Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0004848

Physical Location & Seq

Genomic Coordinates Forward (+)

25023644 .. 25024813

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGGGGAACATCATCTTCATCTCTTTATCATGCTATGGCGTTCTTTCCCGTTGCTGGGATTTCATCACCAGACGAGCGACATATGTAGGGCTTGAAGGTGCTTTGAGCAACCCCTCTCCCTCATGGGATGGTTATATTAACGATGACCTAATTGTTGAGATACTGTCGCGGCTTCCAGCCAAATCTTTACTACGGTTTCGTTGTGTATGCAAGTCATGGCTTGCTTTGATCTCTGATCCCTATTTTGCTAGGAAGCACATCAGCACATACAACAACAGGTTGAAGCTTCTTGAGACAGTCAATCCCACCAGATCCATAGACTTCGAAGCAATATTAAAGAATGACGATCGGGTGGGATATACCGTCCTACCAGAAGCACCAAGATTATGGGTTCTGGGTTCCTGCAATGGCTTGATATGCCGGGAAGAAGACGAGGGAGGTGATCTTATCTTATGGAACCCTTATACTCGAGATACATACAAGTTACCGGAACAAATTAAAACTAGAAATCGTCAGTTTTTTGGATTTGGTTATGATTCCACCAATCAAGATTACAAGGTCATAGTAGGCCTTGAAACCGAAATTACAGTCTTTACATTAAAAACCGGCTCATGGAAGATTGTTGAACAGTCCGAGTATGTTGGAAGGTTTTATGGGGAGGGGTGCTTATTGAACGGAGCTCTACATTGGCTAGATGACAGTCGGTCAAAATTCACAATAATCTCTTTTGATCTGGTGGAGGAGAAATTTCAGGAGTTGCCACCACCCAATATTTGGAGGAAAGGAGTCTCCCTTGGTATTGGGAAAACTATTGGCAACTGTCTCTTCCTATATCTTTATGATTACAAGCGTCATACATCCCAAACAGGTATTGCATTAACAATATGGGTGCTGAACGAATATGGGGTGAATGAATCTTGGACTAGAGTTGTTCAAATTCCTTCTTCTAGTCTATCTCCATGTCATATTTTTGATTATGAACCGATTTTGGTTTTAGAGGATGATAAAGTTTTGATGAATCGGATCAGCAATAGAAGCGAGTGGAACCAATTGGTACTGTATAATCCCAAGGAAAACCGTCAAAAGAAATATAGACGTCTTATTCATGACTATTACATAATGCCCCAATTATACGTGGAGACTTTAGTATCGCCAAAAACAGGTAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FBA_1

Protein Analysis

389

Amino Acids

45.12

Weight (kDa)

