Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

57343075 .. 57345361

Gene Structure 2287 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0447100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCGACGACAACCGCCGCTCCTCCACGTCAGCTCTCGCAGAAGGAGGCCGACATCCAGATGATGTTGGCCGCCGAGGTCCATCTCGGCACCAAAAACTGCGACTTTCAGATGGAGCGTTACGCCTTCAAGCGCCGCAACGATGGGATTTATATTATCAATCTTGGAAAGACATGGGAGAAACTTCAGCTAGCTGCTAGGGTGATTGTTGCTATTGAAAACCCCAAGGACATCATTGTGCAGTCCGCCAGGCCTTATGGGCAGAGGGCTGTCCTCAAGTTTGCTCAGCACACTGGTGCTAATGCCATTGCCGGAAGGCACACTCCCGGTACTTTCACCAACCAGCTTCAGACTTCCTTCAACGAGCCCCGTCTCCTCATCTTGACTGACCCCAGAACTGATCACCAGCCAATTAAGGAAGCTGCTCTTGGGAACATTCCCACCATTGCTTTCTGTGATACTGATTCACCCATGCGTTATGTTGACATTGGCATTCCGGCCAATAATAAGGGGAAGCACAGTATTGGATGTCTTTTCTGGTTGCTGGCAAGGATGGTTTTGCAAATGCGCGGTTCCGTTAGGCCAGGACATAAGTGGGATGTCATGGTGGATTTGTTCTTCTATAGAGAGCCTGAGGAGGCCAAGCAACAAGAGGAGGAAGAAGCAGTGCAAGCTCCAGAGTACATTGAATATTCCGGTGGTCTTGGTGGTGATCAGTGGCCTACCCAAATTGCTGATGCTTCTTGGTCTGCCGATGCAGCCCCAGCTATCCCAGCTGTTCCTGCTGTTCCTGCTGCCGGCTGGACTGCAGAACCAGGTGCGACACAAGAAGGTTGGGATGCTGCTCCTGCACCAGTGGTCGCTGCTCCTATCCCTGAGGGTAGTGCTCCCGTAGTGGCCAGTGGTTGGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like FBA_1

Protein Analysis

304

Amino Acids

33.18

Weight (kDa)

