Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

10396144 .. 10399236

Gene Structure 3093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1135400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGTCGGGTCTTCAGAAGCGGCGGCAGCAGCAACCAGTCCCCACGGATGGCGGATTTCTTGAACGACCCCTGATTGAGTCTGATGATATCATAATTGATATACTGTCAAGGCTACCAGTGAAATATTTGATCCAATTGCGGTGTGTATGCAAGTCATGGCGCTCTTTGATCTCTGATTTGCATCTTGTTAGGAAGCACCTGAGACGGGCAGTGACAGGGGTTAACCGTAATAGCTATAGGCTTCTTATTTCAGACAGTCCTTTCCAATCCATAGACTACGAAGCACTCAAGGATGTCAGTGTATGTGTGCAAAGCTCTTTTCTTTGTTTTCAATTGCCAGTAACGCTTGAACGTATGAGTGTTGTGGGTTCTTGCAATGGCTTGATATGTCTAAAAGGAAACAAAGGCGAAGTTCTCTTATGGAACCCTTGTACCAGAGTTACCAAAATGTTACCAGGAATTGCTTGTTTTTATTTTTGTCCAAAGTTTTATGGATTTGGTTATGATTCCACCATTGAAGATTACAAGGTTATATTGGGTGGCGAATCTACAACTGCAGATGGCATGATGATTGCGGTCTTTACACTAAAATCAGGTTTGTGGAGGACTAAACAATACCTTGACTCTTTTAAATTGCATGGGCAAGGGTGCTTGGTTAACGGAGCTCTACATTGGGTAGAGCTTAAATGGAGTGGGGAGGAGCTCCGCCCTGTACTTAGTTCAAGAATCATCTCTTTTATTTTGGCGGAGGAGAATATTGTGCCGCTGCCCTATCTTCACATCCAAAGTTATATCTCCATTCGTATTGGGACTATTGCAAATCGTCTCTTTGCATATTTGTTCAATGACGTCAGTTTGAGTGATATTGCAATAACAGTATGGGTGATGAAGGATTATGGTGTCCATGAATCTTGGACTAAAATCATACAAATTCCTTTGAAGTCGTTACGTCAAATAAGTATGAATTTTGTGAATATTATCTGCATTTTAGAGAATGATGAAGTTTTGATGAGTTGTGATTCAAGTTACTTGGCTTTATACAATCCAAAGGAAAATACATTGACGAAGGTTCTTAAAACTCCTACTAATTTGTTGACTGAAGCAACTATGTATGTGGAGACCTTAGTTTCACCAGTTAGATTTAACTGTTCAGTTAGGTTTGGTACGATGAGGGCGCCCCAATGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

396

Amino Acids

44.84

Weight (kDa)

8.67

Isoelectric Point (pI)

