Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_420

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

1255792 .. 1256473

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom420g00950.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGACTACGAAGCATTGAATGATAATGATGCTTATGTTCCGATAAGAAAGCTTACTTGTCCCTCTGTAACGACCTCAGAAATGTTTGTTAATCTTTTGGGTTCTTGCAATGGCTTGGTATGTCTAGCAGTTGAAGACAGCGACGATTACGCCGGCATTATCTTATGGAACCCCTCTACCGGAGATACCACTGTCTTACCAAAACCTCCGTTTAACAAACGATTTTACGAGTTGGGATCCGACGACAAGCTGTTTTATGGATTGGGATATGATTCCTACAATGAAGACTACAAGGTAATATTGGGCAGTCGAGATACAACCGAAACAAATCCCTTCCAAACTGCGATAAACGTCTTCACAGGAAGGGGTGTGCAGGCTTGCTTCTTAAATGGAGCTCTTCATTGGGTACAACTTGAGATGATGATTTCTACTATCATTTCTTTTGATTTAGCAGATGAAAAACTAGCTCAGACACTGCCATTGCCGGATTCCAACAACGGAGAAGTCTTTGTGGGAGTTGGTCCTACCGGAAATTGTCTCTTCACATTTACTATCCCGATCGATAGCACTTGGTTTTCAATATGGATTATGAAGGAATCTTGGACTCAAGTGGCGAAAATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like FBA_1

Protein Analysis

209

Amino Acids

23.12

Weight (kDa)

4.21

Isoelectric Point (pI)