7.5

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	48 - 83	1.6e-10	F-box domain
F-box-like	PF12937	48 - 85	2.5e-08	F-box-like
FBA_3	PF08268	128 - 363	5.7e-20	F-box associated beta propeller domain
FBA_1	PF07734	132 - 359	1.2e-24	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004848)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g18082 FvH4_6g43211
malus_domestica	MD09G1135400.v1.1 MD17G1131100.v1.1
prunus_persica	Prupe.3G191300_v2.0.a1
pyrus_communis	pycom420g00950
rosa_chinensis	RchiOBHm_Chr5g0030151 RchiOBHm_Chr7g0203691
rosa_laevigata	RLG00000005803 RLG00000022101
rosa_multiflora	Rmu_co8245821.1_g000001 Rmu_sc0001707.1_g000011 Rmu_sc0005354.1_g000006 Rmu_sc0005969.1_g000041 Rmu_sc0038336.1_g000001
rosa_roxburghii	Rroxscaffold_1G00049840 Rroxscaffold_1G00049860 Rroxscaffold_2G00093700 Rroxscaffold_2G00093750 Rroxscaffold_2G00095980 Rroxscaffold_2G00096010 Rroxscaffold_6G00426490
rosa_rugosa	Rorug02G0430700 Rorug02G0447100 Rorug02G0558400 Rorug02G0610800 Rorug05G0117300
rosa_samantha	Rh2AG633400 Rh2BG647000
rosa_wichuraiana	Rw5G019160 Rw5G019190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1099
AccB7I	CCANNNNNTGG	1 cut(s)	774
AccII	CGCG	1 cut(s)	169
AciI	CCGC	1 cut(s)	169
AclWI	GGATC	3 cut(s)	230, 306, 1031
AcsI	RAATTY	3 cut(s)	710, 746, 936
AcyI	GRCGYC	1 cut(s)	1096
AfaI	GTAC	1 cut(s)	1056
AfiI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1160
AgsI	TTSAA	6 cut(s)	95, 283, 575, 626, 673, 935
AhdI	GACNNNNNGTC	1 cut(s)	703
AluBI	AGCT	2 cut(s)	286, 680
AluI	AGCT	2 cut(s)	286, 680
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	4 cut(s)	287, 793, 827, 1133
AlwI	GGATC	3 cut(s)	230, 306, 1031
Ama87I	CYCGRG	1 cut(s)	468
AoxI	GGCC	1 cut(s)	568
ApoI	RAATTY	3 cut(s)	710, 746, 936
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AsuC2I	CCSGG	1 cut(s)	422
AsuHPI	GGTGA	3 cut(s)	58, 452, 919
AsuII	TTCGAA	1 cut(s)	324
AvaI	CYCGRG	1 cut(s)	468
BaeI	ACNNNNGTAYC	2 cut(s)	1131, 1164
BanII	GRGCYC	1 cut(s)	682
BbsI	GAAGAC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	682
BccI	CCATC	1 cut(s)	122
BcnI	CCSGG	1 cut(s)	422
BcoDI	GTCTC	4 cut(s)	287, 793, 827, 1133
BfaI	CTAG	5 cut(s)	249, 504, 692, 924, 948
BisI	GCNGC	1 cut(s)	170
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	1 cut(s)	422
BmeRI	GACNNNNNGTC	1 cut(s)	703
BmeT110I	CYCGRG	1 cut(s)	468
BmiI	GGNNCC	3 cut(s)	400, 458, 1046
BmrFI	CCNGG	1 cut(s)	422
BpiI	GAAGAC	1 cut(s)	435
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	311
BpuMI	CCSGG	1 cut(s)	422
BsaAI	YACGTR	1 cut(s)	1135
BsaHI	GRCGYC	1 cut(s)	1096
BsaJI	CCNNGG	2 cut(s)	793, 1068
BsaWI	WCCGGW	1 cut(s)	487
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1160
Bse118I	RCCGGY	1 cut(s)	605
Bse3DI	GCAATG	1 cut(s)	412
BseDI	CCNNGG	2 cut(s)	793, 1068
BseGI	GGATG	3 cut(s)	133, 857, 1006
BseLI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1160
BseMI	GCAATG	1 cut(s)	412
BseRI	GAGGAG	1 cut(s)	755
BseYI	CCCAGC	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	169
