Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

23908479 .. 23909651

Gene Structure 1173 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30949

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGGGGAACATCATCTTCATCTCTTTATCATGCTATGGCGTTCTTTCCCGTTGCTGGGATTCCATCACCAGACGAGCGACATATGTAGGGCTTGAAGGTGCTTTGAGCAACCCCTCTCCCTCATGGGATGGTTATATTAACGATGACCTAATTGTTGAGATACTGTCGCGGCTTCCAGCCAAATCTTTACTACGGTTTCGTTGTGTATGCAAGTCATGGCTTGCTTTGATCTCTGATCCCTATTTTGCTAGGAAGCACATCAGCACATACAACAACAGGTTGAAGCTTCTTGAGACAGTCAATCCCACCAGATCCATAGACTTCGAAGCAATATTAAAGGATGACGATCGGGTGGGATATACCGTCCTACCAGAAGCACCAAGATTATGGGTTCTGGGTTCCTGCAATGGCTTGATATGCCGGGAAGAAGACGAGGGAGGTGATCTTATCTTATGGAACCCTTCTACTCAAGATACATACAAGTTACCGGAACAAATTAAAACTAGAAATCGTCAGTTTTTTGGATTTGGTTATGATTCCACCAATGAAGATTACAAGGTCATAGTAGGCCTTGAAACCGAAATTACAGTCTTTACATTAAAAACCGGCTCATGGAAGATTGTTGAACAGTCCGAGTACGTTGGAAGGTTTTGTGGGGAGGGGTGCTTATTGAACGGAGCTCTACATTGGCTAGAGGACAGTCGGTCAAAATTCACAATAATCTCTTTTGATCTGGTGGAGGAGAAATTTCAGGAGTTGCCACCACCCGATATTTGGAGGAGGAAAGAAGTCTCCCTTGGTATTGGGAAAACTATTGGCAACTGTCTCTTCCTATATCTTTATGATTACAAGCGTCATACATCCCAAACAGGTATTGCATTTACAATATGGGTGCTGAACGAATATGGGGTGAATGAATCTTGGACTATAGTTGTTCAAATTCCTTCTTCTAGTCTATCTCCTTGTCATATTTTTGATTATGAACCGATTTTGGTTTTAGAGGATGATAAAGTTTTGATGAATCGGATCAGCAATAGAAGCGAGTGGAACCAATTGGTATTGTATAATCCCAAGGAAAACCGTCAAAAGAAATATAGGCGTCTTATTCATGACTATTACATAATGCCCAAATTATACGTGGAGACTTTAGTATCGCCAAAAACAGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

390

Amino Acids

45.13

Weight (kDa)

