FvH4_3g18163

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003191
Physical Location & Seq
Forward (+)
11599076 .. 11600319
1244 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g18163.t1

Sequence Viewer

Length: 603 bp
ATGAGTTCGAACTGCAACTCAAATCGTATTGAAGACATGATTAGTGGCTTGCCCGATAAGATTCTTAACAATGTCATTTCCTTCCTCGCCACTATTGATGTTGTGAGGACCATCATTTTATCTCATCGATGGAAGAAGTTGTGGGTGTCTGTGCCCAGTTTATATCTGCAAGATGATGGTTTTAATCATAAAAAAGAAGACTATAATCCAAATGATTTTGCACGGTTTGTTCATCATGTACTCTCCCAGCGTGGCTCTACACCCAGTCATGAATTCTCTCTTAAACGTACTAATAATGCGGATGACTATCCTCAAATTGGTGAGTGGATTGGCGCTCCGGTTGGTAATGTTGTTGAACTCAATCTTCACAATCAAGGGTCTGACTTTCGTGACGACCCTTATGAGTTGCCTATAAGCCTTTTCAATTTGAGGAGTTTAGTGATCCTGAGGCTGGGACTGGAAGCAAAATATGTTTTCATTCCTCCCAACTCTAATTGTTTTCCATGTCTCAAGCTTCTTGATGTTGAATTGGCTGAGATCGTATCGGACGTTGTCGTTGAAGAAGTCATGGTCGGCGAGCTTGTTCTCTATCAGTTATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

201

Amino Acids

22.79

Weight (kDa)

5.06

Isoelectric Point (pI)

