Rroxscaffold_6G00426490

F-box kelch-repeat protein

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
Physical Location & Seq
Forward (+)
47221031 .. 47222485
1455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00426490.1

Sequence Viewer

Length: 1455 bp
ATGGCAAAGGAGCTTGAACACACATCCAATGTAGGGCTTGAAGGAGCTTTGAGCAGTCCCTCTCCCTCATGGGCTGGTGGTTTTGACGATGAACTAATTGCTCATGAGATACTGTCGCGGCTTCCGGTCAAATCTTTAGTACGGTTTCGTTGTGTATGCAAGTCGTGGCTTGCTCTAACCTCTGATCCCAAATTTGCTAGGGAGCACGCCAGCAGGGCCGGCAGCAGGTTGAAGCTGCTTGAGACAGTCAATCCCACCAGATCCATAGACTTCAGAGCAATATTAGACGATGATGATCGGGTGGATTATGCCGTTCTACCAGAAGTGCCAAGTTTATGTGTCCTGGGTTCCTGCAATGGCTTGATATGCCGGGAAGAAGTCGGCTTGATTTGCCAAGAAGAAGTTGACGACGGGTTGATGTTGCAACAAGACGAGGAAGAAGTGGAGGGAGAGGAAGAGAAAGAGGAAAAGGAAGACGAAGAGGAAGACGAGGAGGAAGAAGAGGAGAAAGAGGAAAAGGAAAACGAAGAAGAGGAAGACGAGGAGGAGAACGACGATGATCGTGATCTTATCATATGGAATCCTTCTACTCAAGATACATACAAGTTACCCAAAATCAAAATAATTTGTCGCCGCGACCGCGACTTTTATGGATTTGGATATGATTCCACCAATGAAGATTACAAGGTTATAATAGGCCTTAACAACAGTGAAAGTGGAAGTGACTGGGAAAGTGGAAGTGACTGGGAAACTGAAAGTGACTGGGAAACTGAAATTAGGGCTTCCAATCTCCCAACAGCCACACTTACAGTCTTTACATCAAAAACAGGTTCATGGAAGATAGTTCAAAATCTCAACAACGTTGGAGAGTGCTATGGGCCGGGGCGCTTATTGAACGGAGCTCTACATTGGCTAGAGCACAGCTTTTCAAGATTCACAATCATCTCTTTTGATCTAGCCGAGGAGAAATTTCAACGTTTATTGTCACCACCCGATATTTGCACGACAGAAAGAACCATCGACGTTGGGATTGGGACGACTATTGGGAATTCACTCTTCCTATATGTTTACGATTGGGGGCGTCATGAATTGCAAACAGGTATTGCGATAACAATATGGGTGATGAAAGAATATGGGGTTAATGAATCCTGGACTAGAACTGTTCAGATTCCTTCTTTAAGTTTATCTCCGCATCTTGAGTTCCGTTACAGACCGATTTTGATTTTAGAGAATGGTAAAGTTTTGATGAAGCGGATCAGCCATAGCACCCTGACTTGGATTTTAGAGAATGGTAAAAAAGTTTCGAAGATGAGCAGCGAGAGGAGGCAGCTGGTGTTGTATGATCCTGAGGAAAACAGTCAAAAGGAATATAGACGTCTTCTTCATGACTATGACTATTGCAACTCGCCCGTATTATACCTGGAGACTTTAGCGTCACCAAATATCGGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

484

Amino Acids

55.47

Weight (kDa)

4.52

Isoelectric Point (pI)