5.33

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S2	PF00318	22 - 115	9.2e-12	Ribosomal protein S2
Ribosomal_S2	PF00318	121 - 186	1.7e-11	Ribosomal protein S2
40S_SA_C	PF16122	206 - 287	6.2e-06	40S ribosomal protein SA C-terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	906
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	570
AciI	CCGC	6 cut(s)	15, 18, 72, 136, 246, 570
AcoI	YGGCCR	3 cut(s)	69, 498, 897
AcuI	CTGAAG	2 cut(s)	170, 332
AfaI	GTAC	2 cut(s)	331, 683
AfiI	CCNNNNNNNGG	2 cut(s)	797, 906
AgsI	TTSAA	4 cut(s)	130, 218, 361, 689
AjiI	CACGTC	1 cut(s)	29
AjnI	CCWGG	3 cut(s)	248, 583, 814
AjuI	GAANNNNNNNTTGG	2 cut(s)	411, 443
AleI	CACNNNNGTG	1 cut(s)	294
AluBI	AGCT	8 cut(s)	34, 190, 194, 346, 422, 674, 767, 776
AluI	AGCT	8 cut(s)	34, 190, 194, 346, 422, 674, 767, 776
Alw21I	GWGCWC	1 cut(s)	889
Alw26I	GTCTC	1 cut(s)	377
AoxI	GGCC	8 cut(s)	48, 69, 251, 498, 581, 639, 719, 897
ApeKI	GCWGC	6 cut(s)	194, 422, 758, 794, 842, 863
AspLEI	GCGC	2 cut(s)	135, 570
AspS9I	GGNCC	1 cut(s)	79
AsuC2I	CCSGG	1 cut(s)	327
AsuHPI	GGTGA	5 cut(s)	214, 328, 395, 459, 722
AsuNHI	GCTAGC	1 cut(s)	190
AvaII	GGWCC	1 cut(s)	79
AxyI	CCTNAGG	2 cut(s)	633, 876
BalI	TGGCCA	1 cut(s)	899
BanI	GGYRCC	1 cut(s)	89
BanII	GRGCYC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	889
BbvI	GCAGC	6 cut(s)	181, 409, 770, 781, 829, 850
BccI	CCATC	4 cut(s)	90, 106, 137, 547
BciT130I	CCWGG	3 cut(s)	250, 585, 816
BclI	TGATCA	2 cut(s)	400, 712
BcnI	CCSGG	1 cut(s)	327
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	2 cut(s)	191, 198
BfmI	CTRYAG	2 cut(s)	622, 807
BfoI	RGCGCY	1 cut(s)	136
BglI	GCCNNNNNGGC	1 cut(s)	259
BisI	GCNGC	9 cut(s)	18, 72, 136, 195, 423, 759, 795, 843, 864
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	9 cut(s)	19, 73, 137, 196, 424, 760, 796, 844, 865
Bme1390I	CCNGG	4 cut(s)	250, 327, 585, 816
Bme18I	GGWCC	1 cut(s)	79
BmgBI	CACGTC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	79
BmiI	GGNNCC	2 cut(s)	91, 574
BmrFI	CCNGG	4 cut(s)	250, 327, 585, 816
BmsI	GCATC	3 cut(s)	727, 745, 829
BmtI	GCTAGC	1 cut(s)	194
BpmI	CTGGAG	1 cut(s)	660
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	260
BpuMI	CCSGG	1 cut(s)	327
BsaJI	CCNNGG	2 cut(s)	75, 225
BsaWI	WCCGGW	1 cut(s)	695
BsaXI	ACNNNNNCTCC	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	797, 906
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	3 cut(s)	298, 854, 900
Bse21I	CCTNAGG	2 cut(s)	633, 876
Bse3DI	GCAATG	2 cut(s)	306, 444
BseBI	CCWGG	3 cut(s)	250, 585, 816
BseDI	CCNNGG	2 cut(s)	75, 225
BseGI	GGATG	5 cut(s)	54, 533, 558, 604, 844
BseLI	CCNNNNNNNGG	2 cut(s)	797, 906
BseMI	GCAATG	2 cut(s)	306, 444
BseMII	CTCAG	3 cut(s)	299, 624, 867
BseNI	ACTGG	3 cut(s)	298, 854, 900
BseRI	GAGGAG	4 cut(s)	12, 365, 650, 668
BseXI	GCAGC	6 cut(s)	181, 409, 770, 781, 829, 850
BseYI	CCCAGC	2 cut(s)	763, 772
BsgI	GTGCAG	2 cut(s)	260, 834
Bsh1236I	CGCG	1 cut(s)	570
BshFI	GGCC	8 cut(s)	50, 71, 253, 500, 583, 641, 721, 899
BshNI	GGYRCC	1 cut(s)	89
BsiHKAI	GWGCWC	1 cut(s)	889
BsiSI	CCGG	5 cut(s)	312, 327, 497, 696, 798
BslI	CCNNNNNNNGG	2 cut(s)	797, 906
BsmAI	GTCTC	1 cut(s)	377
BsmBI	CGTCTC	1 cut(s)	377
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	8 cut(s)	50, 71, 253, 500, 583, 641, 721, 899
Bsp1286I	GDGCHC	2 cut(s)	369, 889
Bsp143I	GATC	2 cut(s)	400, 712
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	6 cut(s)	15, 18, 72, 136, 246, 570
