Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

70170819 .. 70173478

Gene Structure 2660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGGGAAACATCATCTTCATCTCTTTATCATGCTATGGCGTTCTTTCCCGCTGCTGGGATTCCATCACTAGACGAGCGACATATGTAGGGCTTGAAGGAGCTTTGAGCAACCCCTCTCCCTCATGGGATGGTCGTTTTGACGATGACCTAATTGTTGAGATACTGTCACGGCTTCCAGCCAAATCTTTACTACGGTTTCGTTGTGTATGCAAGTCATGGCTTGCTTTGATCTCTGATCCCAATTTTGCTAGGAAGCACATCAGCACATACGCCAGCAGGTTGAAGCTTCTTGAGACCGTCAATCCCACCAGATCCATAGACTTCGAAGCAATATTAAAGGATGACGATCGGGTGGGATATACCGTCCTACCAGAAGCACCAAGATTATGGGTTCTGGGTTCTTGCAATGGCTTGATATGCCGGGAAGAAGACGAGGGAGGTGATCTTATCTTATGGAACCCTTCTACTCGAGATACATACAAGTTACCGGAACAAATTAAAACTAGATATCGTCAGTTTTTTGGATTTGGTTATGATTCCACCAATGAAGATTACAAGGTCATAGTAGGCCTTGAAACCGAAATTAAAGTCTTTACATTAAAAACCGGCTCATGGAAGATTGTTGAACAGTCCGAGTACGTTGGAAGGTTTTATGGGGAGGGGTGCTTATTGAACGGAGCTCTACATTGGCTAGAGAACTGTTGGTCAAAATTCACAATAATCTCTTTTGATCTGGCGGAGGAGAAATTTCAGGAGTTGCCACCACCCAATATTTGCAGGGAAGAAGTTTCTGGCCGCCTTGGTATTGGGAAAACTATTGGCAACTGTCTCTTCCTCTATCTTTATGATTCCAAGCGTCATACGTCCCAAACAGTGGTGGCCGGTGGTTGTGCTGCAGTGGAGGAAGTCTTACAAGCTCCTCTAATTGGGGCTGGGGTCTCCATTTTGGTATTTGGAGTCTTGGATTTCAAGGGTGCCGAGGAGGTCGTCGGCTGCGACAAGGAGATTTTCAAGGACTACTTGAACATGTCGGGTTTAAGCGGTGGAAGAAGATTTACGGCGAGAAGAAGGTTTGGTAGCGTCACCGTCCGTGACGCCGGCTGTCTCGCTATCCCACTCGCTAAGGAAGGCGTCGTCGTCACCGCCACTGACATTTTCGCCGTAATGATGGAGAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

393

Amino Acids

43.96

Weight (kDa)

