Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

21342799 .. 21343974

Gene Structure 1176 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18233

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGGAACATCATCTTCATCTCTTTATCATGCTATGGCGTTCTTTCCCGTTGCTGGGATTCCATCACTAGACGAGCGACATATGTGGGGCTTGAAGGAGCTTTGAGTAACCCCTCTCCCTCATGGGATGGTCGTTTTGACGATGACCTAATTGCTGAGATACTGTCGCGGCTTCCAGTCAAATCTTTAGTACGGTTTCGTTGTGTATGCAAGTCGTGGCTTGCTTTGATCTCTGATCCCAATTTTGCTAGGAAGCACATCAGCACATACACCAGCAGGTTGAATCTTCTTGAGACAGTCAATCCCACCAGATCCATAGACTTCGAAGCAATATTAAAGGATGACGATCGAGTGGGATATACCGTCCTACCAGAAGCACCAAGATTATGGGTTTTGGGTTCCTACAATGGCTTGATATGTCGGGAAGAAGACGAGGGAGGTGATCTTATCTTATGGAACCCTTCTACTCGAGATACATACAAGTTACCGGAACAAATTAAAACTAGATATCGTCAGTTTTTTGGATTTGGTTATGATTCCACCAATGAAGATTACAAGGTCATAGTAGGCCTTGAAACCGAAATTACAATCTTTACATTAAAAACCGGCTCATGGAAGATTGTTGAACAGTCCGAGTACGTTGGAAGGTTTTTTGGGGAGGGGTGCTTATTGAACGAAGCTCTACATTGGCTAGAGGACTGTCGGTCAAAATTCCCAATAATCTCTTTTGATCTGGCGGAGGAGAAATTTCAGGAGTTGCCACCACCCAATATTTGCAGGAAAGAAGTTTCTGGCCGCCTTGGTATTGGGAAAACTATTGGCAACTGTCTCTTCCTATATCTTTATGGTTCCAAGCGTCATACGTGCCAAACAGGTATTGCATTTATAATATGGGTGCTGAACGAATATGAGGTGAATGAATCTTGGACTAGAGTTGTTCAAATTCCTTCTTCTAGTTTATCTCCATGTCATATTTTTGATTATGAACCGATTTTGGTTTTAGAGGATGATAAAGTTTTGATAAATCGGATCAGCAATAGAAGCGAGTGGAACCAATTGGTATTGTATAATCCCAAGGAAAACCGTCAAAAAAAATATAGACGTCTTATTCATGATTATTACATAATGCCCAAATTATACGTGGAGACTTTAGTATCGCCAAAAACAGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

391

Amino Acids

45.26

Weight (kDa)

6.29

Isoelectric Point (pI)