BspANI	GGCC	8 cut(s)	50, 71, 253, 500, 583, 641, 721, 899
BspCNI	CTCAG	3 cut(s)	298, 625, 868
BspFNI	CGCG	1 cut(s)	570
BspLI	GGNNCC	2 cut(s)	91, 574
BspMAI	CTGCAG	1 cut(s)	811
BspOI	GCTAGC	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	89
BsrBI	CCGCTC	1 cut(s)	20
BsrDI	GCAATG	2 cut(s)	306, 444
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	3 cut(s)	298, 854, 900
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	2 cut(s)	75, 225
BssMI	GATC	2 cut(s)	400, 712
BssT1I	CCWWGG	1 cut(s)	225
Bst2UI	CCWGG	3 cut(s)	250, 585, 816
Bst4CI	ACNGT	1 cut(s)	521
BstC8I	GCNNGC	4 cut(s)	192, 546, 672, 799
BstDEI	CTNAG	3 cut(s)	285, 633, 876
BstF5I	GGATG	5 cut(s)	54, 533, 558, 604, 844
BstFNI	CGCG	1 cut(s)	570
BstH2I	RGCGCY	1 cut(s)	136
BstHHI	GCGC	2 cut(s)	135, 570
BstKTI	GATC	2 cut(s)	403, 715
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	400, 712
BstMWI	GCNNNNNNNGC	8 cut(s)	259, 671, 758, 764, 773, 782, 791, 848
BstNI	CCWGG	3 cut(s)	250, 585, 816
BstSCI	CCNGG	4 cut(s)	248, 325, 583, 814
BstSFI	CTRYAG	2 cut(s)	622, 807
BstUI	CGCG	1 cut(s)	570
BstV1I	GCAGC	6 cut(s)	181, 409, 770, 781, 829, 850
Bsu36I	CCTNAGG	2 cut(s)	633, 876
BsuRI	GGCC	8 cut(s)	50, 71, 253, 500, 583, 641, 721, 899
BtrI	CACGTC	1 cut(s)	29
BtsCI	GGATG	5 cut(s)	54, 533, 558, 604, 844
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	5 cut(s)	291, 672, 722, 861, 907
Cac8I	GCNNGC	4 cut(s)	192, 546, 672, 799
CfoI	GCGC	2 cut(s)	135, 570
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	2 cut(s)	330, 682
CviAII	CATG	3 cut(s)	174, 472, 604
CviQI	GTAC	2 cut(s)	330, 682
DdeI	CTNAG	3 cut(s)	285, 633, 876
DpnI	GATC	2 cut(s)	402, 714
DpnII	GATC	2 cut(s)	400, 712
EaeI	YGGCCR	3 cut(s)	69, 498, 897
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	1 cut(s)	225
Eco147I	AGGCCT	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	79
Eco57I	CTGAAG	2 cut(s)	170, 332
Eco81I	CCTNAGG	2 cut(s)	633, 876
EcoRII	CCWGG	3 cut(s)	248, 583, 814
EcoT14I	CCWWGG	1 cut(s)	225
EcoT38I	GRGCYC	1 cut(s)	369
ErhI	CCWWGG	1 cut(s)	225
Esp3I	CGTCTC	1 cut(s)	377
FaeI	CATG	3 cut(s)	177, 475, 607
FaiI	YATR	8 cut(s)	153, 175, 258, 473, 480, 591, 605, 624
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	3 cut(s)	173, 471, 603
FbaI	TGATCA	2 cut(s)	400, 712
Fnu4HI	GCNGC	9 cut(s)	18, 72, 136, 195, 423, 759, 795, 843, 864
FokI	GGATG	5 cut(s)	41, 540, 565, 611, 851
FriOI	GRGCYC	1 cut(s)	369
Fsp4HI	GCNGC	9 cut(s)	18, 72, 136, 195, 423, 759, 795, 843, 864
FspBI	CTAG	2 cut(s)	191, 198
GlaI	GCGC	2 cut(s)	134, 569
GluI	GCNGC	9 cut(s)	18, 72, 136, 195, 423, 759, 795, 843, 864
GsaI	CCCAGC	2 cut(s)	767, 776
GsuI	CTGGAG	1 cut(s)	660
HaeII	RGCGCY	1 cut(s)	136
HaeIII	GGCC	8 cut(s)	50, 71, 253, 500, 583, 641, 721, 899
HapII	CCGG	5 cut(s)	312, 327, 497, 696, 798
HhaI	GCGC	2 cut(s)	135, 570
Hin1II	CATG	3 cut(s)	177, 475, 607
Hin6I	GCGC	2 cut(s)	133, 568
HinP1I	GCGC	2 cut(s)	133, 568
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	1 cut(s)	464
HpaII	CCGG	5 cut(s)	312, 327, 497, 696, 798
HphI	GGTGA	5 cut(s)	214, 328, 395, 459, 722
Hpy166II	GTNNAC	1 cut(s)	484
Hpy188I	TCNGA	2 cut(s)	111, 351
Hpy188III	TCNNGA	3 cut(s)	58, 382, 677
Hpy8I	GTNNAC	1 cut(s)	484
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	5 cut(s)	37, 136, 309, 367, 824
HpyCH4III	ACNGT	1 cut(s)	521
HpyCH4IV	ACGT	1 cut(s)	28
HpyCH4V	TGCA	6 cut(s)	241, 562, 670, 758, 809, 851