5.68

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	47 - 84	8.3e-11	F-box domain
F-box-like	PF12937	48 - 82	5e-08	F-box-like
FBA_3	PF08268	129 - 256	6.2e-19	F-box associated beta propeller domain
FBA_1	PF07734	132 - 259	5.8e-18	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	974
AccB7I	CCANNNNNTGG	1 cut(s)	874
AciI	CCGC	5 cut(s)	49, 737, 796, 1041, 1143
AclWI	GGATC	2 cut(s)	230, 306
AcoI	YGGCCR	2 cut(s)	793, 879
AcsI	RAATTY	3 cut(s)	710, 746, 1175
AcyI	GRCGYC	2 cut(s)	1095, 1131
AfaI	GTAC	1 cut(s)	638
AfiI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 874, 926
AflIII	ACRYGT	1 cut(s)	1026
AgsI	TTSAA	8 cut(s)	95, 283, 575, 626, 673, 970, 1012, 1024
AluBI	AGCT	4 cut(s)	101, 286, 680, 917
AluI	AGCT	4 cut(s)	101, 286, 680, 917
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	287, 833, 943, 1109
AlwI	GGATC	2 cut(s)	230, 306
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	3 cut(s)	568, 793, 879
ApeKI	GCWGC	3 cut(s)	51, 893, 993
ApoI	RAATTY	3 cut(s)	710, 746, 1175
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	452, 1075, 1132
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	468
BanI	GGYRCC	1 cut(s)	974
BanII	GRGCYC	1 cut(s)	682
BarI	GAAGNNNNNNTAC	2 cut(s)	1039, 1071
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	3 cut(s)	38, 880, 980
BccI	CCATC	3 cut(s)	71, 122, 1162
BceAI	ACGGC	3 cut(s)	185, 1074, 1145
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	287, 833, 943, 1109
BfaI	CTAG	4 cut(s)	69, 249, 504, 692
BfmI	CTRYAG	1 cut(s)	894
BfuAI	ACCTGC	1 cut(s)	267
BisI	GCNGC	4 cut(s)	52, 796, 894, 994
BlsI	GCNGC	4 cut(s)	53, 797, 895, 995
Bme1390I	CCNGG	1 cut(s)	422
BmeT110I	CYCGRG	1 cut(s)	468
BmiI	GGNNCC	2 cut(s)	458, 976
BmrFI	CCNGG	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	435
Bpu10I	CCTNAGC	1 cut(s)	1122
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	422
BsaBI	GATNNNNATC	1 cut(s)	345
BsaHI	GRCGYC	2 cut(s)	1095, 1131
BsaI	GGTCTC	2 cut(s)	287, 943
BsaJI	CCNNGG	2 cut(s)	799, 978
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 874, 926
Bse118I	RCCGGY	3 cut(s)	605, 881, 1097
Bse3DI	GCAATG	1 cut(s)	412
Bse8I	GATNNNNATC	1 cut(s)	345
BseDI	CCNNGG	2 cut(s)	799, 978
BseGI	GGATG	2 cut(s)	133, 346
BseJI	GATNNNNATC	1 cut(s)	345
BseLI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 874, 926
BseMI	GCAATG	1 cut(s)	412
BseRI	GAGGAG	3 cut(s)	755, 909, 995
BseXI	GCAGC	3 cut(s)	38, 880, 980
BseYI	CCCAGC	2 cut(s)	54, 932
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	3 cut(s)	570, 795, 881
BshNI	GGYRCC	1 cut(s)	974
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	5 cut(s)	421, 488, 606, 882, 1098
BslFI	GGGAC	1 cut(s)	850
BslI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 874, 926
BsmAI	GTCTC	4 cut(s)	287, 833, 943, 1109
BsmFI	GGGAC	1 cut(s)	850
BsnI	GGCC	3 cut(s)	570, 795, 881
Bso31I	GGTCTC	2 cut(s)	287, 943
BsoBI	CYCGRG	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
BspACI	CCGC	5 cut(s)	49, 737, 796, 1041, 1143
BspANI	GGCC	3 cut(s)	570, 795, 881
BspLI	GGNNCC	2 cut(s)	458, 976
BspMAI	CTGCAG	1 cut(s)	898
BspMI	ACCTGC	1 cut(s)	267
BspPI	GGATC	2 cut(s)	230, 306