53.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 33 - 65 2.5e-08 F-box domain
F-box-like PF12937 33 - 65 1.5e-06 F-box-like
FBA_1 PF07734 186 - 437 1.2e-19 F-box associated beta propeller domain
FBA_3 PF08268 188 - 347 1e-12 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 692
AasI GACNNNNNNGTC 1 cut(s) 1432
AatII GACGTC 1 cut(s) 1378
Acc36I ACCTGC 1 cut(s) 216
AccII CGCG 3 cut(s) 118, 636, 642
AciI CCGC 5 cut(s) 118, 634, 640, 1190, 1252
AclI AACGTT 2 cut(s) 861, 976
AclWI GGATC 4 cut(s) 179, 255, 1262, 1337
AcsI RAATTY 3 cut(s) 191, 968, 1048
AcuI CTGAAG 1 cut(s) 256
AcyI GRCGYC 2 cut(s) 1081, 1375
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 4 cut(s) 33, 225, 1275, 1445
AgsI TTSAA 7 cut(s) 17, 41, 232, 848, 895, 930, 974
AjnI CCWGG 3 cut(s) 342, 1148, 1419
AluBI AGCT 7 cut(s) 13, 47, 235, 902, 924, 1330, 1452
AluI AGCT 7 cut(s) 13, 47, 235, 902, 924, 1330, 1452
Alw21I GWGCWC 3 cut(s) 207, 904, 921
Alw26I GTCTC 2 cut(s) 236, 1418
AlwI GGATC 4 cut(s) 179, 255, 1262, 1337
AoxI GGCC 3 cut(s) 216, 697, 878
ApeKI GCWGC 4 cut(s) 222, 235, 1314, 1327
ApoI RAATTY 3 cut(s) 191, 968, 1048
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 2 cut(s) 216, 878
AsuC2I CCSGG 2 cut(s) 371, 882
AsuHPI GGTGA 3 cut(s) 978, 1132, 1428
AsuII TTCGAA 1 cut(s) 1304
AxyI CCTNAGG 1 cut(s) 1347
BanII GRGCYC 1 cut(s) 904
BbsI GAAGAC 4 cut(s) 480, 492, 543, 1370
Bbv12I GWGCWC 3 cut(s) 207, 904, 921
BbvI GCAGC 4 cut(s) 222, 234, 1326, 1339
BccI CCATC 1 cut(s) 1025
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 3 cut(s) 344, 1150, 1421
BcnI CCSGG 2 cut(s) 371, 882
BcoDI GTCTC 2 cut(s) 236, 1418
BfaI CTAG 5 cut(s) 198, 914, 956, 1155, 1453
BfoI RGCGCY 1 cut(s) 889
BfuAI ACCTGC 1 cut(s) 216
BglI GCCNNNNNGGC 1 cut(s) 215
BisI GCNGC 6 cut(s) 119, 223, 236, 634, 1315, 1328
BlsI GCNGC 6 cut(s) 120, 224, 237, 635, 1316, 1329
Bme1390I CCNGG 5 cut(s) 344, 371, 882, 1150, 1421
BmgT120I GGNCC 2 cut(s) 216, 878
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 5 cut(s) 344, 371, 882, 1150, 1421
BmrI ACTGGG 3 cut(s) 736, 754, 772
BmsI GCATC 1 cut(s) 1201
BmuI ACTGGG 3 cut(s) 736, 754, 772
BpiI GAAGAC 4 cut(s) 480, 492, 543, 1370
BpmI CTGGAG 1 cut(s) 1442
Bpu14I TTCGAA 1 cut(s) 1304
BpuEI CTTGAG 3 cut(s) 260, 576, 1217
BpuMI CCSGG 2 cut(s) 371, 882
BsaBI GATNNNNATC 2 cut(s) 294, 564
BsaHI GRCGYC 2 cut(s) 1081, 1375
BsaJI CCNNGG 3 cut(s) 343, 881, 960
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 4 cut(s) 33, 225, 1275, 1445
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 731, 749, 767
Bse21I CCTNAGG 1 cut(s) 1347
Bse3DI GCAATG 1 cut(s) 361
Bse8I GATNNNNATC 2 cut(s) 294, 564
BseBI CCWGG 3 cut(s) 344, 1150, 1421
BseDI CCNNGG 3 cut(s) 343, 881, 960
BseGI GGATG 1 cut(s) 23