53.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	28 - 64	4.1e-10	F-box domain
F-box-like	PF12937	28 - 67	1.4e-07	F-box-like
FBA_1	PF07734	86 - 376	6.3e-25	F-box associated beta propeller domain
FBA_3	PF08268	110 - 357	2.6e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	852
AccB1I	GGYRCC	1 cut(s)	1174
AciI	CCGC	8 cut(s)	19, 22, 51, 139, 575, 706, 746, 764
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	2 cut(s)	930, 964
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	2 cut(s)	849, 1175
AfaI	GTAC	3 cut(s)	433, 714, 1165
AfiI	CCNNNNNNNGG	2 cut(s)	47, 205
AgsI	TTSAA	8 cut(s)	62, 332, 350, 518, 723, 844, 940, 1023
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	5 cut(s)	234, 315, 665, 682, 703
AluI	AGCT	5 cut(s)	234, 315, 665, 682, 703
Alw21I	GWGCWC	2 cut(s)	667, 705
Alw26I	GTCTC	3 cut(s)	196, 830, 1112
AlwI	GGATC	1 cut(s)	124
ApeKI	GCWGC	3 cut(s)	25, 28, 766
ApoI	RAATTY	2 cut(s)	930, 964
AspLEI	GCGC	2 cut(s)	162, 1177
AsuHPI	GGTGA	2 cut(s)	895, 1122
BaeI	ACNNNNGTAYC	2 cut(s)	415, 448
BanI	GGYRCC	1 cut(s)	1174
BanII	GRGCYC	2 cut(s)	667, 705
BbsI	GAAGAC	1 cut(s)	2
Bbv12I	GWGCWC	2 cut(s)	667, 705
BbvI	GCAGC	3 cut(s)	37, 40, 753
BccI	CCATC	2 cut(s)	41, 554
BciT130I	CCWGG	1 cut(s)	456
BcoDI	GTCTC	3 cut(s)	196, 830, 1112
BfmI	CTRYAG	2 cut(s)	235, 555
BfoI	RGCGCY	2 cut(s)	163, 1178
BisI	GCNGC	6 cut(s)	20, 23, 26, 29, 764, 767
BlsI	GCNGC	6 cut(s)	21, 24, 27, 30, 765, 768
Bme1390I	CCNGG	1 cut(s)	456
BmiI	GGNNCC	2 cut(s)	425, 1176
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	1 cut(s)	190
BpiI	GAAGAC	1 cut(s)	2
BpuEI	CTTGAG	1 cut(s)	272
BsaBI	GATNNNNATC	1 cut(s)	180
BsaHI	GRCGYC	2 cut(s)	849, 1175
BsaI	GGTCTC	1 cut(s)	1112
BsaJI	CCNNGG	1 cut(s)	42
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 205
Bse1I	ACTGG	4 cut(s)	35, 116, 338, 1133
Bse3DI	GCAATG	1 cut(s)	382
Bse8I	GATNNNNATC	1 cut(s)	180
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	42
BseGI	GGATG	3 cut(s)	52, 298, 780
BseJI	GATNNNNATC	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	47, 205
BseMI	GCAATG	1 cut(s)	382
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	4 cut(s)	35, 116, 338, 1133
BseRI	GAGGAG	2 cut(s)	713, 764
BseXI	GCAGC	3 cut(s)	37, 40, 753
BshNI	GGYRCC	1 cut(s)	1174
BsiHKAI	GWGCWC	2 cut(s)	667, 705
BslFI	GGGAC	2 cut(s)	23, 823
BslI	CCNNNNNNNGG	2 cut(s)	47, 205
BsmAI	GTCTC	3 cut(s)	196, 830, 1112
BsmBI	CGTCTC	2 cut(s)	196, 830
BsmFI	GGGAC	2 cut(s)	23, 823
Bso31I	GGTCTC	1 cut(s)	1112
Bsp1286I	GDGCHC	2 cut(s)	667, 705
Bsp143I	GATC	2 cut(s)	129, 168
BspACI	CCGC	8 cut(s)	19, 22, 51, 139, 575, 706, 746, 764
BspCNI	CTCAG	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	425, 1176
BspMAI	CTGCAG	1 cut(s)	559
BspPI	GGATC	1 cut(s)	124
BspT107I	GGYRCC	1 cut(s)	1174
BspTNI	GGTCTC	1 cut(s)	1112