HpyF10VI	GCNNNNNNNGC	8 cut(s)	259, 671, 758, 764, 773, 782, 791, 848
HpyF3I	CTNAG	3 cut(s)	285, 633, 876
HpySE526I	ACGT	1 cut(s)	28
Hsp92II	CATG	3 cut(s)	177, 475, 607
HspAI	GCGC	2 cut(s)	133, 568
KroI	GCCGGC	1 cut(s)	797
KroNI	GCCGGC	1 cut(s)	799
Ksp22I	TGATCA	2 cut(s)	400, 712
Kzo9I	GATC	2 cut(s)	400, 712
LmnI	GCTCC	6 cut(s)	25, 115, 679, 850, 871, 892
Lsp1109I	GCAGC	6 cut(s)	181, 409, 770, 781, 829, 850
LweI	GCATC	3 cut(s)	727, 745, 829
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	2 cut(s)	191, 198
MaeII	ACGT	1 cut(s)	28
MaeIII	GTNAC	1 cut(s)	119
MalI	GATC	2 cut(s)	402, 714
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	400, 712
MboII	GAAGA	2 cut(s)	610, 671
MhlI	GDGCHC	2 cut(s)	369, 889
MlsI	TGGCCA	1 cut(s)	899
MluCI	AATT	2 cut(s)	411, 729
MluNI	TGGCCA	1 cut(s)	899
Mox20I	TGGCCA	1 cut(s)	899
MroNI	GCCGGC	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	899
MseI	TTAA	1 cut(s)	414
MslI	CAYNNNNRTG	3 cut(s)	59, 236, 294
Msp20I	TGGCCA	1 cut(s)	899
MspA1I	CMGCKG	1 cut(s)	776
MspI	CCGG	5 cut(s)	312, 327, 497, 696, 798
MspR9I	CCNGG	4 cut(s)	250, 327, 585, 816
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	250, 585, 816
MvnI	CGCG	1 cut(s)	570
MwoI	GCNNNNNNNGC	8 cut(s)	259, 671, 758, 764, 773, 782, 791, 848
NaeI	GCCGGC	1 cut(s)	799
NciI	CCSGG	1 cut(s)	327
NdeII	GATC	2 cut(s)	400, 712
NgoMIV	GCCGGC	1 cut(s)	797
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	3 cut(s)	177, 475, 607
NlaIV	GGNNCC	2 cut(s)	91, 574
NmeAIII	GCCGAG	2 cut(s)	66, 100
OliI	CACNNNNGTG	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	492
PdiI	GCCGGC	1 cut(s)	799
PfeI	GAWTC	1 cut(s)	464
PflMI	CCANNNNNTGG	1 cut(s)	906
PkrI	GCNGC	9 cut(s)	19, 73, 137, 196, 424, 760, 796, 844, 865
Psp6I	CCWGG	3 cut(s)	248, 583, 814
PspFI	CCCAGC	2 cut(s)	763, 772
PspGI	CCWGG	3 cut(s)	248, 583, 814
PspN4I	GGNNCC	2 cut(s)	91, 574
PspPI	GGNCC	1 cut(s)	79
PstI	CTGCAG	1 cut(s)	811
PvuII	CAGCTG	1 cut(s)	776
RsaI	GTAC	2 cut(s)	331, 683
RsaNI	GTAC	2 cut(s)	330, 682
RseI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SaqAI	TTAA	1 cut(s)	414
SatI	GCNGC	9 cut(s)	18, 72, 136, 195, 423, 759, 795, 843, 864
Sau3AI	GATC	2 cut(s)	400, 712
Sau96I	GGNCC	1 cut(s)	79
ScrFI	CCNGG	4 cut(s)	250, 327, 585, 816
SduI	GDGCHC	2 cut(s)	369, 889
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	3 cut(s)	727, 745, 829
SfcI	CTRYAG	2 cut(s)	622, 807
SinI	GGWCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	3 cut(s)	59, 236, 294
SmlI	CTYRAG	1 cut(s)	275
SmoI	CTYRAG	1 cut(s)	275
Sse9I	AATT	2 cut(s)	411, 729
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	6 cut(s)	15, 18, 72, 136, 246, 570
SspI	AATATT	1 cut(s)	692
SspMI	CTAG	2 cut(s)	191, 198
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	4 cut(s)	248, 325, 583, 814
StyI	CCWWGG	1 cut(s)	225
TaaI	ACNGT	1 cut(s)	521
TaiI	ACGT	1 cut(s)	31
TasI	AATT	2 cut(s)	411, 729
TatI	WGTACW	1 cut(s)	681
TauI	GCSGC	3 cut(s)	20, 74, 138
TfiI	GAWTC	1 cut(s)	464
Tru1I	TTAA	1 cut(s)	414
Tru9I	TTAA	1 cut(s)	414
TscAI	CASTG	5 cut(s)	298, 672, 722, 861, 907
TseI	GCWGC	6 cut(s)	194, 422, 758, 794, 842, 863
TspGWI	ACGGA	1 cut(s)	565
TspRI	CASTG	5 cut(s)	298, 672, 722, 861, 907
Van91I	CCANNNNNTGG	1 cut(s)	906
VpaK11BI	GGWCC	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	591
XspI	CTAG	2 cut(s)	191, 198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.