Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

68456635 .. 68461303

Gene Structure 4669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0558400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGAAAAGAAACGAACAGATGACAGTGAGTTGGGTCCAGTTCCTCCACTGAGATTGGACAGATTTGGGTTTTTGAAGCAGGAACCATCTCCTAACGGCTTACCCAAGGGCAGGTCAGCCTTTGAATTCGAGAGGGAGGAAAGGAGGGTTAGGAAATGGAGGAAGATGATTGGAGTTGGAGGCAGTGATTGGAAATATTATCTTAGGAGAAAACCTCATGTTGTCAAAAGGAGAATAAGAAAAGGAATTCCTGATTGTTTAAGAGGTCTGGTATGGCAGTTGATCTCTGGAAGTCGGGATCTTTTGTTGATGAACCCTGGTGTTTATGAGCAATTGGTAATTTATGAGACATCAGCTTCAGAGCTGGATATAATTCGAGATATATCGCGTACCTTCCCTTCACATGTTTTCTTCCAGCAGAGACATGGTCCTGGTCAGAGGTCTCTCTACAATGTTTTGAAGGCATACTCTGTCTTTGACAGAGATGTTGGATATGTTCAGGGAATGGGGTTTCTAGCTGGTCTATTGCTTCTTTATATGAGCGAGGAGGATGCATTTTGGTTATTGGTCGCATTACTCAAAGGAGCAGTCCATGCACCAATGGAAGGATTATATCAGGTAGGTCTACCACTGGTACAACAATACCTTTTCCAGTTTGACCAGTTGGTAAGGGAGCAGTTGCCAAAGCTCGGAGAGCATTTTACCCAAGAAACGATAAATCCCAGCATGTATGCAAGCCAGTGGTTCATTACAGTTTTTTCATATTCTTTTCCTTTCCATTTGGCTCTTCGAATTTGGGATGTCTTTCTCTATGAGGGTGTTAAAATCGTTTTTAAAGTTGGTTTGGCCCTATTAAAATATTGCCACGACGACTTGGTAAAATTACCCTTCGAGAAACTTATTCATGCTTTGCGTAACTTCCCCGAGGATGCAATGGACCCTGACACGTTACTTCCAATGGCTTACTCTATCAAGGTATCCAAGTGCTTGGAGGAATTGAAACAGCAGTATGATAAGAAGAATGGGAAGAACCTTCAGCCTACAGAGGATGAGAAGCCGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

354

Amino Acids

41.17

Weight (kDa)

8.98

Isoelectric Point (pI)