BsrDI	GCAATG	1 cut(s)	382
BsrI	ACTGG	4 cut(s)	35, 116, 338, 1133
BssECI	CCNNGG	1 cut(s)	42
BssMI	GATC	2 cut(s)	129, 168
BssNI	GRCGYC	2 cut(s)	849, 1175
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	5 cut(s)	105, 227, 257, 877, 1148
BstACI	GRCGYC	2 cut(s)	849, 1175
BstDEI	CTNAG	3 cut(s)	200, 716, 1123
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	52, 298, 780
BstH2I	RGCGCY	2 cut(s)	163, 1178
BstHHI	GCGC	2 cut(s)	162, 1177
BstKTI	GATC	2 cut(s)	132, 171
BstMAI	GTCTC	3 cut(s)	196, 830, 1112
BstMBI	GATC	2 cut(s)	129, 168
BstMWI	GCNNNNNNNGC	3 cut(s)	25, 28, 343
BstNI	CCWGG	1 cut(s)	456
BstSCI	CCNGG	1 cut(s)	454
BstSFI	CTRYAG	2 cut(s)	235, 555
BstV1I	GCAGC	3 cut(s)	37, 40, 753
BstV2I	GAAGAC	1 cut(s)	2
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	52, 298, 780
BtsI	GCAGTG	1 cut(s)	216
BtsIMutI	CAGTG	3 cut(s)	123, 216, 304
CfoI	GCGC	2 cut(s)	162, 1177
Csp6I	GTAC	3 cut(s)	432, 713, 1164
CviAII	CATG	4 cut(s)	156, 565, 638, 905
CviJI	RGCY	9 cut(s)	112, 234, 241, 315, 381, 665, 682, 703, 1034
CviKI_1	RGCY	9 cut(s)	112, 234, 241, 315, 381, 665, 682, 703, 1034
CviQI	GTAC	3 cut(s)	432, 713, 1164
DdeI	CTNAG	3 cut(s)	200, 716, 1123
DinI	GGCGCC	1 cut(s)	1176
DpnI	GATC	2 cut(s)	131, 170
DpnII	GATC	2 cut(s)	129, 168
DraI	TTTAAA	1 cut(s)	631
EciI	GGCGGA	3 cut(s)	66, 695, 761
Ecl136II	GAGCTC	2 cut(s)	665, 703
Eco24I	GRGCYC	2 cut(s)	667, 705
Eco31I	GGTCTC	1 cut(s)	1112
Eco32I	GATATC	1 cut(s)	88
Eco53kI	GAGCTC	2 cut(s)	665, 703
Eco57I	CTGAAG	1 cut(s)	1119
EcoICRI	GAGCTC	2 cut(s)	665, 703
EcoRII	CCWGG	1 cut(s)	454
EcoRV	GATATC	1 cut(s)	88
EcoT38I	GRGCYC	2 cut(s)	667, 705
EgeI	GGCGCC	1 cut(s)	1176
EheI	GGCGCC	1 cut(s)	1176
Esp3I	CGTCTC	2 cut(s)	196, 830
FaeI	CATG	4 cut(s)	159, 568, 641, 908
FaqI	GGGAC	2 cut(s)	23, 823
FatI	CATG	4 cut(s)	155, 564, 637, 904
Fnu4HI	GCNGC	6 cut(s)	20, 23, 26, 29, 764, 767
FokI	GGATG	3 cut(s)	59, 305, 767
FriOI	GRGCYC	2 cut(s)	667, 705
Fsp4HI	GCNGC	6 cut(s)	20, 23, 26, 29, 764, 767
GlaI	GCGC	2 cut(s)	161, 1176
GluI	GCNGC	6 cut(s)	20, 23, 26, 29, 764, 767
HaeII	RGCGCY	2 cut(s)	163, 1178
HhaI	GCGC	2 cut(s)	162, 1177
Hin1I	GRCGYC	2 cut(s)	849, 1175
Hin1II	CATG	4 cut(s)	159, 568, 641, 908
Hin6I	GCGC	2 cut(s)	160, 1175
HinP1I	GCGC	2 cut(s)	160, 1175
HincII	GTYRAC	3 cut(s)	223, 658, 1095
HindII	GTYRAC	3 cut(s)	223, 658, 1095
HinfI	GANTC	7 cut(s)	77, 506, 545, 623, 726, 908, 1019
HpaI	GTTAAC	2 cut(s)	223, 658
HphI	GGTGA	2 cut(s)	895, 1122
Hpy166II	GTNNAC	3 cut(s)	223, 658, 1095
Hpy188I	TCNGA	4 cut(s)	15, 82, 175, 253
Hpy188III	TCNNGA	2 cut(s)	59, 723
Hpy8I	GTNNAC	3 cut(s)	223, 658, 1095
HpyAV	CCTTC	2 cut(s)	883, 1060
HpyCH4III	ACNGT	5 cut(s)	105, 227, 257, 877, 1148
HpyCH4IV	ACGT	3 cut(s)	352, 849, 949
HpyF10VI	GCNNNNNNNGC	3 cut(s)	25, 28, 343
HpyF3I	CTNAG	3 cut(s)	200, 716, 1123