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	974
BspTNI	GGTCTC	2 cut(s)	287, 943
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	3 cut(s)	605, 881, 1097
BssAI	RCCGGY	3 cut(s)	605, 881, 1097
BssECI	CCNNGG	2 cut(s)	799, 978
BssMI	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
BssNI	GRCGYC	2 cut(s)	1095, 1131
BssT1I	CCWWGG	1 cut(s)	799
Bst4CI	ACNGT	9 cut(s)	165, 195, 298, 364, 630, 701, 827, 874, 1087
Bst6I	CTCTTC	1 cut(s)	836
BstACI	GRCGYC	2 cut(s)	1095, 1131
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	3 cut(s)	222, 274, 1099
BstDEI	CTNAG	1 cut(s)	1122
BstF5I	GGATG	2 cut(s)	133, 346
BstKTI	GATC	6 cut(s)	231, 238, 314, 349, 445, 733
BstMAI	GTCTC	4 cut(s)	287, 833, 943, 1109
BstMBI	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	1 cut(s)	417
BstNSI	RCATGY	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	894
BstV1I	GCAGC	3 cut(s)	38, 880, 980
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	3 cut(s)	570, 795, 881
BtsCI	GGATG	2 cut(s)	133, 346
BtsI	GCAGTG	1 cut(s)	903
BtsIMutI	CAGTG	3 cut(s)	879, 903, 1146
BveI	ACCTGC	1 cut(s)	267
Cac8I	GCNNGC	3 cut(s)	222, 274, 1099
Cfr10I	RCCGGY	3 cut(s)	605, 881, 1097
CseI	GACGC	4 cut(s)	845, 1069, 1103, 1120
Csp6I	GTAC	1 cut(s)	637
CviAII	CATG	5 cut(s)	30, 123, 216, 612, 1027
CviQI	GTAC	1 cut(s)	637
DdeI	CTNAG	1 cut(s)	1122
DpnI	GATC	6 cut(s)	230, 237, 313, 348, 444, 732
DpnII	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
EaeI	YGGCCR	2 cut(s)	793, 879
Eam1104I	CTCTTC	1 cut(s)	836
EarI	CTCTTC	1 cut(s)	836
EciI	GGCGGA	1 cut(s)	752
Ecl136II	GAGCTC	1 cut(s)	680
Eco130I	CCWWGG	1 cut(s)	799
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	682
Eco31I	GGTCTC	2 cut(s)	287, 943
Eco32I	GATATC	1 cut(s)	509
Eco53kI	GAGCTC	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	680
EcoRV	GATATC	1 cut(s)	509
EcoT14I	CCWWGG	1 cut(s)	799
EcoT38I	GRGCYC	1 cut(s)	682
ErhI	CCWWGG	1 cut(s)	799
FaeI	CATG	5 cut(s)	33, 126, 219, 615, 1030
FalI	AAGNNNNNCTT	2 cut(s)	1004, 1036
FaqI	GGGAC	1 cut(s)	850
FatI	CATG	5 cut(s)	29, 122, 215, 611, 1026
FauI	CCCGC	1 cut(s)	56
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	4 cut(s)	52, 796, 894, 994
FokI	GGATG	2 cut(s)	140, 353
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	4 cut(s)	52, 796, 894, 994
FspBI	CTAG	4 cut(s)	69, 249, 504, 692
GluI	GCNGC	4 cut(s)	52, 796, 894, 994
GsaI	CCCAGC	2 cut(s)	58, 936
HaeIII	GGCC	3 cut(s)	570, 795, 881
HapII	CCGG	5 cut(s)	421, 488, 606, 882, 1098
HgaI	GACGC	4 cut(s)	845, 1069, 1103, 1120
Hin1I	GRCGYC	2 cut(s)	1095, 1131
Hin1II	CATG	5 cut(s)	33, 126, 219, 615, 1030
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	59, 536, 848, 957
HpaII	CCGG	5 cut(s)	421, 488, 606, 882, 1098
HphI	GGTGA	3 cut(s)	452, 1075, 1132
Hpy188I	TCNGA	2 cut(s)	235, 634
Hpy188III	TCNNGA	3 cut(s)	290, 470, 752
Hpy99I	CGWCG	3 cut(s)	992, 1136, 1139
HpyAV	CCTTC	5 cut(s)	89, 471, 639, 1062, 1121
HpyCH4III	ACNGT	9 cut(s)	165, 195, 298, 364, 630, 701, 827, 874, 1087
HpyCH4IV	ACGT	2 cut(s)	639, 863
HpyCH4V	TGCA	4 cut(s)	210, 405, 777, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	417
HpyF3I	CTNAG	1 cut(s)	1122
HpySE526I	ACGT	2 cut(s)	639, 863
