Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

11560246 .. 11561765

Gene Structure 1520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1131100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGCAGAAGGTGGCCTGCCGGAGCGACAGACGCAACTGGTCCCATCGGATCATGGTGCCTGTATCTTCACAAATGATATCATCATCGAGATACCGTCATGGGTTCCAGGGAAATCCTTACTACGATTTCGGCGTGTATGCAAGTCATGGCGTACCTTAATCTCAGATCCTTATTTTGTCAGAAAGCAGCTCAGCCATACAGTTAGACGCATCATCAACAACAACAACGACAACTTGAGGCTACTAACGTTTACAAGTACAAGGCATCTCAGGTCCATAGACTATGAATCTTTATTGACATTATTAGCGAAGAACAAGCACGAAAATGTTAGTCGTGTAGTTGTTCCACGCTGCAGAAAGCACAAATTACTACTGGTAGAGCCTCAAAGAAGATTCGTGCAGATTATGGGTTCTAGCAATGGCTTGATGTCAACAGATAAACTGCTTGGACGTTGTCTTGTGGAACCCTTGTACTGGAAATGCCAACAAATGGGTTCATGGAGGACTGTTGAAGGCCTCAATCATGTTGAATTGATTGGACGGGGTTTGTTGTTGAACGGGGCCCTACATTGGCTAGACAGGAAACGCGGTGAAGGTAGCCAAATAGATTCAAAATTAAGAATCATATCTTTCGATTTGGCTCAGGAAAACTTTCAGGAGCTAGTGCGCTTACCCATTGTCATTGAAGAACAATCGATGATTTGGGCGGATGTGTTGGAAGTTCAAATCAAATACAGTGGCCGAAATTGGTGGAACACTTTTCAGAAATTGGTGGAACACTTTTCAGCTAGCATAAACAGGAGTATGATAATATGGGTGATGGCAGAATACGGATTCGAGGAATATTGGACCAAACTGATAGTGCTGAACGATATACCCTATATAAATCCACGGCTTTTATATGTGTTCAGAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

306

Amino Acids

35.72

Weight (kDa)

9.57

Isoelectric Point (pI)