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	1 cut(s)	570
BsiEI	CGRYCG	1 cut(s)	349
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	468
BsiSI	CCGG	3 cut(s)	421, 488, 606
BslI	CCNNNNNNNGG	5 cut(s)	54, 55, 612, 774, 1160
BsmAI	GTCTC	4 cut(s)	287, 793, 827, 1133
BsnI	GGCC	1 cut(s)	570
BsoBI	CYCGRG	1 cut(s)	468
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
BspACI	CCGC	1 cut(s)	169
BspANI	GGCC	1 cut(s)	570
BspFNI	CGCG	1 cut(s)	169
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	400, 458, 1046
BspPI	GGATC	3 cut(s)	230, 306, 1031
BspT104I	TTCGAA	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	412
BsrFI	RCCGGY	1 cut(s)	605
BssAI	RCCGGY	1 cut(s)	605
BssECI	CCNNGG	2 cut(s)	793, 1068
BssMI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
BssNI	GRCGYC	1 cut(s)	1096
BssT1I	CCWWGG	2 cut(s)	793, 1068
Bst6I	CTCTTC	1 cut(s)	830
BstACI	GRCGYC	1 cut(s)	1096
BstBAI	YACGTR	1 cut(s)	1135
BstBI	TTCGAA	1 cut(s)	324
BstC8I	GCNNGC	1 cut(s)	222
BstF5I	GGATG	3 cut(s)	133, 857, 1006
BstFNI	CGCG	1 cut(s)	169
BstKTI	GATC	7 cut(s)	231, 238, 314, 349, 445, 733, 1026
BstMAI	GTCTC	4 cut(s)	287, 793, 827, 1133
BstMBI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	417, 1035
BstSCI	CCNGG	1 cut(s)	420
BstUI	CGCG	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	435
BstX2I	RGATCY	1 cut(s)	311
BstXI	CCANNNNNNTGG	1 cut(s)	387
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	1 cut(s)	570
BtsCI	GGATG	3 cut(s)	133, 857, 1006
Cac8I	GCNNGC	1 cut(s)	222
CciI	TCATGA	1 cut(s)	1105
Cfr10I	RCCGGY	1 cut(s)	605
CseI	GACGC	1 cut(s)	839
Csp6I	GTAC	1 cut(s)	1055
CviAII	CATG	6 cut(s)	30, 123, 216, 612, 960, 1106
CviQI	GTAC	1 cut(s)	1055
DpnI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1025
DpnII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
DriI	GACNNNNNGTC	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	830
Eam1105I	GACNNNNNGTC	1 cut(s)	703
EarI	CTCTTC	1 cut(s)	830
Ecl136II	GAGCTC	1 cut(s)	680
Eco130I	CCWWGG	2 cut(s)	793, 1068
Eco147I	AGGCCT	1 cut(s)	570
Eco24I	GRGCYC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	680
Eco88I	CYCGRG	1 cut(s)	468
EcoICRI	GAGCTC	1 cut(s)	680
EcoT14I	CCWWGG	2 cut(s)	793, 1068
EcoT38I	GRGCYC	1 cut(s)	682
ErhI	CCWWGG	2 cut(s)	793, 1068
FaeI	CATG	6 cut(s)	33, 126, 219, 615, 963, 1109
FatI	CATG	6 cut(s)	29, 122, 215, 611, 959, 1105
FauNDI	CATATG	1 cut(s)	82
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	3 cut(s)	140, 844, 1013
FriOI	GRGCYC	1 cut(s)	682
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	5 cut(s)	249, 504, 692, 924, 948
GluI	GCNGC	1 cut(s)	170
GsaI	CCCAGC	1 cut(s)	58
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	3 cut(s)	421, 488, 606
HgaI	GACGC	1 cut(s)	839
Hin1I	GRCGYC	1 cut(s)	1096
Hin1II	CATG	6 cut(s)	33, 126, 219, 615, 963, 1109
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	4 cut(s)	536, 786, 914, 1018
HpaII	CCGG	3 cut(s)	421, 488, 606
HphI	GGTGA	3 cut(s)	58, 452, 919
Hpy188I	TCNGA	3 cut(s)	235, 634, 1023
Hpy188III	TCNNGA	5 cut(s)	290, 470, 548, 752, 1106