38.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 14 - 53 3.9e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 299
AclWI GGATC 1 cut(s) 436
AcsI RAATTY 1 cut(s) 272
AfaI GTAC 2 cut(s) 240, 289
AfiI CCNNNNNNNGG 2 cut(s) 317, 451
AgsI TTSAA 5 cut(s) 32, 356, 424, 527, 560
AluBI AGCT 2 cut(s) 514, 580
AluI AGCT 2 cut(s) 514, 580
Alw26I GTCTC 1 cut(s) 512
AlwI GGATC 1 cut(s) 436
ApoI RAATTY 1 cut(s) 272
AspLEI GCGC 1 cut(s) 335
AspS9I GGNCC 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 8
AvaII GGWCC 1 cut(s) 108
AxyI CCTNAGG 1 cut(s) 446
BaeGI GKGCMC 1 cut(s) 156
BbsI GAAGAC 2 cut(s) 39, 204
BccI CCATC 3 cut(s) 119, 123, 170
BcoDI GTCTC 1 cut(s) 512
BfoI RGCGCY 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 108
BmgT120I GGNCC 1 cut(s) 108
BmrI ACTGGG 2 cut(s) 150, 258
BmuI ACTGGG 2 cut(s) 150, 258
BpiI GAAGAC 2 cut(s) 39, 204
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 494
Bsa29I ATCGAT 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 337
Bsc4I CCNNNNNNNGG 2 cut(s) 317, 451
Bse1I ACTGG 3 cut(s) 156, 264, 462
Bse21I CCTNAGG 1 cut(s) 446
Bse8I GATNNNNATC 1 cut(s) 306
BseCI ATCGAT 1 cut(s) 127
BseGI GGATG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 317, 451
BseMII CTCAG 2 cut(s) 437, 525
BseNI ACTGG 3 cut(s) 156, 264, 462
BseRI GAGGAG 1 cut(s) 445
BseSI GKGCMC 1 cut(s) 156
BseYI CCCAGC 2 cut(s) 246, 451
BshVI ATCGAT 1 cut(s) 127
BsiSI CCGG 1 cut(s) 338
BslFI GGGAC 1 cut(s) 468
BslI CCNNNNNNNGG 2 cut(s) 317, 451
BsmAI GTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 468
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 2 cut(s) 441, 537
BspACI CCGC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 438, 526
BspDI ATCGAT 1 cut(s) 127
BspHI TCATGA 1 cut(s) 268
BspPI GGATC 1 cut(s) 436
BspT104I TTCGAA 1 cut(s) 8
BsrI ACTGG 3 cut(s) 156, 264, 462
BssMI GATC 2 cut(s) 441, 537
Bst4CI ACNGT 1 cut(s) 225
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 2 cut(s) 50, 578
BstDEI CTNAG 2 cut(s) 446, 534
BstF5I GGATG 1 cut(s) 307
BstH2I RGCGCY 1 cut(s) 336
BstHHI GCGC 1 cut(s) 335
BstKTI GATC 2 cut(s) 444, 540
BstMAI GTCTC 1 cut(s) 512
BstMBI GATC 2 cut(s) 441, 537
BstSLI GKGCMC 1 cut(s) 156
BstV2I GAAGAC 2 cut(s) 39, 204
Bsu15I ATCGAT 1 cut(s) 127
Bsu36I CCTNAGG 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 127
BtsCI GGATG 1 cut(s) 307
Cac8I GCNNGC 2 cut(s) 50, 578
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 335
Cfr13I GGNCC 1 cut(s) 108
ClaI ATCGAT 1 cut(s) 127
Csp6I GTAC 2 cut(s) 239, 288
CviAII CATG 5 cut(s) 37, 236, 269, 504, 568
CviJI RGCY 7 cut(s) 48, 255, 417, 451, 514, 533, 580
CviKI_1 RGCY 7 cut(s) 48, 255, 417, 451, 514, 533, 580
CviQI GTAC 2 cut(s) 239, 288
DdeI CTNAG 2 cut(s) 446, 534
DpnI GATC 2 cut(s) 443, 539
DpnII GATC 2 cut(s) 441, 537
Eco47I GGWCC 1 cut(s) 108
Eco81I CCTNAGG 1 cut(s) 446
EcoRI GAATTC 1 cut(s) 272
FaeI CATG 5 cut(s) 40, 239, 272, 507, 571
FaqI GGGAC 1 cut(s) 468
FatI CATG 5 cut(s) 36, 235, 268, 503, 567
FokI GGATG 1 cut(s) 314
GlaI GCGC 1 cut(s) 334
GsaI CCCAGC 2 cut(s) 250, 455
HaeII RGCGCY 1 cut(s) 336
HapII CCGG 1 cut(s) 338
HhaI GCGC 1 cut(s) 335
Hin1II CATG 5 cut(s) 40, 239, 272, 507, 571
Hin6I GCGC 1 cut(s) 333
HinP1I GCGC 1 cut(s) 333
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 1 cut(s) 61
HpaII CCGG 1 cut(s) 338
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 3 cut(s) 382, 547, 602
Hpy188III TCNNGA 4 cut(s) 269, 389, 445, 518
HpyAV CCTTC 1 cut(s) 91
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 2 cut(s) 286, 549
HpyCH4V TGCA 3 cut(s) 15, 169, 221
HpyF3I CTNAG 2 cut(s) 446, 534
HpySE526I ACGT 2 cut(s) 286, 549
Hsp92II CATG 5 cut(s) 40, 239, 272, 507, 571
HspAI GCGC 1 cut(s) 333
Kzo9I GATC 2 cut(s) 441, 537
LmnI GCTCC 1 cut(s) 340
LpnPI CCDG 7 cut(s) 169, 260, 277, 351, 437, 443, 458
MaeII ACGT 2 cut(s) 286, 549
MaeIII GTNAC 1 cut(s) 389
MalI GATC 2 cut(s) 443, 539
MboI GATC 2 cut(s) 441, 537
MboII GAAGA 5 cut(s) 44, 145, 209, 356, 572
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 5 cut(s) 272, 315, 424, 493, 527
MnlI CCTC 6 cut(s) 95, 99, 321, 423, 441, 492
MseI TTAA 3 cut(s) 66, 183, 282
MspI CCGG 1 cut(s) 338
NdeII GATC 2 cut(s) 441, 537
NlaIII CATG 5 cut(s) 40, 239, 272, 507, 571
NmuCI GTSAC 1 cut(s) 389
NspV TTCGAA 1 cut(s) 8
PagI TCATGA 1 cut(s) 268
PcsI WCGNNNNNNNCGW 1 cut(s) 546
PfeI GAWTC 1 cut(s) 61
PflFI GACNNNGTC 1 cut(s) 551
PspFI CCCAGC 2 cut(s) 246, 451
PspPI GGNCC 1 cut(s) 108
PsyI GACNNNGTC 1 cut(s) 551
RsaI GTAC 2 cut(s) 240, 289
RsaNI GTAC 2 cut(s) 239, 288
SaqAI TTAA 3 cut(s) 66, 183, 282
Sau3AI GATC 2 cut(s) 441, 537
Sau96I GGNCC 1 cut(s) 108
SduI GDGCHC 1 cut(s) 156
SetI ASST 4 cut(s) 289, 516, 552, 582
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 5 cut(s) 272, 315, 424, 493, 527
SsiI CCGC 1 cut(s) 299
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 2 cut(s) 289, 552
TaqI TCGA 2 cut(s) 8, 127
TasI AATT 5 cut(s) 272, 315, 424, 493, 527
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 1 cut(s) 61
Tru1I TTAA 3 cut(s) 66, 183, 282
Tru9I TTAA 3 cut(s) 66, 183, 282
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 3 cut(s) 221, 285, 466
Tth111I GACNNNGTC 1 cut(s) 551
VpaK11BI GGWCC 1 cut(s) 108
XapI RAATTY 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.