Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Reverse (-)

86619282 .. 86620183

Gene Structure 902 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG647000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGAAAGAATATGGGGTTAATGAATCCTGGACTAGAGTAGTTCAGATTCCTTTATCTCCGCATCTTGAGTTCCGTTACAGACCGATTTGGATTTTAGAGAATGGTAAAGTTTTGATGAACCGGATCAGCCATAGCGTCCGGACTTGGATTTTACAGAATGGTAAGAAAGTTCTGATGATGAGCAGCGAGCGGGAGCAGCTGGTATTGTATGATCCTGAGGAAAACAGTCAAAAGGAATATAGACGTCTTCTTCATGACTATTACTATTACAACTCGCCCGTATCGTACCTGGAGACTTTAGTGTCACCAAAAATCGGTAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1 FBA_3

Protein Analysis

107

Amino Acids

12.87

Weight (kDa)

8.86

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	301
AatII	GACGTC	1 cut(s)	247
AccBSI	CCGCTC	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	138
AciI	CCGC	2 cut(s)	59, 190
AclWI	GGATC	2 cut(s)	131, 206
AcyI	GRCGYC	1 cut(s)	244
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	314
AjnI	CCWGG	2 cut(s)	26, 288
AluBI	AGCT	2 cut(s)	199, 321
AluI	AGCT	2 cut(s)	199, 321
Alw26I	GTCTC	1 cut(s)	287
AlwI	GGATC	2 cut(s)	131, 206
Aor13HI	TCCGGA	1 cut(s)	138
ApeKI	GCWGC	2 cut(s)	183, 196
AsuHPI	GGTGA	1 cut(s)	297
AxyI	CCTNAGG	1 cut(s)	216
BbsI	GAAGAC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	195, 208
BciT130I	CCWGG	2 cut(s)	28, 290
BcoDI	GTCTC	1 cut(s)	287
BfaI	CTAG	2 cut(s)	33, 322
BisI	GCNGC	2 cut(s)	184, 197
BlsI	GCNGC	2 cut(s)	185, 198
Bme1390I	CCNGG	2 cut(s)	28, 290
BmrFI	CCNGG	2 cut(s)	28, 290
BmsI	GCATC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	239
BpmI	CTGGAG	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	86
BsaHI	GRCGYC	1 cut(s)	244
BsaWI	WCCGGW	2 cut(s)	120, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse21I	CCTNAGG	1 cut(s)	216
BseAI	TCCGGA	1 cut(s)	138
BseBI	CCWGG	2 cut(s)	28, 290
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	207
BseXI	GCAGC	2 cut(s)	195, 208
BsiSI	CCGG	2 cut(s)	121, 139
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	1 cut(s)	287
Bsp13I	TCCGGA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	123, 211
BspACI	CCGC	2 cut(s)	59, 190
BspCNI	CTCAG	1 cut(s)	208
BspEI	TCCGGA	1 cut(s)	138
BspHI	TCATGA	1 cut(s)	253
BspPI	GGATC	2 cut(s)	131, 206
BsrBI	CCGCTC	1 cut(s)	190
BssMI	GATC	2 cut(s)	123, 211
BssNI	GRCGYC	1 cut(s)	244
Bst2UI	CCWGG	2 cut(s)	28, 290
Bst4CI	ACNGT	1 cut(s)	227
BstACI	GRCGYC	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	188
BstDEI	CTNAG	1 cut(s)	216
BstKTI	GATC	2 cut(s)	126, 214
BstMAI	GTCTC	1 cut(s)	287
BstMBI	GATC	2 cut(s)	123, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	2 cut(s)	28, 290
BstSCI	CCNGG	2 cut(s)	26, 288
BstV1I	GCAGC	2 cut(s)	195, 208
BstV2I	GAAGAC	1 cut(s)	239
Bsu36I	CCTNAGG	1 cut(s)	216
Cac8I	GCNNGC	1 cut(s)	188
CciI	TCATGA	1 cut(s)	253