39.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	25 - 61	1.1e-08	F-box domain
F-box-like	PF12937	25 - 62	8.5e-07	F-box-like
FBA_1	PF07734	166 - 288	6e-08	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	56
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccII	CGCG	1 cut(s)	588
AciI	CCGC	2 cut(s)	588, 707
AclI	AACGTT	1 cut(s)	248
AclWI	GGATC	2 cut(s)	57, 161
AcoI	YGGCCR	1 cut(s)	739
AfaI	GTAC	3 cut(s)	154, 259, 473
AfiI	CCNNNNNNNGG	3 cut(s)	474, 490, 570
AgsI	TTSAA	6 cut(s)	512, 530, 556, 612, 686, 725
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	3 cut(s)	190, 661, 788
AluI	AGCT	3 cut(s)	190, 661, 788
AlwI	GGATC	2 cut(s)	57, 161
AoxI	GGCC	4 cut(s)	13, 514, 561, 739
ApaI	GGGCCC	1 cut(s)	565
ApeKI	GCWGC	2 cut(s)	187, 351
Asp700I	GAANNNNTTC	1 cut(s)	651
AspLEI	GCGC	1 cut(s)	669
AspS9I	GGNCC	5 cut(s)	40, 273, 561, 562, 849
AsuHPI	GGTGA	2 cut(s)	602, 829
AsuNHI	GCTAGC	1 cut(s)	788
AvaII	GGWCC	3 cut(s)	40, 273, 849
BaeGI	GKGCMC	1 cut(s)	565
BanI	GGYRCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	565
BbvI	GCAGC	2 cut(s)	199, 338
BccI	CCATC	2 cut(s)	52, 814
BceAI	ACGGC	1 cut(s)	908
BciT130I	CCWGG	1 cut(s)	108
BfaI	CTAG	4 cut(s)	414, 575, 662, 789
BfmI	CTRYAG	1 cut(s)	352
BisI	GCNGC	2 cut(s)	188, 352
BlpI	GCTNAGC	1 cut(s)	191
BlsI	GCNGC	2 cut(s)	189, 353
Bme1390I	CCNGG	1 cut(s)	108
Bme18I	GGWCC	3 cut(s)	40, 273, 849
BmgT120I	GGNCC	5 cut(s)	40, 273, 561, 562, 849
BmiI	GGNNCC	6 cut(s)	42, 58, 105, 465, 562, 563
BmrFI	CCNGG	1 cut(s)	108
BmsI	GCATC	2 cut(s)	219, 274
BmtI	GCTAGC	1 cut(s)	792
Bpu10I	CCTNAGC	1 cut(s)	642
Bpu1102I	GCTNAGC	1 cut(s)	191
BpuEI	CTTGAG	1 cut(s)	256
Bsa29I	ATCGAT	1 cut(s)	695
BsaJI	CCNNGG	2 cut(s)	107, 890
Bsc4I	CCNNNNNNNGG	3 cut(s)	474, 490, 570
Bse1I	ACTGG	3 cut(s)	42, 378, 479
Bse3DI	GCAATG	1 cut(s)	424
BseBI	CCWGG	1 cut(s)	108
BseCI	ATCGAT	1 cut(s)	695
BseDI	CCNNGG	2 cut(s)	107, 890
BseGI	GGATG	1 cut(s)	715
BseLI	CCNNNNNNNGG	3 cut(s)	474, 490, 570
BseMI	GCAATG	1 cut(s)	424
BseMII	CTCAG	4 cut(s)	177, 205, 283, 656
BseNI	ACTGG	3 cut(s)	42, 378, 479
BseSI	GKGCMC	1 cut(s)	565
BseXI	GCAGC	2 cut(s)	199, 338
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	1 cut(s)	588
BshFI	GGCC	4 cut(s)	15, 516, 563, 741
BshNI	GGYRCC	1 cut(s)	56
BshVI	ATCGAT	1 cut(s)	695
BsiSI	CCGG	1 cut(s)	20
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	474, 490, 570
BsmFI	GGGAC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	15, 516, 563, 741
Bsp120I	GGGCCC	1 cut(s)	561
Bsp1286I	GDGCHC	1 cut(s)	565
Bsp143I	GATC	2 cut(s)	49, 166
Bsp1720I	GCTNAGC	1 cut(s)	191
BspACI	CCGC	2 cut(s)	588, 707
BspANI	GGCC	4 cut(s)	15, 516, 563, 741
BspCNI	CTCAG	4 cut(s)	176, 204, 282, 655
BspDI	ATCGAT	1 cut(s)	695
BspFNI	CGCG	1 cut(s)	588
BspLI	GGNNCC	6 cut(s)	42, 58, 105, 465, 562, 563
BspMAI	CTGCAG	1 cut(s)	356