HpyAV	CCTTC	3 cut(s)	89, 639, 951
HpyCH4IV	ACGT	2 cut(s)	1096, 1134
HpyCH4V	TGCA	3 cut(s)	210, 405, 875
HpyF10VI	GCNNNNNNNGC	2 cut(s)	417, 1035
HpySE526I	ACGT	2 cut(s)	1096, 1134
Hsp92I	GRCGYC	1 cut(s)	1096
Hsp92II	CATG	6 cut(s)	33, 126, 219, 615, 963, 1109
Kzo9I	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
LmnI	GCTCC	1 cut(s)	677
MaeI	CTAG	5 cut(s)	249, 504, 692, 924, 948
MaeII	ACGT	2 cut(s)	1096, 1134
MaeIII	GTNAC	1 cut(s)	483
MalI	GATC	7 cut(s)	230, 237, 313, 348, 444, 732, 1025
MboI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
MboII	GAAGA	6 cut(s)	7, 437, 440, 628, 817, 936
MfeI	CAATTG	1 cut(s)	1049
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	8 cut(s)	150, 495, 582, 710, 746, 936, 1049, 1127
MlyI	GAGTC	1 cut(s)	795
MmeI	TCCRAC	1 cut(s)	622
MnlI	CCTC	8 cut(s)	124, 130, 427, 431, 652, 733, 771, 991
MseI	TTAA	5 cut(s)	138, 335, 498, 599, 878
MspI	CCGG	3 cut(s)	421, 488, 606
MspR9I	CCNGG	1 cut(s)	422
MunI	CAATTG	1 cut(s)	1049
MvnI	CGCG	1 cut(s)	169
MwoI	GCNNNNNNNGC	2 cut(s)	417, 1035
NciI	CCSGG	1 cut(s)	422
NdeI	CATATG	1 cut(s)	82
NdeII	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
NlaIII	CATG	6 cut(s)	33, 126, 219, 615, 963, 1109
NlaIV	GGNNCC	3 cut(s)	400, 458, 1046
NspV	TTCGAA	1 cut(s)	324
PaeR7I	CTCGAG	1 cut(s)	468
PagI	TCATGA	1 cut(s)	1105
PceI	AGGCCT	1 cut(s)	570
PfeI	GAWTC	3 cut(s)	536, 914, 1018
PflMI	CCANNNNNTGG	1 cut(s)	774
PkrI	GCNGC	1 cut(s)	171
Ple19I	CGATCG	1 cut(s)	349
PleI	GAGTC	1 cut(s)	794
PpsI	GAGTC	1 cut(s)	794
Ppu21I	YACGTR	1 cut(s)	1135
Psp124BI	GAGCTC	1 cut(s)	682
PspFI	CCCAGC	1 cut(s)	54
PspN4I	GGNNCC	3 cut(s)	400, 458, 1046
PsuI	RGATCY	1 cut(s)	311
PvuI	CGATCG	1 cut(s)	349
RsaI	GTAC	1 cut(s)	1056
RsaNI	GTAC	1 cut(s)	1055
SacI	GAGCTC	1 cut(s)	682
SaqAI	TTAA	5 cut(s)	138, 335, 498, 599, 878
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	7 cut(s)	228, 235, 311, 346, 442, 730, 1023
SchI	GAGTC	1 cut(s)	795
ScrFI	CCNGG	1 cut(s)	422
SduI	GDGCHC	1 cut(s)	682
Sfr274I	CTCGAG	1 cut(s)	468
SfuI	TTCGAA	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	290, 468
SmoI	CTYRAG	2 cut(s)	290, 468
Sse9I	AATT	8 cut(s)	150, 495, 582, 710, 746, 936, 1049, 1127
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	169
SspI	AATATT	2 cut(s)	333, 772
SspMI	CTAG	5 cut(s)	249, 504, 692, 924, 948
SstI	GAGCTC	1 cut(s)	682
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	1 cut(s)	420
StyI	CCWWGG	2 cut(s)	793, 1068
TaiI	ACGT	2 cut(s)	1099, 1137
TaqI	TCGA	2 cut(s)	324, 469
TaqII	GACCGA	1 cut(s)	693
TasI	AATT	8 cut(s)	150, 495, 582, 710, 746, 936, 1049, 1127
TauI	GCSGC	1 cut(s)	172
TfiI	GAWTC	3 cut(s)	536, 914, 1018
Tru1I	TTAA	5 cut(s)	138, 335, 498, 599, 878
Tru9I	TTAA	5 cut(s)	138, 335, 498, 599, 878
TspDTI	ATGAA	6 cut(s)	7, 52, 927, 993, 1031, 1094
TspGWI	ACGGA	1 cut(s)	690
Van91I	CCANNNNNTGG	1 cut(s)	774
XapI	RAATTY	3 cut(s)	710, 746, 936
XcmI	CCANNNNNNNNNTGG	1 cut(s)	771
XhoI	CTCGAG	1 cut(s)	468
XspI	CTAG	5 cut(s)	249, 504, 692, 924, 948
ZraI	GACGTC	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.