46.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	85 - 292	2.8e-60	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	147 - 305	1e-45	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	102
AccI	GTMKAC	1 cut(s)	625
AccII	CGCG	1 cut(s)	388
AclWI	GGATC	1 cut(s)	306
AcsI	RAATTY	3 cut(s)	125, 246, 792
AcuI	CTGAAG	2 cut(s)	342, 1019
AfaI	GTAC	2 cut(s)	391, 636
AfiI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
AflIII	ACRYGT	2 cut(s)	403, 945
AgsI	TTSAA	4 cut(s)	76, 125, 460, 1000
AjnI	CCWGG	2 cut(s)	316, 430
AluBI	AGCT	4 cut(s)	356, 364, 518, 688
AluI	AGCT	4 cut(s)	356, 364, 518, 688
Alw26I	GTCTC	3 cut(s)	341, 415, 447
AlwI	GGATC	1 cut(s)	306
Ama87I	CYCGRG	1 cut(s)	923
AoxI	GGCC	1 cut(s)	846
ApoI	RAATTY	3 cut(s)	125, 246, 792
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspS9I	GGNCC	4 cut(s)	35, 428, 847, 937
AsuII	TTCGAA	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	923
AvaII	GGWCC	3 cut(s)	35, 428, 937
BarI	GAAGNNNNNNTAC	2 cut(s)	382, 414
BccI	CCATC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	533, 567
BciT130I	CCWGG	2 cut(s)	318, 432
BciVI	GTATCC	1 cut(s)	988
BcoDI	GTCTC	3 cut(s)	341, 415, 447
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	1 cut(s)	1041
BfuAI	ACCTGC	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	988
Bme1390I	CCNGG	2 cut(s)	318, 432
Bme18I	GGWCC	3 cut(s)	35, 428, 937
BmeT110I	CYCGRG	1 cut(s)	923
BmgT120I	GGNCC	4 cut(s)	35, 428, 847, 937
BmiI	GGNNCC	3 cut(s)	36, 84, 939
BmrFI	CCNGG	2 cut(s)	318, 432
BmsI	GCATC	2 cut(s)	541, 919
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
Bpu14I	TTCGAA	1 cut(s)	790
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	3 cut(s)	105, 316, 924
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 605, 689
Bse118I	RCCGGY	1 cut(s)	1057
Bse1I	ACTGG	5 cut(s)	38, 636, 652, 661, 739
Bse3DI	GCAATG	1 cut(s)	939
BseBI	CCWGG	2 cut(s)	318, 432
BseDI	CCNNGG	3 cut(s)	105, 316, 924
BseGI	GGATG	4 cut(s)	556, 805, 934, 1054
BseLI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
BseMI	GCAATG	1 cut(s)	939
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	5 cut(s)	38, 636, 652, 661, 739
BseRI	GAGGAG	1 cut(s)	560
BseYI	CCCAGC	1 cut(s)	722
Bsh1236I	CGCG	1 cut(s)	388
BshFI	GGCC	1 cut(s)	848
BsiHKCI	CYCGRG	1 cut(s)	923
BsiSI	CCGG	1 cut(s)	1058
BslI	CCNNNNNNNGG	3 cut(s)	111, 605, 689
BsmAI	GTCTC	3 cut(s)	341, 415, 447
BsnI	GGCC	1 cut(s)	848
Bso31I	GGTCTC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	923
Bsp119I	TTCGAA	1 cut(s)	790
Bsp143I	GATC	2 cut(s)	282, 298
BspANI	GGCC	1 cut(s)	848
BspCNI	CTCAG	1 cut(s)	42
BspFNI	CGCG	1 cut(s)	388
BspLI	GGNNCC	3 cut(s)	36, 84, 939
BspMI	ACCTGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	306
BspQI	GCTCTTC	1 cut(s)	792
BspT104I	TTCGAA	1 cut(s)	790
BspTNI	GGTCTC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	939
BsrFI	RCCGGY	1 cut(s)	1057
BsrI	ACTGG	5 cut(s)	38, 636, 652, 661, 739
BssAI	RCCGGY	1 cut(s)	1057
BssECI	CCNNGG	3 cut(s)	105, 316, 924
BssMI	GATC	2 cut(s)	282, 298
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	318, 432
Bst4CI	ACNGT	2 cut(s)	26, 754
Bst6I	CTCTTC	1 cut(s)	792
BstAPI	GCANNNNNTGC	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	790
BstC8I	GCNNGC	2 cut(s)	736, 1059
BstDEI	CTNAG	2 cut(s)	50, 203
BstF5I	GGATG	4 cut(s)	556, 805, 934, 1054
BstFNI	CGCG	1 cut(s)	388
BstKTI	GATC	2 cut(s)	285, 301
BstMAI	GTCTC	3 cut(s)	341, 415, 447
BstMBI	GATC	2 cut(s)	282, 298
BstMWI	GCNNNNNNNGC	2 cut(s)	593, 694
BstNI	CCWGG	2 cut(s)	318, 432
BstNSI	RCATGY	2 cut(s)	407, 730
BstSCI	CCNGG	2 cut(s)	316, 430
BstSFI	CTRYAG	1 cut(s)	1041
BstUI	CGCG	1 cut(s)	388
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	988
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	1 cut(s)	848
BtsCI	GGATG	4 cut(s)	556, 805, 934, 1054
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	5 cut(s)	31, 47, 190, 629, 746
BveI	ACCTGC	1 cut(s)	102
Cac8I	GCNNGC	2 cut(s)	736, 1059
Cfr10I	RCCGGY	1 cut(s)	1057
Cfr13I	GGNCC	4 cut(s)	35, 428, 847, 937
Csp6I	GTAC	2 cut(s)	390, 635