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	1 cut(s)	254
CviJI	RGCY	3 cut(s)	129, 199, 321
CviKI_1	RGCY	3 cut(s)	129, 199, 321
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	2 cut(s)	125, 213
DpnII	GATC	2 cut(s)	123, 211
DrdI	GACNNNNNNGTC	1 cut(s)	301
DseDI	GACNNNNNNGTC	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	216
EcoRII	CCWGG	2 cut(s)	26, 288
FaeI	CATG	1 cut(s)	257
FaiI	YATR	5 cut(s)	12, 132, 210, 240, 255
FatI	CATG	1 cut(s)	253
FauI	CCCGC	1 cut(s)	183
Fnu4HI	GCNGC	2 cut(s)	184, 197
Fsp4HI	GCNGC	2 cut(s)	184, 197
FspBI	CTAG	2 cut(s)	33, 322
GluI	GCNGC	2 cut(s)	184, 197
GsuI	CTGGAG	1 cut(s)	311
HapII	CCGG	2 cut(s)	121, 139
HgaI	GACGC	1 cut(s)	124
Hin1I	GRCGYC	1 cut(s)	244
Hin1II	CATG	1 cut(s)	257
HinfI	GANTC	2 cut(s)	23, 46
HpaII	CCGG	2 cut(s)	121, 139
HphI	GGTGA	1 cut(s)	297
Hpy188I	TCNGA	2 cut(s)	45, 174
Hpy188III	TCNNGA	4 cut(s)	65, 139, 215, 254
HpyCH4III	ACNGT	1 cut(s)	227
HpyCH4IV	ACGT	1 cut(s)	244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	1 cut(s)	216
HpySE526I	ACGT	1 cut(s)	244
Hsp92I	GRCGYC	1 cut(s)	244
Hsp92II	CATG	1 cut(s)	257
Kpn2I	TCCGGA	1 cut(s)	138
Kzo9I	GATC	2 cut(s)	123, 211
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	8 cut(s)	13, 40, 134, 152, 185, 228, 275, 302
Lsp1109I	GCAGC	2 cut(s)	195, 208
LweI	GCATC	1 cut(s)	70
MaeI	CTAG	2 cut(s)	33, 322
MaeII	ACGT	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	74, 303
MalI	GATC	2 cut(s)	125, 213
MbiI	CCGCTC	1 cut(s)	190
MboI	GATC	2 cut(s)	123, 211
MboII	GAAGA	2 cut(s)	239, 242
MnlI	CCTC	1 cut(s)	211
MroI	TCCGGA	1 cut(s)	138
MseI	TTAA	1 cut(s)	18
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	121, 139
MspR9I	CCNGG	2 cut(s)	28, 290
MvaI	CCWGG	2 cut(s)	28, 290
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	2 cut(s)	123, 211
NlaIII	CATG	1 cut(s)	257
NmuCI	GTSAC	1 cut(s)	303
PagI	TCATGA	1 cut(s)	253
PcsI	WCGNNNNNNNCGW	1 cut(s)	281
PfeI	GAWTC	2 cut(s)	23, 46
PfoI	TCCNGGA	1 cut(s)	26
PkrI	GCNGC	2 cut(s)	185, 198
Psp6I	CCWGG	2 cut(s)	26, 288
PspGI	CCWGG	2 cut(s)	26, 288
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	2 cut(s)	184, 197
Sau3AI	GATC	2 cut(s)	123, 211
ScrFI	CCNGG	2 cut(s)	28, 290
SetI	ASST	4 cut(s)	201, 247, 291, 323
SfaNI	GCATC	1 cut(s)	70
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
SsiI	CCGC	2 cut(s)	59, 190
SspMI	CTAG	2 cut(s)	33, 322
StyD4I	CCNGG	2 cut(s)	26, 288
TaaI	ACNGT	1 cut(s)	227
TaiI	ACGT	1 cut(s)	247
TaqII	GACCGA	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	23, 46
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TseFI	GTSAC	1 cut(s)	303
TseI	GCWGC	2 cut(s)	183, 196
Tsp45I	GTSAC	1 cut(s)	303
TspDTI	ATGAA	4 cut(s)	17, 36, 131, 242
TspGWI	ACGGA	1 cut(s)	62
XspI	CTAG	2 cut(s)	33, 322
ZraI	GACGTC	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.