Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

15066998 .. 15067986

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGGCTGCGTTGCATGAACGGCCTCGTTTCGACTTCCACGTTCCTGATTTCATCTGTGAAATACTGTCGTGGCTTCCGGTCAAATCTCTATTACGATTCCGGTGCGTATGCAAATCATGGCGTGCTTTAATCTCCAGTACTTGTTTCCTTAACAAGCATCTCAGACACGCAGCTGACACCAATAGATTACAGGTCCTTGAGTATATTCCTAAGGTATGTTGTGCCGGCGGAGTCCATAAACCTGAATCGAAGAGTTATAAACAAGACAATAAGGAGGAGGATATTTTTGGAGCTAGTTTGAGAATAATCTCTTTCGATTTAGCGGAGGAGGAATTTCAGGCGGTTCTACCATTACCCAGTAGTTTGCCAAGAAGGTGGTCGGTCTTATCTCTGCGTGGCCGTGGTATTGGGATCGGGATCACTACAAGAACTCGTCTGTTTGTATATCATTACGATCACAAGACCGCACCTACCATATGGACGAAGGAGGAGTACGGAGTCAAAGAATCTTGGACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

172

Amino Acids

19.92

Weight (kDa)

9.08

Isoelectric Point (pI)

54.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	16 - 50	1.5e-09	F-box domain
F-box-like	PF12937	17 - 50	2.5e-07	F-box-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	258
AciI	CCGC	4 cut(s)	228, 323, 341, 465
AclWI	GGATC	2 cut(s)	419, 425
AcoI	YGGCCR	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	332
AfaI	GTAC	2 cut(s)	139, 494
AluBI	AGCT	2 cut(s)	173, 293
AluI	AGCT	2 cut(s)	173, 293
AlwI	GGATC	2 cut(s)	419, 425
AoxI	GGCC	2 cut(s)	20, 397
ApeKI	GCWGC	2 cut(s)	5, 170
ApoI	RAATTY	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	193
AvaII	GGWCC	1 cut(s)	193
AxyI	CCTNAGG	1 cut(s)	210
BarI	GAAGNNNNNNTAC	2 cut(s)	476, 508
BbvI	GCAGC	1 cut(s)	182
BceAI	ACGGC	2 cut(s)	35, 384
BcgI	CGANNNNNNTGC	2 cut(s)	84, 118
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	6, 171
BlsI	GCNGC	2 cut(s)	7, 172
BmcAI	AGTACT	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmrI	ACTGGG	1 cut(s)	351
BmsI	GCATC	1 cut(s)	166
BmuI	ACTGGG	1 cut(s)	351
BpmI	CTGGAG	1 cut(s)	118
BpuEI	CTTGAG	1 cut(s)	218
BsaBI	GATNNNNATC	1 cut(s)	416
BsaJI	CCNNGG	1 cut(s)	400
BsaWI	WCCGGW	2 cut(s)	76, 99
Bse118I	RCCGGY	1 cut(s)	224
Bse1I	ACTGG	2 cut(s)	135, 357
Bse21I	CCTNAGG	1 cut(s)	210
Bse8I	GATNNNNATC	1 cut(s)	416
BseDI	CCNNGG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	416
BseMII	CTCAG	1 cut(s)	175
BseNI	ACTGG	2 cut(s)	135, 357
BseRI	GAGGAG	3 cut(s)	290, 341, 503
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	2 cut(s)	22, 399
BsiSI	CCGG	3 cut(s)	77, 100, 225
BsnI	GGCC	2 cut(s)	22, 399
Bsp143I	GATC	3 cut(s)	411, 417, 454
BspACI	CCGC	4 cut(s)	228, 323, 341, 465
BspANI	GGCC	2 cut(s)	22, 399
BspCNI	CTCAG	1 cut(s)	174
BspPI	GGATC	2 cut(s)	419, 425
BsrFI	RCCGGY	1 cut(s)	224
BsrI	ACTGG	2 cut(s)	135, 357
BssAI	RCCGGY	1 cut(s)	224
BssECI	CCNNGG	1 cut(s)	400
BssMI	GATC	3 cut(s)	411, 417, 454
Bst4CI	ACNGT	1 cut(s)	66
Bst6I	CTCTTC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	123, 226
BstDEI	CTNAG	2 cut(s)	161, 210
BstDSI	CCRYGG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	414, 420, 457
BstMBI	GATC	3 cut(s)	411, 417, 454
BstMWI	GCNNNNNNNGC	1 cut(s)	19
BstV1I	GCAGC	1 cut(s)	182
BstXI	CCANNNNNNTGG	1 cut(s)	375
Bsu36I	CCTNAGG	1 cut(s)	210
BsuRI	GGCC	2 cut(s)	22, 399
BtgI	CCRYGG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	123, 226
Cfr10I	RCCGGY	1 cut(s)	224
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	2 cut(s)	138, 493
CviAII	CATG	2 cut(s)	14, 117
CviJI	RGCY	6 cut(s)	5, 22, 73, 173, 293, 399