BseJI GATNNNNATC 2 cut(s) 294, 564
BseLI CCNNNNNNNGG 4 cut(s) 33, 225, 1275, 1445
BseMI GCAATG 1 cut(s) 361
BseMII CTCAG 1 cut(s) 1338
BseNI ACTGG 3 cut(s) 731, 749, 767
BseRI GAGGAG 6 cut(s) 506, 518, 557, 560, 977, 1336
BseXI GCAGC 4 cut(s) 222, 234, 1326, 1339
Bsh1236I CGCG 3 cut(s) 118, 636, 642
Bsh1285I CGRYCG 1 cut(s) 640
BshFI GGCC 3 cut(s) 218, 699, 880
BsiEI CGRYCG 1 cut(s) 640
BsiHKAI GWGCWC 3 cut(s) 207, 904, 921
BsiSI CCGG 4 cut(s) 125, 219, 370, 881
BslFI GGGAC 2 cut(s) 42, 1048
BslI CCNNNNNNNGG 4 cut(s) 33, 225, 1275, 1445
BsmAI GTCTC 2 cut(s) 236, 1418
BsmFI GGGAC 2 cut(s) 42, 1048
BsnI GGCC 3 cut(s) 218, 699, 880
Bsp119I TTCGAA 1 cut(s) 1304
Bsp1286I GDGCHC 3 cut(s) 207, 904, 921
Bsp143I GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
BspACI CCGC 5 cut(s) 118, 634, 640, 1190, 1252
BspANI GGCC 3 cut(s) 218, 699, 880
BspCNI CTCAG 1 cut(s) 1339
BspFNI CGCG 3 cut(s) 118, 636, 642
BspHI TCATGA 3 cut(s) 103, 1084, 1384
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 4 cut(s) 179, 255, 1262, 1337
BspT104I TTCGAA 1 cut(s) 1304
BsrDI GCAATG 1 cut(s) 361
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 3 cut(s) 731, 749, 767
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 343, 881, 960
BssMI GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
BssNI GRCGYC 2 cut(s) 1081, 1375
Bst2UI CCWGG 3 cut(s) 344, 1150, 1421
Bst4CI ACNGT 7 cut(s) 114, 144, 247, 710, 811, 1162, 1358
Bst6I CTCTTC 5 cut(s) 450, 474, 495, 525, 1061
BstACI GRCGYC 2 cut(s) 1081, 1375
BstBI TTCGAA 1 cut(s) 1304
BstC8I GCNNGC 4 cut(s) 171, 207, 211, 220
BstDEI CTNAG 1 cut(s) 1347
BstF5I GGATG 1 cut(s) 23
BstFNI CGCG 3 cut(s) 118, 636, 642
BstH2I RGCGCY 1 cut(s) 889
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 8 cut(s) 187, 263, 298, 562, 568, 955, 1257, 1345
BstMAI GTCTC 2 cut(s) 236, 1418
BstMBI GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
BstMCI CGRYCG 1 cut(s) 640
BstMWI GCNNNNNNNGC 5 cut(s) 215, 219, 366, 390, 639
BstNI CCWGG 3 cut(s) 344, 1150, 1421
BstSCI CCNGG 5 cut(s) 342, 369, 880, 1148, 1419
BstUI CGCG 3 cut(s) 118, 636, 642
BstV1I GCAGC 4 cut(s) 222, 234, 1326, 1339
BstV2I GAAGAC 4 cut(s) 480, 492, 543, 1370
BstX2I RGATCY 1 cut(s) 260
BstYI RGATCY 1 cut(s) 260
Bsu36I CCTNAGG 1 cut(s) 1347
BsuRI GGCC 3 cut(s) 218, 699, 880
BtsCI GGATG 1 cut(s) 23
BtsIMutI CAGTG 1 cut(s) 715
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 4 cut(s) 171, 207, 211, 220
CciI TCATGA 3 cut(s) 103, 1084, 1384
CfoI GCGC 1 cut(s) 888
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 2 cut(s) 216, 878
CseI GACGC 2 cut(s) 1070, 1422
Csp6I GTAC 1 cut(s) 140
CviAII CATG 5 cut(s) 69, 104, 834, 1085, 1385
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 1 cut(s) 1347