BspOI	GCTAGC	1 cut(s)	792
BspPI	GGATC	2 cut(s)	57, 161
BspT107I	GGYRCC	1 cut(s)	56
BsrDI	GCAATG	1 cut(s)	424
BsrI	ACTGG	3 cut(s)	42, 378, 479
BssECI	CCNNGG	2 cut(s)	107, 890
BssMI	GATC	2 cut(s)	49, 166
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	4 cut(s)	96, 202, 508, 737
BstC8I	GCNNGC	2 cut(s)	17, 790
BstDEI	CTNAG	4 cut(s)	163, 191, 269, 642
BstDSI	CCRYGG	1 cut(s)	890
BstF5I	GGATG	1 cut(s)	715
BstFNI	CGCG	1 cut(s)	588
BstHHI	GCGC	1 cut(s)	669
BstKTI	GATC	2 cut(s)	52, 169
BstMBI	GATC	2 cut(s)	49, 166
BstMWI	GCNNNNNNNGC	1 cut(s)	31
BstNI	CCWGG	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	106
BstSFI	CTRYAG	1 cut(s)	352
BstSLI	GKGCMC	1 cut(s)	565
BstUI	CGCG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	199, 338
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	695
BsuRI	GGCC	4 cut(s)	15, 516, 563, 741
BsuTUI	ATCGAT	1 cut(s)	695
BtgI	CCRYGG	1 cut(s)	890
BtsCI	GGATG	1 cut(s)	715
BtsIMutI	CAGTG	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	17, 790
CfoI	GCGC	1 cut(s)	669
Cfr13I	GGNCC	5 cut(s)	40, 273, 561, 562, 849
ClaI	ATCGAT	1 cut(s)	695
CseI	GACGC	2 cut(s)	40, 216
Csp6I	GTAC	3 cut(s)	153, 258, 472
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviAII	CATG	5 cut(s)	53, 99, 147, 498, 524
CviQI	GTAC	3 cut(s)	153, 258, 472
DdeI	CTNAG	4 cut(s)	163, 191, 269, 642
DpnI	GATC	2 cut(s)	51, 168
DpnII	GATC	2 cut(s)	49, 166
EaeI	YGGCCR	1 cut(s)	739
EciI	GGCGGA	1 cut(s)	722
Eco147I	AGGCCT	1 cut(s)	516
Eco24I	GRGCYC	1 cut(s)	565
Eco32I	GATATC	1 cut(s)	79
Eco47I	GGWCC	3 cut(s)	40, 273, 849
EcoO109I	RGGNCCY	2 cut(s)	561, 562
EcoRII	CCWGG	1 cut(s)	106
EcoRV	GATATC	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	565
FaeI	CATG	5 cut(s)	56, 102, 150, 501, 527
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	5 cut(s)	52, 98, 146, 497, 523
Fnu4HI	GCNGC	2 cut(s)	188, 352
FokI	GGATG	1 cut(s)	722
FriOI	GRGCYC	1 cut(s)	565
Fsp4HI	GCNGC	2 cut(s)	188, 352
FspBI	CTAG	4 cut(s)	414, 575, 662, 789
GlaI	GCGC	1 cut(s)	668
GluI	GCNGC	2 cut(s)	188, 352
HaeIII	GGCC	4 cut(s)	15, 516, 563, 741
HapII	CCGG	1 cut(s)	20
HgaI	GACGC	2 cut(s)	40, 216
HhaI	GCGC	1 cut(s)	669
Hin1II	CATG	5 cut(s)	56, 102, 150, 501, 527
Hin6I	GCGC	1 cut(s)	667
HinP1I	GCGC	1 cut(s)	667
HincII	GTYRAC	1 cut(s)	432
HindII	GTYRAC	1 cut(s)	432
HinfI	GANTC	5 cut(s)	287, 393, 608, 621, 834
HpaII	CCGG	1 cut(s)	20
HphI	GGTGA	2 cut(s)	602, 829
Hpy166II	GTNNAC	2 cut(s)	252, 432
Hpy188I	TCNGA	5 cut(s)	49, 166, 182, 765, 911
Hpy188III	TCNNGA	3 cut(s)	88, 644, 656
Hpy8I	GTNNAC	2 cut(s)	252, 432
HpyAV	CCTTC	2 cut(s)	506, 587
HpyCH4III	ACNGT	4 cut(s)	96, 202, 508, 737
HpyCH4IV	ACGT	2 cut(s)	248, 451
HpyCH4V	TGCA	3 cut(s)	141, 354, 400
HpyF10VI	GCNNNNNNNGC	1 cut(s)	31
HpyF3I	CTNAG	4 cut(s)	163, 191, 269, 642
HpySE526I	ACGT	2 cut(s)	248, 451
Hsp92II	CATG	5 cut(s)	56, 102, 150, 501, 527