6.06

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	48 - 83	1.6e-10	F-box domain
F-box-like	PF12937	48 - 85	2.5e-08	F-box-like
FBA_3	PF08268	129 - 364	1.5e-19	F-box associated beta propeller domain
FBA_1	PF07734	132 - 359	3.7e-23	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	230, 306, 1034
AcsI	RAATTY	3 cut(s)	710, 746, 939
AcyI	GRCGYC	1 cut(s)	1099
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1163
AgsI	TTSAA	6 cut(s)	95, 283, 575, 626, 673, 938
AhdI	GACNNNNNGTC	1 cut(s)	703
AjuI	GAANNNNNNNTTGG	2 cut(s)	780, 812
AluBI	AGCT	2 cut(s)	286, 680
AluI	AGCT	2 cut(s)	286, 680
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	287, 796, 830, 1136
AlwI	GGATC	3 cut(s)	230, 306, 1034
AoxI	GGCC	1 cut(s)	568
ApoI	RAATTY	3 cut(s)	710, 746, 939
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	58, 452, 922
AsuII	TTCGAA	1 cut(s)	324
BaeI	ACNNNNGTAYC	2 cut(s)	1134, 1167
BanII	GRGCYC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	682
BccI	CCATC	2 cut(s)	71, 122
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	287, 796, 830, 1136
BfaI	CTAG	4 cut(s)	249, 504, 692, 951
BfmI	CTRYAG	1 cut(s)	927
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmiI	GGNNCC	3 cut(s)	400, 458, 1049
BmrFI	CCNGG	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	2 cut(s)	311, 453
BpuMI	CCSGG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	1138
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	1099
BsaJI	CCNNGG	2 cut(s)	796, 1071
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1163
Bse118I	RCCGGY	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	796, 1071
BseGI	GGATG	4 cut(s)	133, 346, 860, 1009
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1163
BseMI	GCAATG	1 cut(s)	412
BseRI	GAGGAG	2 cut(s)	755, 793
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	3 cut(s)	421, 488, 606
BslI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1163
BsmAI	GTCTC	4 cut(s)	287, 796, 830, 1136
BsnI	GGCC	1 cut(s)	570
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	1108
BspLI	GGNNCC	3 cut(s)	400, 458, 1049
BspPI	GGATC	3 cut(s)	230, 306, 1034
BspT104I	TTCGAA	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	796, 1071
BssMI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
BssNI	GRCGYC	1 cut(s)	1099
BssT1I	CCWWGG	2 cut(s)	796, 1071
Bst4CI	ACNGT	9 cut(s)	165, 195, 298, 364, 589, 630, 701, 824, 1082
Bst6I	CTCTTC	1 cut(s)	833
BstACI	GRCGYC	1 cut(s)	1099
BstBAI	YACGTR	1 cut(s)	1138
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	222
BstF5I	GGATG	4 cut(s)	133, 346, 860, 1009
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	7 cut(s)	231, 238, 314, 349, 445, 733, 1029
BstMAI	GTCTC	4 cut(s)	287, 796, 830, 1136
BstMBI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 1038
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	927
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	4 cut(s)	133, 346, 860, 1009
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	1108
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	2 cut(s)	842, 1088
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	5 cut(s)	30, 123, 216, 612, 1109
CviQI	GTAC	1 cut(s)	637
DpnI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1028
DpnII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
DriI	GACNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	833
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	833
Ecl136II	GAGCTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	796, 1071
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	680
EcoICRI	GAGCTC	1 cut(s)	680
EcoT14I	CCWWGG	2 cut(s)	796, 1071
EcoT38I	GRGCYC	1 cut(s)	682
ErhI	CCWWGG	2 cut(s)	796, 1071
FaeI	CATG	5 cut(s)	33, 126, 219, 615, 1112
FalI	AAGNNNNNCTT	2 cut(s)	780, 812
FatI	CATG	5 cut(s)	29, 122, 215, 611, 1108
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	4 cut(s)	140, 353, 847, 1016
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	4 cut(s)	249, 504, 692, 951
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	3 cut(s)	421, 488, 606
HgaI	GACGC	2 cut(s)	842, 1088
Hin1I	GRCGYC	1 cut(s)	1099
Hin1II	CATG	5 cut(s)	33, 126, 219, 615, 1112
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	59, 536, 917, 1021
HpaII	CCGG	3 cut(s)	421, 488, 606
HphI	GGTGA	3 cut(s)	58, 452, 922
Hpy188I	TCNGA	3 cut(s)	235, 634, 1026
Hpy188III	TCNNGA	4 cut(s)	290, 470, 752, 1109
HpyAV	CCTTC	4 cut(s)	89, 471, 639, 954
HpyCH4III	ACNGT	9 cut(s)	165, 195, 298, 364, 589, 630, 701, 824, 1082
HpyCH4IV	ACGT	2 cut(s)	639, 1137
HpyCH4V	TGCA	3 cut(s)	210, 405, 878
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 1038
HpySE526I	ACGT	2 cut(s)	639, 1137
Hsp92I	GRCGYC	1 cut(s)	1099
Hsp92II	CATG	5 cut(s)	33, 126, 219, 615, 1112
Kzo9I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
LmnI	GCTCC	1 cut(s)	677
MaeI	CTAG	4 cut(s)	249, 504, 692, 951
MaeII	ACGT	2 cut(s)	639, 1137
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1028
MboI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
MboII	GAAGA	7 cut(s)	7, 437, 440, 560, 628, 820, 939
MfeI	CAATTG	1 cut(s)	1052
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	8 cut(s)	150, 495, 582, 710, 746, 939, 1052, 1130
MmeI	TCCRAC	1 cut(s)	622
MseI	TTAA	4 cut(s)	138, 335, 498, 599
MspI	CCGG	3 cut(s)	421, 488, 606
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	1052
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	417, 1038
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
NlaIII	CATG	5 cut(s)	33, 126, 219, 615, 1112
NlaIV	GGNNCC	3 cut(s)	400, 458, 1049
NspV	TTCGAA	1 cut(s)	324
PagI	TCATGA	1 cut(s)	1108
PceI	AGGCCT	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	59, 536, 917, 1021
PkrI	GCNGC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	349
Ppu21I	YACGTR	1 cut(s)	1138
Psp124BI	GAGCTC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	400, 458, 1049
PsuI	RGATCY	1 cut(s)	311
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	4 cut(s)	138, 335, 498, 599
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1026
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	927
SfuI	TTCGAA	1 cut(s)	324
SmlI	CTYRAG	2 cut(s)	290, 468
SmoI	CTYRAG	2 cut(s)	290, 468
Sse9I	AATT	8 cut(s)	150, 495, 582, 710, 746, 939, 1052, 1130
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	1 cut(s)	333
SspMI	CTAG	4 cut(s)	249, 504, 692, 951
SstI	GAGCTC	1 cut(s)	682
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	796, 1071
TaaI	ACNGT	9 cut(s)	165, 195, 298, 364, 589, 630, 701, 824, 1082
TaiI	ACGT	2 cut(s)	642, 1140
TaqI	TCGA	1 cut(s)	324
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	8 cut(s)	150, 495, 582, 710, 746, 939, 1052, 1130
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	4 cut(s)	59, 536, 917, 1021
Tru1I	TTAA	4 cut(s)	138, 335, 498, 599
Tru9I	TTAA	4 cut(s)	138, 335, 498, 599
TspDTI	ATGAA	6 cut(s)	7, 561, 930, 996, 1034, 1097
TspGWI	ACGGA	1 cut(s)	690
XapI	RAATTY	3 cut(s)	710, 746, 939
XcmI	CCANNNNNNNNNTGG	2 cut(s)	771, 1135
XspI	CTAG	4 cut(s)	249, 504, 692, 951

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.