44.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	47 - 84	9e-11	F-box domain
F-box-like	PF12937	48 - 82	3.2e-07	F-box-like
FBA_3	PF08268	129 - 365	1.9e-17	F-box associated beta propeller domain
FBA_1	PF07734	133 - 360	7.5e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AatII	GACGTC	1 cut(s)	1105
Acc36I	ACCTGC	1 cut(s)	267
AccII	CGCG	1 cut(s)	169
AciI	CCGC	3 cut(s)	169, 737, 796
AclWI	GGATC	3 cut(s)	230, 306, 1037
AcoI	YGGCCR	1 cut(s)	793
AcsI	RAATTY	3 cut(s)	710, 746, 942
AcyI	GRCGYC	1 cut(s)	1102
AfaI	GTAC	2 cut(s)	192, 638
AfiI	CCNNNNNNNGG	4 cut(s)	54, 55, 612, 1166
AgsI	TTSAA	6 cut(s)	95, 283, 575, 626, 673, 941
AhdI	GACNNNNNGTC	1 cut(s)	703
AluBI	AGCT	2 cut(s)	101, 680
AluI	AGCT	2 cut(s)	101, 680
Alw26I	GTCTC	3 cut(s)	287, 833, 1139
AlwI	GGATC	3 cut(s)	230, 306, 1037
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	2 cut(s)	568, 793
ApoI	RAATTY	3 cut(s)	710, 746, 942
AsuHPI	GGTGA	2 cut(s)	452, 925
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	1137, 1170
BbsI	GAAGAC	1 cut(s)	435
BccI	CCATC	2 cut(s)	71, 122
BcoDI	GTCTC	3 cut(s)	287, 833, 1139
BfaI	CTAG	6 cut(s)	69, 249, 504, 692, 930, 954
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	2 cut(s)	170, 796
BlsI	GCNGC	2 cut(s)	171, 797
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	468
BmiI	GGNNCC	4 cut(s)	400, 458, 850, 1052
BpiI	GAAGAC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	311
BsaAI	YACGTR	2 cut(s)	864, 1141
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	1 cut(s)	1102
BsaJI	CCNNGG	2 cut(s)	799, 1074
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	4 cut(s)	54, 55, 612, 1166
Bse118I	RCCGGY	1 cut(s)	605
Bse1I	ACTGG	1 cut(s)	176
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	799, 1074
BseGI	GGATG	3 cut(s)	133, 346, 1012
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	4 cut(s)	54, 55, 612, 1166
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	755
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	2 cut(s)	570, 795
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	2 cut(s)	488, 606
BslI	CCNNNNNNNGG	4 cut(s)	54, 55, 612, 1166
BsmAI	GTCTC	3 cut(s)	287, 833, 1139
BsnI	GGCC	2 cut(s)	570, 795
BsoBI	CYCGRG	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	324
Bsp143I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
BspACI	CCGC	3 cut(s)	169, 737, 796
BspANI	GGCC	2 cut(s)	570, 795
BspCNI	CTCAG	1 cut(s)	148
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	1111
BspLI	GGNNCC	4 cut(s)	400, 458, 850, 1052
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	3 cut(s)	230, 306, 1037
BspT104I	TTCGAA	1 cut(s)	324
BsrFI	RCCGGY	1 cut(s)	605
BsrI	ACTGG	1 cut(s)	176
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	799, 1074
BssMI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
BssNI	GRCGYC	1 cut(s)	1102
BssT1I	CCWWGG	2 cut(s)	799, 1074
Bst4CI	ACNGT	8 cut(s)	165, 195, 298, 364, 630, 701, 827, 1085
Bst6I	CTCTTC	1 cut(s)	836
BstACI	GRCGYC	1 cut(s)	1102
BstBAI	YACGTR	2 cut(s)	864, 1141
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	133, 346, 1012
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	7 cut(s)	231, 238, 314, 349, 445, 733, 1032
BstMAI	GTCTC	3 cut(s)	287, 833, 1139
BstMBI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	1041
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	570, 795
BtsCI	GGATG	3 cut(s)	133, 346, 1012
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	1111
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	1 cut(s)	845
Csp6I	GTAC	2 cut(s)	191, 637
CviAII	CATG	5 cut(s)	30, 123, 612, 966, 1112
CviQI	GTAC	2 cut(s)	191, 637
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1031
DpnII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
DriI	GACNNNNNGTC	1 cut(s)	703
EaeI	YGGCCR	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	836
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	836
EciI	GGCGGA	1 cut(s)	752
