTCGAG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 290, 468
SmoI CTYRAG 2 cut(s) 290, 468
SseBI AGGCCT 1 cut(s) 570
SsiI CCGC 5 cut(s) 49, 169, 737, 1500, 1646
SspI AATATT 2 cut(s) 333, 772
SspMI CTAG 6 cut(s) 69, 249, 504, 692, 930, 954
StuI AGGCCT 1 cut(s) 570
StyD4I CCNGG 1 cut(s) 420
StyI CCWWGG 2 cut(s) 799, 1074
TaiI ACGT 5 cut(s) 642, 866, 1143, 1424, 1497
TaqI TCGA 4 cut(s) 324, 469, 1304, 1479
TaqII GACCGA 1 cut(s) 693
TauI GCSGC 2 cut(s) 172, 1503
TfiI GAWTC 4 cut(s) 59, 536, 920, 1024
Tru1I TTAA 6 cut(s) 335, 498, 599, 1323, 1337, 1536
Tru9I TTAA 6 cut(s) 335, 498, 599, 1323, 1337, 1536
TscAI CASTG 2 cut(s) 1200, 1656
TseFI GTSAC 3 cut(s) 1584, 1594, 1641
TseI GCWGC 3 cut(s) 51, 1190, 1361
Tsp45I GTSAC 3 cut(s) 1584, 1594, 1641
TspDTI ATGAA 6 cut(s) 7, 561, 933, 999, 1037, 1100
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 1200, 1656
VpaK11BI GGWCC 1 cut(s) 794
XapI RAATTY 4 cut(s) 710, 746, 942, 1260
XcmI CCANNNNNNNNNTGG 1 cut(s) 1138
XhoI CTCGAG 1 cut(s) 468
XspI CTAG 6 cut(s) 69, 249, 504, 692, 930, 954
ZraI GACGTC 1 cut(s) 1495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.