DpnI GATC 8 cut(s) 186, 262, 297, 561, 567, 954, 1256, 1344
DpnII GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
DrdI GACNNNNNNGTC 1 cut(s) 1432
DseDI GACNNNNNNGTC 1 cut(s) 1432
Eam1104I CTCTTC 5 cut(s) 450, 474, 495, 525, 1061
EarI CTCTTC 5 cut(s) 450, 474, 495, 525, 1061
Ecl136II GAGCTC 1 cut(s) 902
Eco147I AGGCCT 1 cut(s) 699
Eco24I GRGCYC 1 cut(s) 904
Eco53kI GAGCTC 1 cut(s) 902
Eco57I CTGAAG 1 cut(s) 256
Eco81I CCTNAGG 1 cut(s) 1347
EcoICRI GAGCTC 1 cut(s) 902
EcoRI GAATTC 1 cut(s) 1048
EcoRII CCWGG 3 cut(s) 342, 1148, 1419
EcoT38I GRGCYC 1 cut(s) 904
FaeI CATG 5 cut(s) 72, 107, 837, 1088, 1388
FaqI GGGAC 2 cut(s) 42, 1048
FatI CATG 5 cut(s) 68, 103, 833, 1084, 1384
FauNDI CATATG 1 cut(s) 575
Fnu4HI GCNGC 6 cut(s) 119, 223, 236, 634, 1315, 1328
FokI GGATG 1 cut(s) 10
FriOI GRGCYC 1 cut(s) 904
Fsp4HI GCNGC 6 cut(s) 119, 223, 236, 634, 1315, 1328
FspBI CTAG 5 cut(s) 198, 914, 956, 1155, 1453
GlaI GCGC 1 cut(s) 887
GluI GCNGC 6 cut(s) 119, 223, 236, 634, 1315, 1328
GsuI CTGGAG 1 cut(s) 1442
HaeII RGCGCY 1 cut(s) 889
HaeIII GGCC 3 cut(s) 218, 699, 880
HapII CCGG 4 cut(s) 125, 219, 370, 881
HgaI GACGC 2 cut(s) 1070, 1422
HhaI GCGC 1 cut(s) 888
Hin1I GRCGYC 2 cut(s) 1081, 1375
Hin1II CATG 5 cut(s) 72, 107, 837, 1088, 1388
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HincII GTYRAC 1 cut(s) 406
HindII GTYRAC 1 cut(s) 406
HinfI GANTC 5 cut(s) 580, 665, 933, 1145, 1168
HpaII CCGG 4 cut(s) 125, 219, 370, 881
HphI GGTGA 3 cut(s) 978, 1132, 1428
Hpy166II GTNNAC 2 cut(s) 406, 1069
Hpy188I TCNGA 3 cut(s) 184, 275, 1167
Hpy188III TCNNGA 8 cut(s) 104, 563, 593, 930, 1085, 1196, 1346, 1385
Hpy8I GTNNAC 2 cut(s) 406, 1069
Hpy99I CGWCG 3 cut(s) 413, 557, 1025
HpyAV CCTTC 3 cut(s) 35, 594, 1182
HpyCH4III ACNGT 7 cut(s) 114, 144, 247, 710, 811, 1162, 1358
HpyCH4IV ACGT 4 cut(s) 861, 976, 1023, 1375
HpyCH4V TGCA 6 cut(s) 159, 354, 424, 1002, 1093, 1401
HpyF10VI GCNNNNNNNGC 5 cut(s) 215, 219, 366, 390, 639
HpyF3I CTNAG 1 cut(s) 1347
HpySE526I ACGT 4 cut(s) 861, 976, 1023, 1375
Hsp92I GRCGYC 2 cut(s) 1081, 1375
Hsp92II CATG 5 cut(s) 72, 107, 837, 1088, 1388
HspAI GCGC 1 cut(s) 886
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
LmnI GCTCC 4 cut(s) 10, 44, 202, 899
Lsp1109I GCAGC 4 cut(s) 222, 234, 1326, 1339
LweI GCATC 1 cut(s) 1201
MaeI CTAG 5 cut(s) 198, 914, 956, 1155, 1453
MaeII ACGT 4 cut(s) 861, 976, 1023, 1375
MaeIII GTNAC 7 cut(s) 606, 722, 740, 758, 984, 1205, 1434
MalI GATC 8 cut(s) 186, 262, 297, 561, 567, 954, 1256, 1344
MboI GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
MflI RGATCY 1 cut(s) 260
MhlI GDGCHC 3 cut(s) 207, 904, 921
MluCI AATT 7 cut(s) 96, 191, 624, 774, 968, 1048, 1088
MmeI TCCRAC 1 cut(s) 844
