RLG00000022101

F-box kelch-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0004848
Physical Location & Seq
Reverse (-)
80933191 .. 80934208
1018 bp
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UTR
Exon/CDS
Intron
RLM00000022101

Sequence Viewer

Length: 696 bp
ATGTGTCCTAGCTGGGTTCCTGCAATGGCTTATGGCTTGATATGCCGGGAAGACTTGATTTGCCGAGAAGAAGTTGACGACAGGTTGATATTGCAAAAAGACGAGGAGGGAGAGGAAGAGAAAGAGGAAAAGGAAGACGAGGAGGAGAACGACGATGATCGTGATCTTATCATTTGGAATCCTTCTACTCAAGATACATGCAAGTTACCCAAAACCAAAATAATTTGTCGCCGCGACTTTTATGGATTTGGTTATGATTCCACCAATGAAGATTACAAGGTTATAATAGGCTTTAACAACCGTGAAAGTGAAAGTGACTGTGAAACTGAAATTAGGGCTTCCAATCCCCCAACAGCCACACTTGCAGTCTTTACATTAAAAACAGCCGAGGAGAAATTTCAAGCTTTATTGCCACCACCCGATATTTGCACGACAGAACACACCATCCACCTCGAAATTGGGACGACTATTGGGAATTCACTCTTCCTATATCTTTACAATTGGAGGTGTCATGAATTGCAAACAGAGAATGGTAAGAAAGTTTTGATGATGAGCAGCGAGCGGGAGCAGCTGGTATTGTATGATCCTGAGGAAAACAGTCAAAAGGAATATAGACGTCTTCTTCATGACTATTACTATTACAACTTGCCCGTATTATACTGGGAGACTTTAGTGTCACTAAAAACCAGTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBA_1

Protein Analysis

232

Amino Acids

27.16

Weight (kDa)

4.5

Isoelectric Point (pI)