CspCI	CAANNNNNGTGG	2 cut(s)	36, 71
CviAII	CATG	6 cut(s)	218, 404, 425, 593, 727, 905
CviQI	GTAC	2 cut(s)	390, 635
DdeI	CTNAG	2 cut(s)	50, 203
DpnI	GATC	2 cut(s)	284, 300
DpnII	GATC	2 cut(s)	282, 298
DraI	TTTAAA	1 cut(s)	835
Eam1104I	CTCTTC	1 cut(s)	792
EarI	CTCTTC	1 cut(s)	792
Eco130I	CCWWGG	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	447
Eco47I	GGWCC	3 cut(s)	35, 428, 937
Eco57I	CTGAAG	2 cut(s)	342, 1019
Eco88I	CYCGRG	1 cut(s)	923
EcoRI	GAATTC	2 cut(s)	125, 246
EcoRII	CCWGG	2 cut(s)	316, 430
EcoT14I	CCWWGG	1 cut(s)	105
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	6 cut(s)	221, 407, 428, 596, 730, 908
FatI	CATG	6 cut(s)	217, 403, 424, 592, 726, 904
FblI	GTMKAC	1 cut(s)	625
FokI	GGATG	4 cut(s)	563, 812, 941, 1061
FspBI	CTAG	1 cut(s)	515
GsaI	CCCAGC	1 cut(s)	726
HaeIII	GGCC	1 cut(s)	848
HapII	CCGG	1 cut(s)	1058
Hin1II	CATG	6 cut(s)	221, 407, 428, 596, 730, 908
HpaII	CCGG	1 cut(s)	1058
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	3 cut(s)	361, 438, 692
Hpy188III	TCNNGA	6 cut(s)	130, 251, 288, 296, 377, 892
Hpy8I	GTNNAC	1 cut(s)	626
Hpy99I	CGWCG	1 cut(s)	872
HpyAV	CCTTC	6 cut(s)	403, 408, 454, 599, 898, 1043
HpyCH4III	ACNGT	2 cut(s)	26, 754
HpyCH4IV	ACGT	1 cut(s)	947
HpyCH4V	TGCA	4 cut(s)	554, 596, 734, 932
HpyF10VI	GCNNNNNNNGC	2 cut(s)	593, 694
HpyF3I	CTNAG	2 cut(s)	50, 203
HpySE526I	ACGT	1 cut(s)	947
Hsp92II	CATG	6 cut(s)	221, 407, 428, 596, 730, 908
KroI	GCCGGC	1 cut(s)	1057
KroNI	GCCGGC	1 cut(s)	1059
Kzo9I	GATC	2 cut(s)	282, 298
LguI	GCTCTTC	1 cut(s)	792
LmnI	GCTCC	2 cut(s)	584, 673
LweI	GCATC	2 cut(s)	541, 919
MaeI	CTAG	1 cut(s)	515
MaeII	ACGT	1 cut(s)	947
MaeIII	GTNAC	2 cut(s)	914, 948
MalI	GATC	2 cut(s)	284, 300
MboI	GATC	2 cut(s)	282, 298
MboII	GAAGA	5 cut(s)	175, 403, 779, 1030, 1039
MfeI	CAATTG	1 cut(s)	332
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	8 cut(s)	125, 246, 332, 339, 372, 792, 881, 995
MmeI	TCCRAC	2 cut(s)	157, 469
Mph1103I	ATGCAT	1 cut(s)	556
MroNI	GCCGGC	1 cut(s)	1057
MseI	TTAA	5 cut(s)	260, 822, 834, 854, 1063
MspI	CCGG	1 cut(s)	1058
MspR9I	CCNGG	2 cut(s)	318, 432
MunI	CAATTG	1 cut(s)	332
MvaI	CCWGG	2 cut(s)	318, 432
MvnI	CGCG	1 cut(s)	388
MwoI	GCNNNNNNNGC	2 cut(s)	593, 694
NaeI	GCCGGC	1 cut(s)	1059
NdeII	GATC	2 cut(s)	282, 298
NgoMIV	GCCGGC	1 cut(s)	1057
NlaIII	CATG	6 cut(s)	221, 407, 428, 596, 730, 908
NlaIV	GGNNCC	3 cut(s)	36, 84, 939
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	407, 730
NspV	TTCGAA	1 cut(s)	790
PciI	ACATGT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	792
PdiI	GCCGGC	1 cut(s)	1059
PflFI	GACNNNGTC	1 cut(s)	426
PscI	ACATGT	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	316, 430
PspFI	CCCAGC	1 cut(s)	722
PspGI	CCWGG	2 cut(s)	316, 430
PspN4I	GGNNCC	3 cut(s)	36, 84, 939
PspPI	GGNCC	4 cut(s)	35, 428, 847, 937
PsuI	RGATCY	1 cut(s)	298
PsyI	GACNNNGTC	1 cut(s)	426
RsaI	GTAC	2 cut(s)	391, 636
RsaNI	GTAC	2 cut(s)	390, 635
SapI	GCTCTTC	1 cut(s)	792
SaqAI	TTAA	5 cut(s)	260, 822, 834, 854, 1063
Sau3AI	GATC	2 cut(s)	282, 298
Sau96I	GGNCC	4 cut(s)	35, 428, 847, 937
ScrFI	CCNGG	2 cut(s)	318, 432
SfaNI	GCATC	2 cut(s)	541, 919
SfcI	CTRYAG	1 cut(s)	1041
SfuI	TTCGAA	1 cut(s)	790
SinI	GGWCC	3 cut(s)	35, 428, 937
Sse9I	AATT	8 cut(s)	125, 246, 332, 339, 372, 792, 881, 995
SspI	AATATT	2 cut(s)	197, 860
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	2 cut(s)	316, 430
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	26, 754
TaiI	ACGT	1 cut(s)	950
TaqI	TCGA	4 cut(s)	129, 376, 790, 891
TasI	AATT	8 cut(s)	125, 246, 332, 339, 372, 792, 881, 995
Tru1I	TTAA	5 cut(s)	260, 822, 834, 854, 1063
Tru9I	TTAA	5 cut(s)	260, 822, 834, 854, 1063
TscAI	CASTG	5 cut(s)	31, 54, 190, 636, 746
TspDTI	ATGAA	4 cut(s)	326, 736, 750, 893
TspRI	CASTG	5 cut(s)	31, 54, 190, 636, 746
Tth111I	GACNNNGTC	1 cut(s)	426
VpaK11BI	GGWCC	3 cut(s)	35, 428, 937
XapI	RAATTY	3 cut(s)	125, 246, 792
XceI	RCATGY	2 cut(s)	407, 730
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422
XmiI	GTMKAC	1 cut(s)	625
XspI	CTAG	1 cut(s)	515
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.