HspAI	GCGC	1 cut(s)	667
Kzo9I	GATC	2 cut(s)	49, 166
LmnI	GCTCC	2 cut(s)	22, 658
Lsp1109I	GCAGC	2 cut(s)	199, 338
LweI	GCATC	2 cut(s)	219, 274
MaeI	CTAG	4 cut(s)	414, 575, 662, 789
MaeII	ACGT	2 cut(s)	248, 451
MalI	GATC	2 cut(s)	51, 168
MboI	GATC	2 cut(s)	49, 166
MboII	GAAGA	4 cut(s)	58, 322, 402, 698
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	1 cut(s)	565
MluCI	AATT	5 cut(s)	365, 530, 614, 745, 767
MmeI	TCCRAC	1 cut(s)	696
MnlI	CCTC	6 cut(s)	231, 393, 495, 527, 832, 905
MroXI	GAANNNNTTC	1 cut(s)	651
MseI	TTAA	2 cut(s)	158, 617
MslI	CAYNNNNRTG	1 cut(s)	324
MspI	CCGG	1 cut(s)	20
MspR9I	CCNGG	1 cut(s)	108
MvaI	CCWGG	1 cut(s)	108
MvnI	CGCG	1 cut(s)	588
MwoI	GCNNNNNNNGC	1 cut(s)	31
NdeII	GATC	2 cut(s)	49, 166
NheI	GCTAGC	1 cut(s)	788
NlaIII	CATG	5 cut(s)	56, 102, 150, 501, 527
NlaIV	GGNNCC	6 cut(s)	42, 58, 105, 465, 562, 563
PceI	AGGCCT	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	130
PdmI	GAANNNNTTC	1 cut(s)	651
PfeI	GAWTC	5 cut(s)	287, 393, 608, 621, 834
PflFI	GACNNNGTC	1 cut(s)	453
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	2 cut(s)	189, 353
Psp1406I	AACGTT	1 cut(s)	248
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	6 cut(s)	42, 58, 105, 465, 562, 563
PspOMI	GGGCCC	1 cut(s)	561
PspPI	GGNCC	5 cut(s)	40, 273, 561, 562, 849
PstI	CTGCAG	1 cut(s)	356
PsuI	RGATCY	1 cut(s)	166
PsyI	GACNNNGTC	1 cut(s)	453
RsaI	GTAC	3 cut(s)	154, 259, 473
RsaNI	GTAC	3 cut(s)	153, 258, 472
RseI	CAYNNNNRTG	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	158, 617
SatI	GCNGC	2 cut(s)	188, 352
Sau3AI	GATC	2 cut(s)	49, 166
Sau96I	GGNCC	5 cut(s)	40, 273, 561, 562, 849
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	565
SetI	ASST	9 cut(s)	13, 158, 192, 251, 275, 454, 598, 663, 790
SfaNI	GCATC	2 cut(s)	219, 274
SfcI	CTRYAG	1 cut(s)	352
SinI	GGWCC	3 cut(s)	40, 273, 849
SmiMI	CAYNNNNRTG	1 cut(s)	324
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	5 cut(s)	365, 530, 614, 745, 767
SseBI	AGGCCT	1 cut(s)	516
SsiI	CCGC	2 cut(s)	588, 707
SspI	AATATT	1 cut(s)	845
SspMI	CTAG	4 cut(s)	414, 575, 662, 789
StuI	AGGCCT	1 cut(s)	516
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	4 cut(s)	96, 202, 508, 737
TaiI	ACGT	2 cut(s)	251, 454
TaqI	TCGA	4 cut(s)	87, 633, 695, 837
TasI	AATT	5 cut(s)	365, 530, 614, 745, 767
TatI	WGTACW	2 cut(s)	257, 471
TfiI	GAWTC	5 cut(s)	287, 393, 608, 621, 834
Tru1I	TTAA	2 cut(s)	158, 617
Tru9I	TTAA	2 cut(s)	158, 617
TscAI	CASTG	1 cut(s)	742
TseI	GCWGC	2 cut(s)	187, 351
TspDTI	ATGAA	2 cut(s)	300, 486
TspGWI	ACGGA	1 cut(s)	846
TspRI	CASTG	1 cut(s)	742
Tth111I	GACNNNGTC	1 cut(s)	453
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	3 cut(s)	40, 273, 849
XmnI	GAANNNNTTC	1 cut(s)	651
XspI	CTAG	4 cut(s)	414, 575, 662, 789

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.