56.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 54 - 136 1.2e-08 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 284
AasI GACNNNNNNGTC 1 cut(s) 673
AatII GACGTC 1 cut(s) 619
AccBSI CCGCTC 1 cut(s) 562
AccII CGCG 1 cut(s) 234
AciI CCGC 2 cut(s) 232, 562
AclWI GGATC 1 cut(s) 578
AcsI RAATTY 2 cut(s) 395, 475
AcyI GRCGYC 1 cut(s) 616
AgsI TTSAA 1 cut(s) 401
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 4 cut(s) 12, 404, 571, 693
AluI AGCT 4 cut(s) 12, 404, 571, 693
Alw26I GTCTC 1 cut(s) 659
AlwI GGATC 1 cut(s) 578
ApeKI GCWGC 2 cut(s) 555, 568
ApoI RAATTY 2 cut(s) 395, 475
AsuC2I CCSGG 1 cut(s) 47
AxyI CCTNAGG 1 cut(s) 588
BbsI GAAGAC 3 cut(s) 57, 141, 611
BbvI GCAGC 2 cut(s) 567, 580
BccI CCATC 1 cut(s) 452
BcnI CCSGG 1 cut(s) 47
BcoDI GTCTC 1 cut(s) 659
BfaI CTAG 2 cut(s) 9, 694
BisI GCNGC 3 cut(s) 232, 556, 569
BlsI GCNGC 3 cut(s) 233, 557, 570
Bme1390I CCNGG 1 cut(s) 47
BmiI GGNNCC 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 47
BmrI ACTGGG 1 cut(s) 670
BmuI ACTGGG 1 cut(s) 670
BpiI GAAGAC 3 cut(s) 57, 141, 611
BpuEI CTTGAG 1 cut(s) 174
BpuMI CCSGG 1 cut(s) 47
BsaBI GATNNNNATC 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 1 cut(s) 387
Bse1I ACTGG 2 cut(s) 665, 687
Bse21I CCTNAGG 1 cut(s) 588
Bse3DI GCAATG 1 cut(s) 30
Bse8I GATNNNNATC 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 387
BseGI GGATG 1 cut(s) 444
BseJI GATNNNNATC 1 cut(s) 162
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 579
BseNI ACTGG 2 cut(s) 665, 687
BseRI GAGGAG 4 cut(s) 119, 155, 158, 404
BseXI GCAGC 2 cut(s) 567, 580
BseYI CCCAGC 1 cut(s) 12
Bsh1236I CGCG 1 cut(s) 234
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 475
BsmAI GTCTC 1 cut(s) 659
BsmFI GGGAC 1 cut(s) 475
Bsp143I GATC 3 cut(s) 157, 163, 583
BspACI CCGC 2 cut(s) 232, 562
BspCNI CTCAG 1 cut(s) 580
BspFNI CGCG 1 cut(s) 234
BspHI TCATGA 2 cut(s) 511, 625
BspLI GGNNCC 1 cut(s) 18
BspPI GGATC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 30
BsrI ACTGG 2 cut(s) 665, 687
BssECI CCNNGG 1 cut(s) 387
BssMI GATC 3 cut(s) 157, 163, 583
BssNI GRCGYC 1 cut(s) 616
Bst4CI ACNGT 3 cut(s) 302, 320, 599
Bst6I CTCTTC 2 cut(s) 111, 488
BstACI GRCGYC 1 cut(s) 616
BstC8I GCNNGC 1 cut(s) 560
BstDEI CTNAG 1 cut(s) 588
BstF5I GGATG 1 cut(s) 444
BstFNI CGCG 1 cut(s) 234
BstKTI GATC 3 cut(s) 160, 166, 586
BstMAI GTCTC 1 cut(s) 659
BstMBI GATC 3 cut(s) 157, 163, 583
BstMWI GCNNNNNNNGC 3 cut(s) 42, 362, 568
BstNSI RCATGY 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 45
BstUI CGCG 1 cut(s) 234
BstV1I GCAGC 2 cut(s) 567, 580
BstV2I GAAGAC 3 cut(s) 57, 141, 611
Bsu36I CCTNAGG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 560
CciI TCATGA 2 cut(s) 511, 625
CviAII CATG 3 cut(s) 198, 512, 626
DdeI CTNAG 1 cut(s) 588
DpnI GATC 3 cut(s) 159, 165, 585
DpnII GATC 3 cut(s) 157, 163, 583
DrdI GACNNNNNNGTC 1 cut(s) 673
DseDI GACNNNNNNGTC 1 cut(s) 673
Eam1104I CTCTTC 2 cut(s) 111, 488
EarI CTCTTC 2 cut(s) 111, 488
Eco81I CCTNAGG 1 cut(s) 588
EcoRI GAATTC 1 cut(s) 475
FaeI CATG 3 cut(s) 201, 515, 629
FaqI GGGAC 1 cut(s) 475
FatI CATG 3 cut(s) 197, 511, 625
FauI CCCGC 1 cut(s) 555
Fnu4HI GCNGC 3 cut(s) 232, 556, 569
FokI GGATG 1 cut(s) 431
Fsp4HI GCNGC 3 cut(s) 232, 556, 569
FspBI CTAG 2 cut(s) 9, 694
GluI GCNGC 3 cut(s) 232, 556, 569
GsaI CCCAGC 1 cut(s) 16
HapII CCGG 1 cut(s) 46
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 3 cut(s) 201, 515, 629
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 402
HinfI GANTC 2 cut(s) 178, 257
HpaII CCGG 1 cut(s) 46
Hpy166II GTNNAC 1 cut(s) 76
Hpy188III TCNNGA 5 cut(s) 161, 191, 512, 587, 626
Hpy8I GTNNAC 1 cut(s) 76
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 192
HpyCH4III ACNGT 3 cut(s) 302, 320, 599
HpyCH4IV ACGT 1 cut(s) 616
HpyCH4V TGCA 6 cut(s) 23, 94, 201, 365, 429, 520
HpyF10VI GCNNNNNNNGC 3 cut(s) 42, 362, 568
HpyF3I CTNAG 1 cut(s) 588
HpySE526I ACGT 1 cut(s) 616
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 3 cut(s) 201, 515, 629
Kzo9I GATC 3 cut(s) 157, 163, 583
LmnI GCTCC 1 cut(s) 565
LpnPI CCDG 6 cut(s) 33, 59, 67, 557, 600, 646
Lsp1109I GCAGC 2 cut(s) 567, 580
MaeI CTAG 2 cut(s) 9, 694
MaeII ACGT 1 cut(s) 616
MaeIII GTNAC 3 cut(s) 204, 314, 675
MalI GATC 3 cut(s) 159, 165, 585
MbiI CCGCTC 1 cut(s) 562
MboI GATC 3 cut(s) 157, 163, 583
MboII GAAGA 8 cut(s) 62, 80, 128, 146, 281, 475, 611, 614
MfeI CAATTG 1 cut(s) 499
MluCI AATT 7 cut(s) 222, 330, 395, 456, 475, 499, 515
MseI TTAA 2 cut(s) 294, 377
MspA1I CMGCKG 1 cut(s) 571
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 47
MunI CAATTG 1 cut(s) 499
MvnI CGCG 1 cut(s) 234
MwoI GCNNNNNNNGC 3 cut(s) 42, 362, 568
NciI CCSGG 1 cut(s) 47
NdeII GATC 3 cut(s) 157, 163, 583
NlaIII CATG 3 cut(s) 201, 515, 629
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 2 cut(s) 89, 412
NmuCI GTSAC 2 cut(s) 314, 675
NspI RCATGY 1 cut(s) 201
PagI TCATGA 2 cut(s) 511, 625
PfeI GAWTC 2 cut(s) 178, 257
PkrI GCNGC 3 cut(s) 233, 557, 570
PsiI TTATAA 1 cut(s) 284
PspFI CCCAGC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 18
PvuII CAGCTG 1 cut(s) 571
SaqAI TTAA 2 cut(s) 294, 377
SatI GCNGC 3 cut(s) 232, 556, 569
Sau3AI GATC 3 cut(s) 157, 163, 583
ScrFI CCNGG 1 cut(s) 47
SetI ASST 9 cut(s) 14, 86, 282, 406, 453, 509, 573, 619, 695
SmlI CTYRAG 1 cut(s) 189
SmoI CTYRAG 1 cut(s) 189
Sse9I AATT 7 cut(s) 222, 330, 395, 456, 475, 499, 515
SsiI CCGC 2 cut(s) 232, 562
SspMI CTAG 2 cut(s) 9, 694
StyD4I CCNGG 1 cut(s) 45
TaaI ACNGT 3 cut(s) 302, 320, 599
TaiI ACGT 1 cut(s) 619
TaqI TCGA 1 cut(s) 453
TasI AATT 7 cut(s) 222, 330, 395, 456, 475, 499, 515
TauI GCSGC 1 cut(s) 234
TfiI GAWTC 2 cut(s) 178, 257
Tru1I TTAA 2 cut(s) 294, 377
Tru9I TTAA 2 cut(s) 294, 377
TseFI GTSAC 2 cut(s) 314, 675
TseI GCWGC 2 cut(s) 555, 568
Tsp45I GTSAC 2 cut(s) 314, 675
TspDTI ATGAA 3 cut(s) 282, 528, 614
XapI RAATTY 2 cut(s) 395, 475
XceI RCATGY 1 cut(s) 201
XcmI CCANNNNNNNNNTGG 1 cut(s) 455
XspI CTAG 2 cut(s) 9, 694
ZraI GACGTC 1 cut(s) 617
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.