Eco130I	CCWWGG	2 cut(s)	799, 1074
Eco147I	AGGCCT	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	509
Eco88I	CYCGRG	1 cut(s)	468
EcoRV	GATATC	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	799, 1074
ErhI	CCWWGG	2 cut(s)	799, 1074
FaeI	CATG	5 cut(s)	33, 126, 615, 969, 1115
FatI	CATG	5 cut(s)	29, 122, 611, 965, 1111
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	2 cut(s)	170, 796
FokI	GGATG	3 cut(s)	140, 353, 1019
Fsp4HI	GCNGC	2 cut(s)	170, 796
FspBI	CTAG	6 cut(s)	69, 249, 504, 692, 930, 954
GluI	GCNGC	2 cut(s)	170, 796
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	2 cut(s)	570, 795
HapII	CCGG	2 cut(s)	488, 606
HgaI	GACGC	1 cut(s)	845
Hin1I	GRCGYC	1 cut(s)	1102
Hin1II	CATG	5 cut(s)	33, 126, 615, 969, 1115
HinfI	GANTC	4 cut(s)	59, 283, 536, 920
HpaII	CCGG	2 cut(s)	488, 606
HphI	GGTGA	2 cut(s)	452, 925
Hpy188I	TCNGA	3 cut(s)	235, 634, 1029
Hpy188III	TCNNGA	5 cut(s)	290, 422, 470, 752, 1112
HpyAV	CCTTC	4 cut(s)	89, 471, 639, 957
HpyCH4III	ACNGT	8 cut(s)	165, 195, 298, 364, 630, 701, 827, 1085
HpyCH4IV	ACGT	4 cut(s)	639, 863, 1102, 1140
HpyCH4V	TGCA	3 cut(s)	210, 777, 881
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1041
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	4 cut(s)	639, 863, 1102, 1140
Hsp92I	GRCGYC	1 cut(s)	1102
Hsp92II	CATG	5 cut(s)	33, 126, 615, 969, 1115
Kzo9I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
LmnI	GCTCC	1 cut(s)	98
MaeI	CTAG	6 cut(s)	69, 249, 504, 692, 930, 954
MaeII	ACGT	4 cut(s)	639, 863, 1102, 1140
MaeIII	GTNAC	2 cut(s)	107, 483
MalI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1031
MboI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
MboII	GAAGA	8 cut(s)	7, 278, 437, 440, 560, 628, 823, 942
MfeI	CAATTG	1 cut(s)	1055
MflI	RGATCY	1 cut(s)	311
MluCI	AATT	9 cut(s)	150, 241, 495, 582, 710, 746, 942, 1055, 1133
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	9 cut(s)	124, 130, 427, 431, 652, 688, 733, 904, 997
MseI	TTAA	3 cut(s)	335, 498, 599
MspI	CCGG	2 cut(s)	488, 606
MunI	CAATTG	1 cut(s)	1055
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	1 cut(s)	1041
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
NlaIII	CATG	5 cut(s)	33, 126, 615, 969, 1115
NlaIV	GGNNCC	4 cut(s)	400, 458, 850, 1052
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	468
PagI	TCATGA	1 cut(s)	1111
PceI	AGGCCT	1 cut(s)	570
PfeI	GAWTC	4 cut(s)	59, 283, 536, 920
PkrI	GCNGC	2 cut(s)	171, 797
Ple19I	CGATCG	1 cut(s)	349
Ppu21I	YACGTR	2 cut(s)	864, 1141
PsiI	TTATAA	1 cut(s)	887
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	4 cut(s)	400, 458, 850, 1052
PsuI	RGATCY	1 cut(s)	311
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	2 cut(s)	192, 638
RsaNI	GTAC	2 cut(s)	191, 637
SaqAI	TTAA	3 cut(s)	335, 498, 599
SatI	GCNGC	2 cut(s)	170, 796
Sau3AI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1029
Sfr274I	CTCGAG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	290, 468
SmoI	CTYRAG	2 cut(s)	290, 468
Sse9I	AATT	9 cut(s)	150, 241, 495, 582, 710, 746, 942, 1055, 1133
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	3 cut(s)	169, 737, 796
SspI	AATATT	2 cut(s)	333, 772
SspMI	CTAG	6 cut(s)	69, 249, 504, 692, 930, 954
StuI	AGGCCT	1 cut(s)	570
StyI	CCWWGG	2 cut(s)	799, 1074
TaaI	ACNGT	8 cut(s)	165, 195, 298, 364, 630, 701, 827, 1085
TaiI	ACGT	4 cut(s)	642, 866, 1105, 1143
TaqI	TCGA	3 cut(s)	324, 349, 469
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	9 cut(s)	150, 241, 495, 582, 710, 746, 942, 1055, 1133
TauI	GCSGC	2 cut(s)	172, 798
TfiI	GAWTC	4 cut(s)	59, 283, 536, 920
Tru1I	TTAA	3 cut(s)	335, 498, 599
Tru9I	TTAA	3 cut(s)	335, 498, 599
TspDTI	ATGAA	5 cut(s)	7, 561, 933, 999, 1100
XapI	RAATTY	3 cut(s)	710, 746, 942
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1138
XhoI	CTCGAG	1 cut(s)	468
XspI	CTAG	6 cut(s)	69, 249, 504, 692, 930, 954
ZraI	GACGTC	1 cut(s)	1103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.