HpySE526I	ACGT	3 cut(s)	352, 849, 949
Hsp92I	GRCGYC	2 cut(s)	849, 1175
Hsp92II	CATG	4 cut(s)	159, 568, 641, 908
HspAI	GCGC	2 cut(s)	160, 1175
KasI	GGCGCC	1 cut(s)	1174
KspAI	GTTAAC	2 cut(s)	223, 658
Kzo9I	GATC	2 cut(s)	129, 168
LmnI	GCTCC	3 cut(s)	662, 700, 708
Lsp1109I	GCAGC	3 cut(s)	37, 40, 753
LweI	GCATC	1 cut(s)	190
MaeII	ACGT	3 cut(s)	352, 849, 949
MaeIII	GTNAC	6 cut(s)	211, 340, 439, 450, 945, 1025
MalI	GATC	2 cut(s)	131, 170
MboI	GATC	2 cut(s)	129, 168
MboII	GAAGA	2 cut(s)	530, 767
MfeI	CAATTG	2 cut(s)	134, 332
MhlI	GDGCHC	2 cut(s)	667, 705
MluCI	AATT	8 cut(s)	93, 134, 332, 459, 632, 930, 964, 1087
Mly113I	GGCGCC	1 cut(s)	1175
MlyI	GAGTC	2 cut(s)	86, 617
MnlI	CCTC	4 cut(s)	597, 691, 742, 1164
MseI	TTAA	6 cut(s)	222, 630, 657, 684, 1074, 1143
MspA1I	CMGCKG	1 cut(s)	766
MspR9I	CCNGG	1 cut(s)	456
MunI	CAATTG	2 cut(s)	134, 332
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	3 cut(s)	25, 28, 343
NarI	GGCGCC	1 cut(s)	1175
NdeII	GATC	2 cut(s)	129, 168
NlaIII	CATG	4 cut(s)	159, 568, 641, 908
NlaIV	GGNNCC	2 cut(s)	425, 1176
NmuCI	GTSAC	1 cut(s)	211
PfeI	GAWTC	5 cut(s)	506, 545, 726, 908, 1019
PkrI	GCNGC	6 cut(s)	21, 24, 27, 30, 765, 768
PleI	GAGTC	2 cut(s)	85, 617
PluTI	GGCGCC	1 cut(s)	1178
PpsI	GAGTC	2 cut(s)	85, 617
Psp124BI	GAGCTC	2 cut(s)	667, 705
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	425, 1176
PstI	CTGCAG	1 cut(s)	559
RsaI	GTAC	3 cut(s)	433, 714, 1165
RsaNI	GTAC	3 cut(s)	432, 713, 1164
SacI	GAGCTC	2 cut(s)	667, 705
SaqAI	TTAA	6 cut(s)	222, 630, 657, 684, 1074, 1143
SatI	GCNGC	6 cut(s)	20, 23, 26, 29, 764, 767
Sau3AI	GATC	2 cut(s)	129, 168
SchI	GAGTC	2 cut(s)	86, 617
ScrFI	CCNGG	1 cut(s)	456
SduI	GDGCHC	2 cut(s)	667, 705
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	235, 555
SfoI	GGCGCC	1 cut(s)	1176
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
Sse9I	AATT	8 cut(s)	93, 134, 332, 459, 632, 930, 964, 1087
SsiI	CCGC	8 cut(s)	19, 22, 51, 139, 575, 706, 746, 764
SspDI	GGCGCC	1 cut(s)	1174
SspI	AATATT	3 cut(s)	125, 757, 976
SstI	GAGCTC	2 cut(s)	667, 705
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	5 cut(s)	105, 227, 257, 877, 1148
TaiI	ACGT	3 cut(s)	355, 852, 952
TasI	AATT	8 cut(s)	93, 134, 332, 459, 632, 930, 964, 1087
TatI	WGTACW	1 cut(s)	712
TauI	GCSGC	3 cut(s)	22, 25, 766
TfiI	GAWTC	5 cut(s)	506, 545, 726, 908, 1019
Tru1I	TTAA	6 cut(s)	222, 630, 657, 684, 1074, 1143
Tru9I	TTAA	6 cut(s)	222, 630, 657, 684, 1074, 1143
TscAI	CASTG	3 cut(s)	123, 216, 304
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	25, 28, 766
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	902, 921, 977, 1014
TspGWI	ACGGA	2 cut(s)	59, 675
TspRI	CASTG	3 cut(s)	123, 216, 304
XapI	RAATTY	2 cut(s)	930, 964
ZraI	GACGTC	1 cut(s)	850

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.