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 3 cut(s) 702, 1140, 1178
MslI CAYNNNNRTG 1 cut(s) 1389
MspA1I CMGCKG 1 cut(s) 1330
MspI CCGG 4 cut(s) 125, 219, 370, 881
MspR9I CCNGG 5 cut(s) 344, 371, 882, 1150, 1421
MvaI CCWGG 3 cut(s) 344, 1150, 1421
MvnI CGCG 3 cut(s) 118, 636, 642
MwoI GCNNNNNNNGC 5 cut(s) 215, 219, 366, 390, 639
NaeI GCCGGC 1 cut(s) 220
NciI CCSGG 2 cut(s) 371, 882
NdeI CATATG 1 cut(s) 575
NdeII GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 5 cut(s) 72, 107, 837, 1088, 1388
NlaIV GGNNCC 1 cut(s) 349
NmeAIII GCCGAG 1 cut(s) 985
NmuCI GTSAC 5 cut(s) 722, 740, 758, 984, 1434
NspV TTCGAA 1 cut(s) 1304
PagI TCATGA 3 cut(s) 103, 1084, 1384
PceI AGGCCT 1 cut(s) 699
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 5 cut(s) 580, 665, 933, 1145, 1168
PfoI TCCNGGA 1 cut(s) 1148
PkrI GCNGC 6 cut(s) 120, 224, 237, 635, 1316, 1329
PsiI TTATAA 1 cut(s) 692
Psp124BI GAGCTC 1 cut(s) 904
Psp1406I AACGTT 2 cut(s) 861, 976
Psp6I CCWGG 3 cut(s) 342, 1148, 1419
PspGI CCWGG 3 cut(s) 342, 1148, 1419
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 2 cut(s) 216, 878
PsuI RGATCY 1 cut(s) 260
PvuII CAGCTG 1 cut(s) 1330
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 1389
SacI GAGCTC 1 cut(s) 904
SaqAI TTAA 3 cut(s) 702, 1140, 1178
SatI GCNGC 6 cut(s) 119, 223, 236, 634, 1315, 1328
Sau3AI GATC 8 cut(s) 184, 260, 295, 559, 565, 952, 1254, 1342
Sau96I GGNCC 2 cut(s) 216, 878
ScrFI CCNGG 5 cut(s) 344, 371, 882, 1150, 1421
SduI GDGCHC 3 cut(s) 207, 904, 921
SfaNI GCATC 1 cut(s) 1201
SfuI TTCGAA 1 cut(s) 1304
SmiMI CAYNNNNRTG 1 cut(s) 1389
SmlI CTYRAG 3 cut(s) 239, 591, 1196
SmoI CTYRAG 3 cut(s) 239, 591, 1196
Sse9I AATT 7 cut(s) 96, 191, 624, 774, 968, 1048, 1088
SseBI AGGCCT 1 cut(s) 699
SsiI CCGC 5 cut(s) 118, 634, 640, 1190, 1252
SspI AATATT 1 cut(s) 282
SspMI CTAG 5 cut(s) 198, 914, 956, 1155, 1453
SstI GAGCTC 1 cut(s) 904
StuI AGGCCT 1 cut(s) 699
StyD4I CCNGG 5 cut(s) 342, 369, 880, 1148, 1419
TaaI ACNGT 7 cut(s) 114, 144, 247, 710, 811, 1162, 1358
TaiI ACGT 4 cut(s) 864, 979, 1026, 1378
TaqI TCGA 2 cut(s) 1020, 1304
TaqII GACCGA 1 cut(s) 1228
TasI AATT 7 cut(s) 96, 191, 624, 774, 968, 1048, 1088
TauI GCSGC 2 cut(s) 121, 636
TfiI GAWTC 5 cut(s) 580, 665, 933, 1145, 1168
Tru1I TTAA 3 cut(s) 702, 1140, 1178
Tru9I TTAA 3 cut(s) 702, 1140, 1178
TscAI CASTG 1 cut(s) 715
TseFI GTSAC 5 cut(s) 722, 740, 758, 984, 1434
TseI GCWGC 4 cut(s) 222, 235, 1314, 1327
Tsp45I GTSAC 5 cut(s) 722, 740, 758, 984, 1434
TspDTI ATGAA 8 cut(s) 105, 690, 822, 1101, 1139, 1158, 1262, 1373
TspGWI ACGGA 2 cut(s) 912, 1193
TspRI CASTG 1 cut(s) 715
XapI RAATTY 3 cut(s) 191, 968, 1048
XspI CTAG 5 cut(s) 198, 914, 956, 1155, 1453
ZraI GACGTC 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.