CviKI_1	RGCY	6 cut(s)	5, 22, 73, 173, 293, 399
CviQI	GTAC	2 cut(s)	138, 493
DdeI	CTNAG	2 cut(s)	161, 210
DpnI	GATC	3 cut(s)	413, 419, 456
DpnII	GATC	3 cut(s)	411, 417, 454
EaeI	YGGCCR	1 cut(s)	397
Eam1104I	CTCTTC	1 cut(s)	245
EarI	CTCTTC	1 cut(s)	245
EciI	GGCGGA	1 cut(s)	243
Eco47I	GGWCC	1 cut(s)	193
Eco81I	CCTNAGG	1 cut(s)	210
EcoO109I	RGGNCCY	1 cut(s)	193
FaeI	CATG	2 cut(s)	17, 120
FatI	CATG	2 cut(s)	13, 116
FauNDI	CATATG	1 cut(s)	476
Fnu4HI	GCNGC	2 cut(s)	6, 171
Fsp4HI	GCNGC	2 cut(s)	6, 171
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	2 cut(s)	6, 171
GsuI	CTGGAG	1 cut(s)	118
HaeIII	GGCC	2 cut(s)	22, 399
HapII	CCGG	3 cut(s)	77, 100, 225
Hin1II	CATG	2 cut(s)	17, 120
HinfI	GANTC	5 cut(s)	96, 231, 245, 498, 506
HpaII	CCGG	3 cut(s)	77, 100, 225
Hpy188I	TCNGA	1 cut(s)	164
Hpy188III	TCNNGA	2 cut(s)	44, 415
HpyAV	CCTTC	2 cut(s)	366, 478
HpyCH4III	ACNGT	1 cut(s)	66
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	13, 111
HpyF10VI	GCNNNNNNNGC	1 cut(s)	19
HpyF3I	CTNAG	2 cut(s)	161, 210
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	2 cut(s)	17, 120
KroI	GCCGGC	1 cut(s)	224
KroNI	GCCGGC	1 cut(s)	226
Kzo9I	GATC	3 cut(s)	411, 417, 454
LmnI	GCTCC	1 cut(s)	290
LpnPI	CCDG	9 cut(s)	57, 90, 113, 148, 176, 238, 255, 323, 370
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	166
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	39
MalI	GATC	3 cut(s)	413, 419, 456
MboI	GATC	3 cut(s)	411, 417, 454
MboII	GAAGA	1 cut(s)	262
MluCI	AATT	1 cut(s)	332
MlyI	GAGTC	2 cut(s)	240, 507
MnlI	CCTC	6 cut(s)	33, 268, 271, 319, 322, 481
MroNI	GCCGGC	1 cut(s)	224
MseI	TTAA	3 cut(s)	128, 150, 517
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	3 cut(s)	77, 100, 225
MwoI	GCNNNNNNNGC	1 cut(s)	19
NaeI	GCCGGC	1 cut(s)	226
NdeI	CATATG	1 cut(s)	476
NdeII	GATC	3 cut(s)	411, 417, 454
NgoMIV	GCCGGC	1 cut(s)	224
NlaIII	CATG	2 cut(s)	17, 120
PcsI	WCGNNNNNNNCGW	1 cut(s)	36
PdiI	GCCGGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	96, 245, 506
PkrI	GCNGC	2 cut(s)	7, 172
PleI	GAGTC	2 cut(s)	239, 506
PpsI	GAGTC	2 cut(s)	239, 506
PpuMI	RGGWCCY	1 cut(s)	193
PsiI	TTATAA	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	193
PspPI	GGNCC	1 cut(s)	193
PspPPI	RGGWCCY	1 cut(s)	193
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	2 cut(s)	139, 494
RsaNI	GTAC	2 cut(s)	138, 493
SaqAI	TTAA	3 cut(s)	128, 150, 517
SatI	GCNGC	2 cut(s)	6, 171
Sau3AI	GATC	3 cut(s)	411, 417, 454
Sau96I	GGNCC	1 cut(s)	193
ScaI	AGTACT	1 cut(s)	139
SchI	GAGTC	2 cut(s)	240, 507
SetI	ASST	8 cut(s)	42, 175, 195, 216, 244, 295, 377, 472
SfaNI	GCATC	1 cut(s)	166
SinI	GGWCC	1 cut(s)	193
SmlI	CTYRAG	1 cut(s)	197
SmoI	CTYRAG	1 cut(s)	197
Sse9I	AATT	1 cut(s)	332
SsiI	CCGC	4 cut(s)	228, 323, 341, 465
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	66
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	30, 248, 315
TaqII	GACCGA	1 cut(s)	370
TasI	AATT	1 cut(s)	332
TatI	WGTACW	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	96, 245, 506
Tru1I	TTAA	3 cut(s)	128, 150, 517
Tru9I	TTAA	3 cut(s)	128, 150, 517
TseI	GCWGC	2 cut(s)	5, 170
TspDTI	ATGAA	2 cut(s)	30, 40
TspGWI	ACGGA	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	1 cut(s)	294
ZrmI	AGTACT	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.