Hsp92I	GRCGYC	2 cut(s)	1095, 1131
Hsp92II	CATG	5 cut(s)	33, 126, 219, 615, 1030
KroI	GCCGGC	1 cut(s)	1097
KroNI	GCCGGC	1 cut(s)	1099
Kzo9I	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
LmnI	GCTCC	3 cut(s)	98, 677, 922
Lsp1109I	GCAGC	3 cut(s)	38, 880, 980
MaeI	CTAG	4 cut(s)	69, 249, 504, 692
MaeII	ACGT	2 cut(s)	639, 863
MaeIII	GTNAC	5 cut(s)	165, 483, 1081, 1091, 1138
MalI	GATC	6 cut(s)	230, 237, 313, 348, 444, 732
MboI	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	8 cut(s)	150, 241, 495, 582, 710, 746, 924, 1175
MlyI	GAGTC	1 cut(s)	966
MmeI	TCCRAC	1 cut(s)	622
MroNI	GCCGGC	1 cut(s)	1097
MseI	TTAA	5 cut(s)	335, 498, 585, 599, 1037
MspA1I	CMGCKG	1 cut(s)	51
MspI	CCGG	5 cut(s)	421, 488, 606, 882, 1098
MspR9I	CCNGG	1 cut(s)	422
MwoI	GCNNNNNNNGC	1 cut(s)	417
NaeI	GCCGGC	1 cut(s)	1099
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
NgoMIV	GCCGGC	1 cut(s)	1097
NlaIII	CATG	5 cut(s)	33, 126, 219, 615, 1030
NlaIV	GGNNCC	2 cut(s)	458, 976
NmeAIII	GCCGAG	1 cut(s)	1003
NmuCI	GTSAC	4 cut(s)	165, 1081, 1091, 1138
NspI	RCATGY	1 cut(s)	1030
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	570
PciI	ACATGT	1 cut(s)	1026
PcsI	WCGNNNNNNNCGW	1 cut(s)	993
PdiI	GCCGGC	1 cut(s)	1099
PfeI	GAWTC	3 cut(s)	59, 536, 848
PflMI	CCANNNNNTGG	1 cut(s)	874
PkrI	GCNGC	4 cut(s)	53, 797, 895, 995
Ple19I	CGATCG	1 cut(s)	349
PleI	GAGTC	1 cut(s)	965
PpsI	GAGTC	1 cut(s)	965
PscI	ACATGT	1 cut(s)	1026
Psp124BI	GAGCTC	1 cut(s)	682
PspFI	CCCAGC	2 cut(s)	54, 932
PspN4I	GGNNCC	2 cut(s)	458, 976
PstI	CTGCAG	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	311
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	638
RsaNI	GTAC	1 cut(s)	637
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	5 cut(s)	335, 498, 585, 599, 1037
SatI	GCNGC	4 cut(s)	52, 796, 894, 994
Sau3AI	GATC	6 cut(s)	228, 235, 311, 346, 442, 730
SchI	GAGTC	1 cut(s)	966
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	894
Sfr274I	CTCGAG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	290, 468
SmoI	CTYRAG	2 cut(s)	290, 468
Sse9I	AATT	8 cut(s)	150, 241, 495, 582, 710, 746, 924, 1175
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	5 cut(s)	49, 737, 796, 1041, 1143
SspI	AATATT	2 cut(s)	333, 772
SspMI	CTAG	4 cut(s)	69, 249, 504, 692
SstI	GAGCTC	1 cut(s)	682
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	1 cut(s)	799
TaaI	ACNGT	9 cut(s)	165, 195, 298, 364, 630, 701, 827, 874, 1087
TaiI	ACGT	2 cut(s)	642, 866
TaqI	TCGA	2 cut(s)	324, 469
TasI	AATT	8 cut(s)	150, 241, 495, 582, 710, 746, 924, 1175
TauI	GCSGC	1 cut(s)	798
TfiI	GAWTC	3 cut(s)	59, 536, 848
Tru1I	TTAA	5 cut(s)	335, 498, 585, 599, 1037
Tru9I	TTAA	5 cut(s)	335, 498, 585, 599, 1037
TscAI	CASTG	3 cut(s)	879, 903, 1153
TseFI	GTSAC	4 cut(s)	165, 1081, 1091, 1138
TseI	GCWGC	3 cut(s)	51, 893, 993
Tsp45I	GTSAC	4 cut(s)	165, 1081, 1091, 1138
TspDTI	ATGAA	2 cut(s)	7, 561
TspGWI	ACGGA	2 cut(s)	690, 1079
TspRI	CASTG	3 cut(s)	879, 903, 1153
Van91I	CCANNNNNTGG	1 cut(s)	874
XapI	RAATTY	3 cut(s)	710, 746, 1175
XceI	RCATGY	1 cut(s)	1030
XhoI	CTCGAG	1 cut(s)	468
XspI	CTAG	4 cut(s)	69, 249, 504, 692

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.