29.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	231, 244
AcsI	RAATTY	1 cut(s)	618
AfaI	GTAC	1 cut(s)	408
AfiI	CCNNNNNNNGG	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	19, 134, 579
AluBI	AGCT	4 cut(s)	52, 250, 395, 467
AluI	AGCT	4 cut(s)	52, 250, 395, 467
Alw21I	GWGCWC	1 cut(s)	397
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	2 cut(s)	231, 244
AlwNI	CAGNNNCTG	1 cut(s)	475
ApoI	RAATTY	1 cut(s)	618
AspS9I	GGNCC	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	521
BaeI	ACNNNNGTAYC	2 cut(s)	177, 210
BamHI	GGATCC	1 cut(s)	236
BanII	GRGCYC	1 cut(s)	397
BbsI	GAAGAC	3 cut(s)	141, 291, 346
Bbv12I	GWGCWC	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	125, 464
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	521
BmiI	GGNNCC	2 cut(s)	170, 238
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	3 cut(s)	141, 291, 346
BpuEI	CTTGAG	2 cut(s)	434, 591
Bsa29I	ATCGAT	1 cut(s)	561
BsaWI	WCCGGW	2 cut(s)	179, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	179
Bse118I	RCCGGY	1 cut(s)	152
Bse3DI	GCAATG	2 cut(s)	115, 479
BseCI	ATCGAT	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	179
BseMI	GCAATG	2 cut(s)	115, 479
BseMII	CTCAG	2 cut(s)	90, 482
BsgI	GTGCAG	1 cut(s)	392
Bsh1285I	CGRYCG	1 cut(s)	561
BshVI	ATCGAT	1 cut(s)	561
BsiEI	CGRYCG	1 cut(s)	561
BsiHKAI	GWGCWC	1 cut(s)	397
BsiSI	CCGG	4 cut(s)	153, 180, 485, 528
BslFI	GGGAC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	45
Bsp1286I	GDGCHC	1 cut(s)	397
Bsp143I	GATC	2 cut(s)	236, 558
BspCNI	CTCAG	2 cut(s)	89, 481
BspDI	ATCGAT	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	170, 238
BspPI	GGATC	2 cut(s)	231, 244
BspQI	GCTCTTC	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	115, 479
BsrFI	RCCGGY	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	152
BssMI	GATC	2 cut(s)	236, 558
Bst4CI	ACNGT	1 cut(s)	193
Bst6I	CTCTTC	2 cut(s)	402, 545
BstC8I	GCNNGC	3 cut(s)	154, 375, 379
BstDEI	CTNAG	2 cut(s)	76, 468
BstKTI	GATC	2 cut(s)	239, 561
BstMAI	GTCTC	1 cut(s)	542
BstMBI	GATC	2 cut(s)	236, 558
BstMCI	CGRYCG	1 cut(s)	561
BstV2I	GAAGAC	3 cut(s)	141, 291, 346
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
Bsu15I	ATCGAT	1 cut(s)	561
BsuTUI	ATCGAT	1 cut(s)	561
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	189, 473
Cac8I	GCNNGC	3 cut(s)	154, 375, 379
CaiI	CAGNNNCTG	1 cut(s)	475
Cfr10I	RCCGGY	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	521
ClaI	ATCGAT	1 cut(s)	561
Csp6I	GTAC	1 cut(s)	407
CviJI	RGCY	6 cut(s)	52, 114, 250, 377, 395, 467
CviKI_1	RGCY	6 cut(s)	52, 114, 250, 377, 395, 467
CviQI	GTAC	1 cut(s)	407
DdeI	CTNAG	2 cut(s)	76, 468
DpnI	GATC	2 cut(s)	238, 560
DpnII	GATC	2 cut(s)	236, 558
Eam1104I	CTCTTC	2 cut(s)	402, 545
EarI	CTCTTC	2 cut(s)	402, 545
Ecl136II	GAGCTC	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	397
Eco47I	GGWCC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	395
EcoICRI	GAGCTC	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	397
FaiI	YATR	7 cut(s)	36, 121, 166, 258, 270, 583, 590
FaqI	GGGAC	1 cut(s)	45
FriOI	GRGCYC	1 cut(s)	397
FspBI	CTAG	2 cut(s)	125, 464
HapII	CCGG	4 cut(s)	153, 180, 485, 528
HindIII	AAGCTT	1 cut(s)	50
HinfI	GANTC	4 cut(s)	272, 488, 596, 604
HpaII	CCGG	4 cut(s)	153, 180, 485, 528
Hpy188I	TCNGA	4 cut(s)	42, 79, 241, 471
Hpy188III	TCNNGA	2 cut(s)	311, 556
Hpy99I	CGWCG	2 cut(s)	146, 245
HpyAV	CCTTC	3 cut(s)	343, 357, 586
HpyCH4III	ACNGT	1 cut(s)	193
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	2 cut(s)	108, 373
HpyF3I	CTNAG	2 cut(s)	76, 468
HpySE526I	ACGT	1 cut(s)	351
KroI	GCCGGC	1 cut(s)	152
KroNI	GCCGGC	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	236, 558
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	6 cut(s)	166, 193, 345, 359, 498, 541
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	2 cut(s)	125, 464
MaeII	ACGT	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	2 cut(s)	238, 560
MboI	GATC	2 cut(s)	236, 558
MboII	GAAGA	5 cut(s)	146, 296, 346, 389, 532
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	397
MluCI	AATT	2 cut(s)	532, 618
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	2 cut(s)	264, 516
MnlI	CCTC	4 cut(s)	73, 85, 184, 216
MroNI	GCCGGC	1 cut(s)	152
MseI	TTAA	4 cut(s)	90, 213, 386, 625
MspI	CCGG	4 cut(s)	153, 180, 485, 528
NaeI	GCCGGC	1 cut(s)	154
NdeII	GATC	2 cut(s)	236, 558
NgoMIV	GCCGGC	1 cut(s)	152
NlaIV	GGNNCC	2 cut(s)	170, 238
PciSI	GCTCTTC	1 cut(s)	402
PdiI	GCCGGC	1 cut(s)	154
PfeI	GAWTC	3 cut(s)	272, 488, 596
Ple19I	CGATCG	1 cut(s)	561
PleI	GAGTC	1 cut(s)	598
PpsI	GAGTC	1 cut(s)	598
Psp124BI	GAGCTC	1 cut(s)	397
PspN4I	GGNNCC	2 cut(s)	170, 238
PspPI	GGNCC	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	475
PsuI	RGATCY	1 cut(s)	236
PvuI	CGATCG	1 cut(s)	561
RsaI	GTAC	1 cut(s)	408
RsaNI	GTAC	1 cut(s)	407
SacI	GAGCTC	1 cut(s)	397
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	4 cut(s)	90, 213, 386, 625
Sau3AI	GATC	2 cut(s)	236, 558
Sau96I	GGNCC	1 cut(s)	521
SchI	GAGTC	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	397
SetI	ASST	8 cut(s)	54, 77, 208, 252, 297, 354, 397, 469
SfaNI	GCATC	1 cut(s)	19
SinI	GGWCC	1 cut(s)	521
SmlI	CTYRAG	2 cut(s)	413, 606
SmoI	CTYRAG	2 cut(s)	413, 606
Sse9I	AATT	2 cut(s)	532, 618
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	125, 464
SstI	GAGCTC	1 cut(s)	397
TaaI	ACNGT	1 cut(s)	193
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	2 cut(s)	310, 561
TasI	AATT	2 cut(s)	532, 618
TfiI	GAWTC	3 cut(s)	272, 488, 596
Tru1I	TTAA	4 cut(s)	90, 213, 386, 625
Tru9I	TTAA	4 cut(s)	90, 213, 386, 625
TscAI	CASTG	2 cut(s)	196, 480
TspDTI	ATGAA	4 cut(s)	297, 389, 471, 605
TspGWI	ACGGA	2 cut(s)	198, 513
TspRI	CASTG	2 cut(s)	196, 480
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	618
XspI	CTAG	2 cut(s)	125, 464

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.